Wall clock time and date at job start Tue Mar 31 2020 16:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46651 * 2 1 4 4 C 1.52998 * 109.46987 * 119.99787 * 2 1 3 5 5 N 1.46501 * 109.46875 * 174.47776 * 4 2 1 6 6 C 1.46502 * 119.99800 * 275.85153 * 5 4 2 7 7 C 1.50696 * 109.47364 * 279.12618 * 6 5 4 8 8 H 1.08002 * 119.99968 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99912 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99629 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00137 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47030 * 89.99937 * 11 9 7 13 13 H 1.48504 * 109.47079 * 209.99675 * 11 9 7 14 14 H 1.48500 * 109.47106 * 329.99651 * 11 9 7 15 15 C 1.34772 * 120.00289 * 95.85539 * 5 4 2 16 16 O 1.21580 * 120.00019 * 6.46968 * 15 5 4 17 17 C 1.47643 * 119.99871 * 186.46993 * 15 5 4 18 18 C 1.40090 * 119.85232 * 330.26830 * 17 15 5 19 19 C 1.36408 * 120.26987 * 180.02562 * 18 17 15 20 20 C 1.39442 * 119.98137 * 0.02562 * 19 18 17 21 21 C 1.47460 * 133.82205 * 179.97438 * 20 19 18 22 22 C 1.41799 * 126.89066 * 359.97438 * 21 20 19 23 23 O 1.21394 * 119.99821 * 359.97438 * 22 21 20 24 24 C 1.38011 * 106.21840 * 180.02562 * 21 20 19 25 25 N 1.34527 * 109.65532 * 0.02562 * 24 21 20 26 26 H 0.97008 * 124.65701 * 180.02562 * 25 24 21 27 27 C 1.38109 * 110.68696 * 359.97438 * 25 24 21 28 28 C 1.38767 * 132.98289 * 179.70653 * 27 25 24 29 29 H 1.08999 * 109.47358 * 299.99589 * 1 2 3 30 30 H 1.08996 * 109.47648 * 60.00379 * 1 2 3 31 31 H 1.09004 * 109.47205 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47349 * 239.99899 * 2 1 3 33 33 H 1.09002 * 109.47326 * 65.40810 * 3 2 1 34 34 H 1.09002 * 109.46630 * 185.40353 * 3 2 1 35 35 H 1.08996 * 109.47295 * 305.40583 * 3 2 1 36 36 H 1.08993 * 109.47210 * 54.47875 * 4 2 1 37 37 H 1.09003 * 109.47465 * 294.47439 * 4 2 1 38 38 H 1.09004 * 109.47365 * 39.12997 * 6 5 4 39 39 H 1.09001 * 109.47029 * 159.12629 * 6 5 4 40 40 H 0.97004 * 119.99632 * 179.97438 * 10 9 7 41 41 H 1.07995 * 119.86609 * 0.02562 * 18 17 15 42 42 H 1.07996 * 120.00804 * 179.97438 * 19 18 17 43 43 H 1.07994 * 120.00253 * 179.97438 * 22 21 20 44 44 H 1.07999 * 125.17111 * 180.02562 * 24 21 20 45 45 H 1.08000 * 120.15532 * 0.30929 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4989 -0.8374 1.1846 6 6 4.1136 -1.9427 0.4452 7 6 4.1090 -3.1833 1.3006 8 1 3.6904 -3.1516 2.2957 9 6 4.6391 -4.3590 0.8128 10 7 4.6346 -5.4418 1.5591 11 14 5.3638 -4.4136 -0.9080 12 1 6.8089 -4.0773 -0.8474 13 1 5.1961 -5.7769 -1.4727 14 1 4.6624 -3.4303 -1.7719 15 6 4.2756 0.0725 1.8054 16 8 3.7700 0.9201 2.5153 17 6 5.7403 0.0398 1.6233 18 6 6.3853 -1.1790 1.3760 19 6 7.7382 -1.2191 1.2070 20 6 8.4848 -0.0438 1.2808 21 6 9.9212 0.2633 1.1506 22 6 10.9690 -0.6578 0.8967 23 8 10.7201 -1.8384 0.7632 24 6 10.0414 1.6269 1.3266 25 7 8.8277 2.1632 1.5483 26 1 8.6609 3.1067 1.7000 27 6 7.8517 1.1862 1.5293 28 6 6.4757 1.2200 1.7055 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.7577 1.9277 0.9345 34 1 3.1256 1.4441 -0.0968 35 1 1.5996 1.9836 -0.8376 36 1 1.5981 -1.7163 1.3001 37 1 1.7597 -0.1534 2.1365 38 1 3.5476 -2.1285 -0.4676 39 1 5.1405 -1.6818 0.1891 40 1 5.0073 -6.2690 1.2158 41 1 5.8089 -2.0905 1.3189 42 1 8.2311 -2.1611 1.0169 43 1 11.9883 -0.3090 0.8221 44 1 10.9687 2.1793 1.2917 45 1 5.9762 2.1581 1.8975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858827913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:18 Heat of formation + Delta-G solvation = -13.075301 kcal Electronic energy + Delta-G solvation = -28374.115502 eV Core-core repulsion = 24550.288221 eV Total energy + Delta-G solvation = -3823.827281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.57529 -41.18177 -39.36936 -38.00114 -37.57700 -35.81125 -34.33959 -33.16536 -31.13487 -30.70067 -29.92420 -28.04081 -27.33439 -25.31460 -24.68303 -24.12969 -23.29595 -21.28779 -20.68282 -20.15720 -19.14286 -19.11834 -18.12685 -17.53578 -16.94859 -16.65519 -16.51444 -16.07861 -15.84693 -15.66141 -15.53967 -15.34711 -15.02791 -14.76264 -14.69685 -14.56974 -14.36904 -14.25560 -13.84986 -13.56568 -13.19504 -12.93890 -12.76419 -12.69317 -12.67420 -12.42946 -12.35194 -11.94146 -11.84088 -11.80100 -11.56516 -11.49754 -10.93128 -10.78655 -10.74526 -10.53265 -9.47083 -9.34025 -8.81818 -8.39926 -6.46313 -0.23867 0.12172 0.83570 1.31141 1.36394 1.41336 1.77153 1.92079 2.25015 2.31066 2.41148 2.86029 2.95643 3.52672 3.64335 3.76822 3.90518 3.94554 4.02973 4.16898 4.17960 4.22837 4.38486 4.51334 4.59964 4.63498 4.67864 4.69917 4.77965 4.83760 4.88765 4.93852 5.00820 5.05052 5.13835 5.18975 5.32421 5.33524 5.39571 5.41943 5.43572 5.50664 5.63046 5.70336 5.97167 6.09133 6.50763 6.54227 6.62329 6.94454 7.13157 7.25700 8.75585 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009930 B = 0.005193 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.946666 B = 5391.045420 C = 7562.232298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 C -0.129 4.129 4 C 0.118 3.882 5 N -0.584 5.584 6 C 0.188 3.812 7 C -0.538 4.538 8 H 0.036 0.964 9 C 0.034 3.966 10 N -0.928 5.928 11 Si 0.916 3.084 12 H -0.266 1.266 13 H -0.275 1.275 14 H -0.236 1.236 15 C 0.561 3.439 16 O -0.582 6.582 17 C -0.145 4.145 18 C -0.134 4.134 19 C -0.116 4.116 20 C -0.056 4.056 21 C -0.352 4.352 22 C 0.404 3.596 23 O -0.547 6.547 24 C 0.212 3.788 25 N -0.544 5.544 26 H 0.444 0.556 27 C 0.048 3.952 28 C -0.048 4.048 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.069 0.931 40 H 0.271 0.729 41 H 0.167 0.833 42 H 0.106 0.894 43 H 0.155 0.845 44 H 0.262 0.738 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.414 20.892 -5.472 23.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.187 4.187 4 C -0.004 4.004 5 N -0.312 5.312 6 C 0.067 3.933 7 C -0.576 4.576 8 H 0.054 0.946 9 C -0.167 4.167 10 N -0.567 5.567 11 Si 0.738 3.262 12 H -0.191 1.191 13 H -0.200 1.200 14 H -0.159 1.159 15 C 0.351 3.649 16 O -0.465 6.465 17 C -0.149 4.149 18 C -0.153 4.153 19 C -0.135 4.135 20 C -0.060 4.060 21 C -0.360 4.360 22 C 0.270 3.730 23 O -0.427 6.427 24 C 0.073 3.927 25 N -0.145 5.145 26 H 0.287 0.713 27 C -0.055 4.055 28 C -0.069 4.069 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.184 0.816 42 H 0.124 0.876 43 H 0.171 0.829 44 H 0.278 0.722 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.950 20.638 -5.153 23.078 hybrid contribution -0.170 -0.872 -0.119 0.896 sum 8.780 19.766 -5.273 22.262 Atomic orbital electron populations 1.21708 0.92562 1.02311 1.02739 1.21463 0.97485 0.96520 0.97257 1.21680 0.99648 0.95536 1.01815 1.21587 0.78967 1.00767 0.99080 1.47730 1.06867 1.25680 1.50875 1.20521 0.96374 0.84255 0.92198 1.21340 1.40474 0.94167 1.01613 0.94588 1.25625 0.95241 0.94709 1.01102 1.70010 1.45840 1.01771 1.39045 0.86171 0.80137 0.79123 0.80727 1.19132 1.20038 1.15889 1.18312 0.86868 0.80672 0.79022 1.90634 1.75860 1.39793 1.40198 1.19552 0.92899 0.94422 1.07985 1.22574 0.95651 1.00475 0.96560 1.20261 0.93070 0.97767 1.02354 1.19559 0.94653 0.92264 0.99557 1.20875 0.92924 0.96877 1.25344 1.22607 0.94664 0.86243 0.69441 1.90583 1.88370 1.22547 1.41203 1.23593 0.90045 0.91618 0.87447 1.41469 1.04796 1.10291 1.57934 0.71315 1.17885 0.90366 0.89047 1.08232 1.20108 0.90207 0.97898 0.98637 0.92210 0.90735 0.92411 0.91594 0.93170 0.95150 0.90968 0.91318 0.90995 0.94401 0.91356 0.91946 0.81614 0.87590 0.82866 0.72202 0.83580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.19 71.98 0.66 -2.58 16 2 C -0.11 -3.29 3.12 -10.79 -0.03 -3.33 16 3 C -0.13 -3.79 8.28 71.98 0.60 -3.19 16 4 C 0.12 4.55 4.97 86.38 0.43 4.97 16 5 N -0.58 -25.53 2.28 -829.80 -1.89 -27.42 16 6 C 0.19 8.83 3.74 85.63 0.32 9.15 16 7 C -0.54 -30.07 8.10 25.60 0.21 -29.86 16 8 H 0.04 2.29 8.06 -2.91 -0.02 2.27 16 9 C 0.03 1.95 5.36 84.66 0.45 2.40 16 10 N -0.93 -56.82 13.96 21.45 0.30 -56.52 16 11 Si 0.92 42.77 27.34 68.60 1.88 44.64 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 14 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 15 C 0.56 24.64 6.11 86.73 0.53 25.17 16 16 O -0.58 -26.43 15.68 -3.97 -0.06 -26.49 16 17 C -0.14 -5.93 5.59 -20.09 -0.11 -6.04 16 18 C -0.13 -6.03 7.41 22.29 0.17 -5.87 16 19 C -0.12 -4.89 9.73 22.13 0.22 -4.67 16 20 C -0.06 -1.87 6.24 -19.99 -0.12 -1.99 16 21 C -0.35 -7.88 6.13 -20.02 -0.12 -8.00 16 22 C 0.40 9.09 11.45 68.70 0.79 9.88 16 23 O -0.55 -19.92 16.77 -3.38 -0.06 -19.98 16 24 C 0.21 1.92 11.82 84.23 1.00 2.92 16 25 N -0.54 -6.97 5.94 -186.56 -1.11 -8.08 16 26 H 0.44 1.88 8.96 -92.70 -0.83 1.05 16 27 C 0.05 1.30 7.23 38.84 0.28 1.58 16 28 C -0.05 -1.53 9.61 22.65 0.22 -1.32 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.07 2.09 7.95 -2.39 -0.02 2.07 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.03 0.99 7.03 -2.39 -0.02 0.97 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 2.75 8.11 -2.39 -0.02 2.73 16 37 H 0.07 2.83 7.19 -2.39 -0.02 2.81 16 38 H 0.04 1.71 7.00 -2.39 -0.02 1.70 16 39 H 0.07 3.22 3.38 -3.25 -0.01 3.21 16 40 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 41 H 0.17 8.46 2.91 -2.91 -0.01 8.45 16 42 H 0.11 4.91 7.35 -2.91 -0.02 4.89 16 43 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 44 H 0.26 -1.54 8.06 -2.91 -0.02 -1.57 16 45 H 0.15 4.06 7.90 -2.91 -0.02 4.04 16 Total: -1.00 -86.23 367.76 4.66 -81.57 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.14 Total: 23.06 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 5.47 Total: -10.79 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -2.70 Total: -92.02 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -0.12 Total: -46.47 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.64 kcal Total: -86.23 4.66 -81.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858827913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.493 kcal (2) G-P(sol) polarization free energy of solvation -86.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds