Wall clock time and date at job start Tue Mar 31 2020 15:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47172 * 2 1 4 4 C 1.52999 * 109.47045 * 239.99874 * 2 1 3 5 5 C 1.50695 * 109.46970 * 60.00076 * 4 2 1 6 6 H 1.07999 * 120.00181 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99859 * 180.02562 * 5 4 2 8 8 N 1.31522 * 119.99677 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00128 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46655 * 90.00333 * 9 7 5 11 11 H 1.48502 * 109.46997 * 210.00164 * 9 7 5 12 12 H 1.48497 * 109.46923 * 330.00247 * 9 7 5 13 13 C 1.52997 * 109.47056 * 119.99982 * 2 1 3 14 14 N 1.46501 * 109.47379 * 300.00069 * 13 2 1 15 15 C 1.34773 * 120.00206 * 180.02562 * 14 13 2 16 16 O 1.21587 * 120.00273 * 359.97438 * 15 14 13 17 17 C 1.47637 * 120.00255 * 179.97438 * 15 14 13 18 18 C 1.40095 * 119.84587 * 359.97438 * 17 15 14 19 19 C 1.36410 * 120.26469 * 180.02562 * 18 17 15 20 20 C 1.39440 * 119.98939 * 359.97438 * 19 18 17 21 21 C 1.47450 * 133.82866 * 179.97438 * 20 19 18 22 22 C 1.41803 * 126.88826 * 359.97438 * 21 20 19 23 23 O 1.21393 * 120.00177 * 359.97438 * 22 21 20 24 24 C 1.38012 * 106.21970 * 180.02562 * 21 20 19 25 25 N 1.34530 * 109.65574 * 0.02562 * 24 21 20 26 26 H 0.96999 * 124.65272 * 180.02562 * 25 24 21 27 27 C 1.38107 * 110.68396 * 359.97438 * 25 24 21 28 28 C 1.38765 * 132.98019 * 179.71022 * 27 25 24 29 29 H 1.09007 * 109.47354 * 299.99699 * 1 2 3 30 30 H 1.09000 * 109.47565 * 60.00078 * 1 2 3 31 31 H 1.08998 * 109.47275 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46816 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47264 * 300.00100 * 3 2 1 34 34 H 1.09007 * 109.47190 * 60.00201 * 3 2 1 35 35 H 1.08999 * 109.47061 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.47311 * 300.00197 * 4 2 1 37 37 H 0.97007 * 119.99334 * 179.97438 * 8 7 5 38 38 H 1.08999 * 109.47396 * 179.97438 * 13 2 1 39 39 H 1.08998 * 109.47416 * 59.99673 * 13 2 1 40 40 H 0.96998 * 120.00080 * 359.97438 * 14 13 2 41 41 H 1.07994 * 119.87049 * 0.02562 * 18 17 15 42 42 H 1.08003 * 120.00443 * 179.97438 * 19 18 17 43 43 H 1.07999 * 120.00019 * 179.97438 * 22 21 20 44 44 H 1.08000 * 125.17042 * 180.02562 * 24 21 20 45 45 H 1.08002 * 120.15271 * 0.31489 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4796 6 1 0.9164 0.8670 -2.3806 7 6 1.8702 -0.4823 -3.7319 8 7 1.4322 0.1381 -4.8057 9 14 2.9442 -2.0011 -3.9033 10 1 2.0855 -3.2118 -3.9482 11 1 3.7356 -1.9088 -5.1564 12 1 3.8649 -2.0899 -2.7416 13 6 2.0399 -0.7212 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8776 -0.4908 3.6695 16 8 2.5766 -1.4794 3.7811 17 6 1.3860 0.2054 4.8750 18 6 0.5812 1.3445 4.7428 19 6 0.1227 1.9947 5.8508 20 6 0.4543 1.5257 7.1214 21 6 0.1388 1.9744 8.4900 22 6 -0.6499 3.0939 8.8581 23 8 -1.1447 3.7962 8.0005 24 6 0.7659 1.0870 9.3409 25 7 1.4219 0.1579 8.6223 26 1 1.9366 -0.5712 9.0023 27 6 1.2608 0.3841 7.2695 28 6 1.7285 -0.2702 6.1386 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1299 -0.7217 -1.2490 36 1 1.6766 -1.7489 -1.2492 37 1 1.6666 -0.1934 -5.6868 38 1 3.1299 -0.7217 1.2490 39 1 1.6766 -1.7489 1.2493 40 1 0.9943 0.7582 2.3565 41 1 0.3227 1.7093 3.7597 42 1 -0.4972 2.8727 5.7440 43 1 -0.8105 3.3217 9.9016 44 1 0.7348 1.1317 10.4195 45 1 2.3493 -1.1484 6.2378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861730176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:05 Heat of formation + Delta-G solvation = -49.231657 kcal Electronic energy + Delta-G solvation = -26747.982002 eV Core-core repulsion = 22922.586864 eV Total energy + Delta-G solvation = -3825.395138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.56937 -41.01693 -39.37176 -38.82603 -37.71967 -35.27230 -34.03338 -33.19384 -30.96741 -30.74697 -29.66402 -28.00612 -27.67306 -25.45676 -24.80848 -23.81872 -23.60648 -21.40717 -20.68428 -19.95405 -19.16670 -18.90180 -18.04988 -17.41074 -17.07526 -16.59137 -16.47766 -16.24243 -15.89070 -15.64614 -15.36363 -15.23515 -15.20481 -14.86539 -14.75380 -14.57760 -14.25858 -14.21111 -14.16680 -13.91677 -12.96416 -12.90773 -12.84791 -12.76258 -12.59808 -12.31170 -12.27118 -12.16356 -11.77897 -11.53254 -11.35829 -11.02661 -10.90811 -10.81325 -10.70456 -10.54598 -10.13640 -9.49111 -8.87624 -8.22234 -6.22399 -0.32200 0.03370 0.81045 1.35920 1.38392 1.48692 1.75089 1.86410 2.26667 2.39112 2.41278 2.88632 3.12994 3.52331 3.62706 3.76500 3.86514 3.90177 4.03894 4.04130 4.14809 4.19858 4.31130 4.43323 4.54880 4.62846 4.69167 4.75964 4.86667 4.93047 5.00224 5.08158 5.11054 5.17958 5.28269 5.31901 5.35014 5.38328 5.40065 5.45017 5.53361 5.54752 5.67606 5.75901 5.88069 6.37972 6.43286 6.50398 6.84425 6.91116 7.14703 7.40124 8.93329 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026270 B = 0.002238 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.596066 B =12509.924625 C =13379.160203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.125 4.125 4 C -0.003 4.003 5 C -0.501 4.501 6 H 0.052 0.948 7 C 0.004 3.996 8 N -0.951 5.951 9 Si 0.935 3.065 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.251 1.251 13 C 0.138 3.862 14 N -0.706 5.706 15 C 0.558 3.442 16 O -0.583 6.583 17 C -0.141 4.141 18 C -0.097 4.097 19 C -0.097 4.097 20 C -0.056 4.056 21 C -0.345 4.345 22 C 0.407 3.593 23 O -0.539 6.539 24 C 0.205 3.795 25 N -0.550 5.550 26 H 0.443 0.557 27 C 0.050 3.950 28 C -0.050 4.050 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.262 0.738 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.410 0.590 41 H 0.141 0.859 42 H 0.130 0.870 43 H 0.148 0.852 44 H 0.255 0.745 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.925 1.343 36.963 36.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.183 4.183 4 C -0.041 4.041 5 C -0.539 4.539 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.593 5.593 9 Si 0.760 3.240 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.175 1.175 13 C 0.014 3.986 14 N -0.358 5.358 15 C 0.347 3.653 16 O -0.465 6.465 17 C -0.145 4.145 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.060 4.060 21 C -0.353 4.353 22 C 0.273 3.727 23 O -0.420 6.420 24 C 0.066 3.934 25 N -0.150 5.150 26 H 0.285 0.715 27 C -0.054 4.054 28 C -0.071 4.071 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.249 0.751 41 H 0.159 0.841 42 H 0.148 0.852 43 H 0.164 0.836 44 H 0.270 0.730 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.596 0.884 36.393 36.408 hybrid contribution 0.473 -0.708 -1.233 1.498 sum -0.123 0.177 35.160 35.160 Atomic orbital electron populations 1.21724 0.93981 1.01369 1.01218 1.20557 0.96442 0.96106 0.92736 1.21721 1.00378 0.94957 1.01221 1.19563 0.96030 0.95520 0.92982 1.21361 1.30222 1.12283 0.90082 0.93005 1.25856 0.97500 0.99988 0.95894 1.70052 1.48152 1.42656 0.98423 0.85877 0.79847 0.80314 0.77919 1.19700 1.21486 1.17492 1.21350 0.98503 0.95696 0.83056 1.45914 1.52918 1.32072 1.04875 1.18458 0.79548 0.83451 0.83890 1.90733 1.40271 1.28054 1.87458 1.19419 1.03955 0.98816 0.92309 1.20981 0.96725 0.94123 0.99833 1.20349 1.00268 1.00369 0.90582 1.19580 0.97345 0.94771 0.94345 1.20842 1.16309 1.06897 0.91263 1.22499 0.74330 0.79905 0.95971 1.90549 1.44834 1.49514 1.57055 1.23598 0.86011 0.84067 0.99740 1.41598 1.43230 1.26986 1.03233 0.71548 1.18015 1.03351 0.98606 0.85420 1.20189 0.98686 0.99353 0.88862 0.91598 0.93418 0.93474 0.93510 0.93407 0.91592 0.96562 0.96708 0.92878 0.92295 0.92231 0.75071 0.84100 0.85206 0.83554 0.72953 0.84350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 8.05 71.98 0.58 -3.75 16 2 C -0.06 -2.11 0.54 -52.18 -0.03 -2.14 16 3 C -0.13 -4.33 8.05 71.98 0.58 -3.75 16 4 C 0.00 -0.14 3.11 29.85 0.09 -0.05 16 5 C -0.50 -27.51 8.20 25.60 0.21 -27.30 16 6 H 0.05 3.07 5.92 -2.91 -0.02 3.05 16 7 C 0.00 0.22 5.47 84.65 0.46 0.68 16 8 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 9 Si 0.94 44.82 27.47 68.60 1.88 46.70 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 12 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 13 C 0.14 4.55 4.56 86.38 0.39 4.94 16 14 N -0.71 -19.74 4.91 -466.17 -2.29 -22.03 16 15 C 0.56 16.63 7.76 86.73 0.67 17.31 16 16 O -0.58 -21.28 16.32 -3.99 -0.07 -21.35 16 17 C -0.14 -3.45 5.87 -20.09 -0.12 -3.57 16 18 C -0.10 -2.13 9.47 22.29 0.21 -1.92 16 19 C -0.10 -2.17 9.73 22.13 0.22 -1.96 16 20 C -0.06 -1.10 6.24 -20.00 -0.12 -1.22 16 21 C -0.35 -4.14 6.13 -20.02 -0.12 -4.26 16 22 C 0.41 5.01 11.45 68.70 0.79 5.80 16 23 O -0.54 -12.96 16.77 -3.38 -0.06 -13.02 16 24 C 0.20 0.31 11.82 84.23 1.00 1.30 16 25 N -0.55 -2.89 5.94 -186.55 -1.11 -4.00 16 26 H 0.44 -0.74 8.96 -92.71 -0.83 -1.57 16 27 C 0.05 0.81 7.23 38.85 0.28 1.09 16 28 C -0.05 -1.04 9.61 22.65 0.22 -0.82 16 29 H 0.07 1.79 6.86 -2.38 -0.02 1.77 16 30 H 0.05 1.89 6.62 -2.39 -0.02 1.88 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 34 H 0.07 1.79 6.86 -2.38 -0.02 1.78 16 35 H 0.02 0.74 7.20 -2.39 -0.02 0.73 16 36 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 37 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 38 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.41 9.62 4.16 -92.71 -0.39 9.24 16 41 H 0.14 2.58 6.36 -2.91 -0.02 2.57 16 42 H 0.13 3.04 7.35 -2.91 -0.02 3.02 16 43 H 0.15 0.11 8.06 -2.91 -0.02 0.09 16 44 H 0.25 -2.96 8.06 -2.91 -0.02 -2.98 16 45 H 0.14 2.77 7.62 -2.91 -0.02 2.74 16 Total: -1.00 -84.88 368.51 3.75 -81.13 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -0.23 Total: 11.07 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 5.31 Total: -19.61 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -3.10 Total: -84.93 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.12 Total: -34.37 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -84.88 3.75 -81.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861730176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.903 kcal (2) G-P(sol) polarization free energy of solvation -84.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds