Wall clock time and date at job start Tue Mar 31 2020 15:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47172 * 2 1 4 4 C 1.52999 * 109.47045 * 239.99874 * 2 1 3 5 5 C 1.50695 * 109.46970 * 60.00076 * 4 2 1 6 6 H 1.07999 * 120.00181 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99859 * 180.02562 * 5 4 2 8 8 N 1.31522 * 119.99677 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00128 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46655 * 90.00333 * 9 7 5 11 11 H 1.48502 * 109.46997 * 210.00164 * 9 7 5 12 12 H 1.48497 * 109.46923 * 330.00247 * 9 7 5 13 13 C 1.52997 * 109.47056 * 119.99982 * 2 1 3 14 14 N 1.46501 * 109.47379 * 300.00069 * 13 2 1 15 15 C 1.34773 * 120.00206 * 180.02562 * 14 13 2 16 16 O 1.21587 * 120.00273 * 359.97438 * 15 14 13 17 17 C 1.47637 * 120.00255 * 179.97438 * 15 14 13 18 18 C 1.40095 * 119.84587 * 359.97438 * 17 15 14 19 19 C 1.36410 * 120.26469 * 180.02562 * 18 17 15 20 20 C 1.39440 * 119.98939 * 359.97438 * 19 18 17 21 21 C 1.47450 * 133.82866 * 179.97438 * 20 19 18 22 22 C 1.41803 * 126.88826 * 359.97438 * 21 20 19 23 23 O 1.21393 * 120.00177 * 359.97438 * 22 21 20 24 24 C 1.38012 * 106.21970 * 180.02562 * 21 20 19 25 25 N 1.34530 * 109.65574 * 0.02562 * 24 21 20 26 26 H 0.96999 * 124.65272 * 180.02562 * 25 24 21 27 27 C 1.38107 * 110.68396 * 359.97438 * 25 24 21 28 28 C 1.38765 * 132.98019 * 179.71022 * 27 25 24 29 29 H 1.09007 * 109.47354 * 299.99699 * 1 2 3 30 30 H 1.09000 * 109.47565 * 60.00078 * 1 2 3 31 31 H 1.08998 * 109.47275 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46816 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47264 * 300.00100 * 3 2 1 34 34 H 1.09007 * 109.47190 * 60.00201 * 3 2 1 35 35 H 1.08999 * 109.47061 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.47311 * 300.00197 * 4 2 1 37 37 H 0.97007 * 119.99334 * 179.97438 * 8 7 5 38 38 H 1.08999 * 109.47396 * 179.97438 * 13 2 1 39 39 H 1.08998 * 109.47416 * 59.99673 * 13 2 1 40 40 H 0.96998 * 120.00080 * 359.97438 * 14 13 2 41 41 H 1.07994 * 119.87049 * 0.02562 * 18 17 15 42 42 H 1.08003 * 120.00443 * 179.97438 * 19 18 17 43 43 H 1.07999 * 120.00019 * 179.97438 * 22 21 20 44 44 H 1.08000 * 125.17042 * 180.02562 * 24 21 20 45 45 H 1.08002 * 120.15271 * 0.31489 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4796 6 1 0.9164 0.8670 -2.3806 7 6 1.8702 -0.4823 -3.7319 8 7 1.4322 0.1381 -4.8057 9 14 2.9442 -2.0011 -3.9033 10 1 2.0855 -3.2118 -3.9482 11 1 3.7356 -1.9088 -5.1564 12 1 3.8649 -2.0899 -2.7416 13 6 2.0399 -0.7212 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8776 -0.4908 3.6695 16 8 2.5766 -1.4794 3.7811 17 6 1.3860 0.2054 4.8750 18 6 0.5812 1.3445 4.7428 19 6 0.1227 1.9947 5.8508 20 6 0.4543 1.5257 7.1214 21 6 0.1388 1.9744 8.4900 22 6 -0.6499 3.0939 8.8581 23 8 -1.1447 3.7962 8.0005 24 6 0.7659 1.0870 9.3409 25 7 1.4219 0.1579 8.6223 26 1 1.9366 -0.5712 9.0023 27 6 1.2608 0.3841 7.2695 28 6 1.7285 -0.2702 6.1386 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1299 -0.7217 -1.2490 36 1 1.6766 -1.7489 -1.2492 37 1 1.6666 -0.1934 -5.6868 38 1 3.1299 -0.7217 1.2490 39 1 1.6766 -1.7489 1.2493 40 1 0.9943 0.7582 2.3565 41 1 0.3227 1.7093 3.7597 42 1 -0.4972 2.8727 5.7440 43 1 -0.8105 3.3217 9.9016 44 1 0.7348 1.1317 10.4195 45 1 2.3493 -1.1484 6.2378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861730176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:06 Heat of formation + Delta-G solvation = -24.405513 kcal Electronic energy + Delta-G solvation = -26746.905459 eV Core-core repulsion = 22922.586864 eV Total energy + Delta-G solvation = -3824.318595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -41.97216 -39.86498 -38.74491 -37.49700 -36.77256 -33.72926 -32.55040 -32.12720 -30.15294 -30.02212 -27.81344 -26.54792 -26.39158 -24.76434 -23.72461 -22.99692 -22.15740 -20.33386 -20.09207 -18.78774 -18.19662 -17.26501 -16.89003 -16.49884 -16.03822 -15.89440 -15.45595 -15.05647 -15.01303 -14.54054 -14.15759 -14.05220 -13.96255 -13.92768 -13.70513 -13.48644 -13.35372 -12.72505 -12.42458 -12.29203 -12.24838 -11.93196 -11.47974 -11.23956 -11.11563 -10.99980 -10.61133 -10.48434 -10.11032 -10.06910 -9.96677 -9.94855 -9.73923 -9.46787 -8.98782 -8.92761 -8.72870 -8.52596 -8.23264 -6.03275 -4.00470 0.34154 0.77392 1.41731 2.38302 2.63341 3.07604 3.32104 3.33443 3.40249 3.44168 3.73557 4.00952 4.23182 4.29216 4.46436 4.54914 4.69061 4.86058 5.00183 5.10025 5.12804 5.29178 5.39442 5.53006 5.53031 5.63693 5.69439 5.92446 5.99600 6.11260 6.11707 6.14516 6.19889 6.22549 6.32258 6.46644 6.60313 6.60698 6.68997 6.75156 6.90498 7.02722 7.06136 7.20627 7.35948 7.37163 7.63578 7.80035 8.30135 8.53946 9.00964 9.59358 11.09408 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026270 B = 0.002238 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.596066 B =12509.924625 C =13379.160203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.130 4.130 4 C -0.002 4.002 5 C -0.510 4.510 6 H 0.079 0.921 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.713 5.713 15 C 0.555 3.445 16 O -0.546 6.546 17 C -0.115 4.115 18 C -0.099 4.099 19 C -0.078 4.078 20 C -0.039 4.039 21 C -0.299 4.299 22 C 0.404 3.596 23 O -0.477 6.477 24 C 0.148 3.852 25 N -0.563 5.563 26 H 0.424 0.576 27 C 0.060 3.940 28 C -0.054 4.054 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.018 0.982 36 H 0.014 0.986 37 H 0.262 0.738 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.400 0.600 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.094 0.906 44 H 0.189 0.811 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.487 2.162 32.207 32.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.064 4.064 3 C -0.187 4.187 4 C -0.040 4.040 5 C -0.548 4.548 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.003 3.997 14 N -0.365 5.365 15 C 0.341 3.659 16 O -0.425 6.425 17 C -0.119 4.119 18 C -0.118 4.118 19 C -0.097 4.097 20 C -0.043 4.043 21 C -0.308 4.308 22 C 0.266 3.734 23 O -0.353 6.353 24 C 0.010 3.990 25 N -0.162 5.162 26 H 0.262 0.738 27 C -0.043 4.043 28 C -0.075 4.075 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.037 0.963 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.237 0.763 41 H 0.149 0.851 42 H 0.157 0.843 43 H 0.110 0.890 44 H 0.206 0.794 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.169 1.719 31.597 31.665 hybrid contribution 0.672 -0.996 0.020 1.201 sum -0.497 0.723 31.617 31.629 Atomic orbital electron populations 1.21790 0.94745 1.01333 1.00844 1.20698 0.95870 0.95948 0.93857 1.21786 1.00512 0.95549 1.00841 1.19591 0.96298 0.95497 0.92589 1.21076 1.31802 1.13349 0.88590 0.90355 1.25007 0.95725 0.96765 0.96004 1.69909 1.45947 1.40542 0.97869 0.86854 0.81329 0.83925 0.77635 1.20393 1.21525 1.18998 1.21685 0.99009 0.96087 0.82962 1.46088 1.52865 1.31917 1.05588 1.18103 0.80437 0.84012 0.83304 1.90763 1.38473 1.26347 1.86951 1.19643 1.01695 0.97657 0.92899 1.20941 0.97101 0.94569 0.99234 1.20317 0.99525 1.00176 0.89673 1.19086 0.97682 0.94390 0.93119 1.20554 1.13504 1.04722 0.92023 1.21707 0.76199 0.81172 0.94344 1.90557 1.42097 1.47453 1.55158 1.22632 0.91001 0.87678 0.97676 1.41472 1.43569 1.26310 1.04882 0.73826 1.18114 1.03398 0.98997 0.83831 1.20119 0.99281 0.99541 0.88560 0.95009 0.90774 0.93342 0.93337 0.90770 0.95008 0.96341 0.96792 0.92809 0.91617 0.91626 0.76281 0.85082 0.84350 0.89003 0.79382 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 2 C -0.06 -1.16 0.54 -154.51 -0.08 -1.24 16 3 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 4 C 0.00 -0.04 3.11 -27.89 -0.09 -0.13 16 5 C -0.51 -13.65 8.20 -34.44 -0.28 -13.93 16 6 H 0.08 2.21 5.92 -52.49 -0.31 1.90 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 9 Si 0.87 21.55 27.47 -169.99 -4.67 16.88 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 13 C 0.13 2.11 4.56 -4.04 -0.02 2.09 16 14 N -0.71 -10.26 4.91 -61.32 -0.30 -10.57 16 15 C 0.55 8.36 7.76 -12.43 -0.10 8.26 16 16 O -0.55 -9.97 16.32 5.29 0.09 -9.88 16 17 C -0.11 -1.42 5.87 -104.97 -0.62 -2.04 16 18 C -0.10 -1.09 9.47 -39.54 -0.37 -1.46 16 19 C -0.08 -0.87 9.73 -39.79 -0.39 -1.25 16 20 C -0.04 -0.40 6.24 -104.82 -0.65 -1.06 16 21 C -0.30 -2.26 6.13 -104.87 -0.64 -2.90 16 22 C 0.40 3.00 11.45 32.09 0.37 3.36 16 23 O -0.48 -5.76 16.77 5.46 0.09 -5.67 16 24 C 0.15 0.53 11.82 -16.45 -0.19 0.34 16 25 N -0.56 -2.73 5.94 -10.32 -0.06 -2.79 16 26 H 0.42 0.69 8.96 -40.82 -0.37 0.32 16 27 C 0.06 0.55 7.23 -83.97 -0.61 -0.06 16 28 C -0.05 -0.59 9.61 -38.99 -0.37 -0.96 16 29 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 30 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 34 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 35 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 36 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.40 4.96 4.16 -40.82 -0.17 4.79 16 41 H 0.13 1.22 6.36 -52.49 -0.33 0.89 16 42 H 0.14 1.52 7.35 -52.48 -0.39 1.13 16 43 H 0.09 0.26 8.06 -52.49 -0.42 -0.17 16 44 H 0.19 -0.28 8.06 -52.49 -0.42 -0.70 16 45 H 0.14 1.43 7.62 -52.49 -0.40 1.03 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -36.20 368.51 -7.91 -44.12 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.84 Total: 1.95 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -3.55 Total: -13.11 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.41 Total: -39.84 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.18 Total: -15.55 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.20 -7.91 -44.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861730176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.710 kcal (2) G-P(sol) polarization free energy of solvation -36.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds