Wall clock time and date at job start Tue Mar 31 2020 15:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50703 * 120.00035 * 2 1 4 4 C 1.50705 * 120.00059 * 180.02562 * 2 1 3 5 5 C 1.52994 * 109.46984 * 93.83151 * 4 2 1 6 6 H 1.09010 * 109.46972 * 305.39802 * 5 4 2 7 7 C 1.53007 * 109.46882 * 185.40421 * 5 4 2 8 8 O 1.42896 * 109.46645 * 304.66503 * 7 5 4 9 9 N 1.46493 * 109.47571 * 65.39903 * 5 4 2 10 10 C 1.34783 * 120.00289 * 205.57057 * 9 5 4 11 11 O 1.21670 * 119.99723 * 4.92490 * 10 9 5 12 12 C 1.46883 * 120.00084 * 184.92247 * 10 9 5 13 13 C 1.36123 * 125.44057 * 185.89917 * 12 10 9 14 14 C 1.41694 * 107.75442 * 180.27859 * 13 12 10 15 15 C 1.40020 * 133.35639 * 179.77981 * 14 13 12 16 16 C 1.36574 * 119.83421 * 179.97438 * 15 14 13 17 17 C 1.38860 * 120.60131 * 359.95801 * 16 15 14 18 18 C 1.37845 * 120.62806 * 0.02562 * 17 16 15 19 19 C 1.39078 * 119.81955 * 359.97438 * 18 17 16 20 20 N 1.37834 * 133.16721 * 180.02562 * 19 18 17 21 21 C 1.36888 * 125.61790 * 359.97438 * 20 19 18 22 22 H 1.08000 * 119.99950 * 225.35685 * 21 20 19 23 23 C 1.39014 * 120.00254 * 45.35824 * 21 20 19 24 24 N 1.31346 * 120.00047 * 198.16398 * 23 21 20 25 25 Si 1.86796 * 119.99706 * 18.16469 * 23 21 20 26 26 H 1.48505 * 109.47097 * 264.52148 * 25 23 21 27 27 H 1.48502 * 109.47389 * 24.52366 * 25 23 21 28 28 H 1.48503 * 109.47158 * 144.52346 * 25 23 21 29 29 H 1.07996 * 120.00077 * 180.02562 * 1 2 3 30 30 H 1.08006 * 120.00366 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47060 * 275.09559 * 3 2 1 32 32 H 1.08995 * 109.47272 * 35.09009 * 3 2 1 33 33 H 1.09001 * 109.47183 * 155.09122 * 3 2 1 34 34 H 1.08996 * 109.47132 * 333.83027 * 4 2 1 35 35 H 1.09005 * 109.46936 * 213.82709 * 4 2 1 36 36 H 1.08994 * 109.46956 * 64.66417 * 7 5 4 37 37 H 1.09005 * 109.46479 * 184.66762 * 7 5 4 38 38 H 0.96708 * 113.99491 * 180.02562 * 8 7 5 39 39 H 0.96998 * 120.00073 * 25.57567 * 9 5 4 40 40 H 1.08002 * 126.12054 * 0.02562 * 13 12 10 41 41 H 1.08009 * 120.07929 * 359.97438 * 15 14 13 42 42 H 1.08002 * 119.70042 * 179.97438 * 16 15 14 43 43 H 1.07995 * 119.67993 * 180.02562 * 17 16 15 44 44 H 1.08000 * 120.08627 * 179.97438 * 18 17 16 45 45 H 0.97001 * 119.99642 * 174.98667 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4019 -1.6979 -1.4400 6 1 1.4892 -1.7163 -2.0358 7 6 3.0467 -3.0855 -1.4518 8 8 4.1821 -3.0903 -0.5842 9 7 3.3351 -0.7209 -2.0063 10 6 3.3860 -0.5319 -3.3399 11 8 2.5963 -1.1058 -4.0661 12 6 4.3946 0.3668 -3.9163 13 6 4.4749 0.7262 -5.2268 14 6 5.5851 1.5951 -5.3693 15 6 6.1482 2.2638 -6.4631 16 6 7.2478 3.0536 -6.2838 17 6 7.8143 3.2015 -5.0247 18 6 7.2777 2.5536 -3.9327 19 6 6.1579 1.7439 -4.0904 20 7 5.4113 0.9861 -3.2140 21 6 5.6427 0.8619 -1.8705 22 1 5.6109 -0.1121 -1.4049 23 6 5.9185 1.9893 -1.1055 24 7 6.4823 1.8609 0.0738 25 14 5.4874 3.6869 -1.7548 26 1 6.6801 4.2852 -2.4066 27 1 4.3868 3.5733 -2.7452 28 1 5.0526 4.5518 -0.6287 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5401 0.9353 0.0004 31 1 2.1661 1.6654 -1.0236 32 1 1.5170 2.0402 0.5907 33 1 3.0523 1.1537 0.4328 34 1 1.4464 -2.0811 0.4523 35 1 2.9845 -1.1931 0.5716 36 1 2.3236 -3.8250 -1.1080 37 1 3.3630 -3.3304 -2.4658 38 1 4.6416 -3.9403 -0.5426 39 1 3.9165 -0.2101 -1.4216 40 1 3.8135 0.4032 -6.0172 41 1 5.7139 2.1552 -7.4461 42 1 7.6807 3.5681 -7.1291 43 1 8.6835 3.8301 -4.8998 44 1 7.7255 2.6745 -2.9574 45 1 6.7412 2.6493 0.5761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882894662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:27 Heat of formation + Delta-G solvation = -9.498183 kcal Electronic energy + Delta-G solvation = -29147.057187 eV Core-core repulsion = 25323.385022 eV Total energy + Delta-G solvation = -3823.672165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.82604 -39.10341 -37.17816 -36.16719 -35.82106 -33.85404 -33.31486 -31.40576 -30.33577 -29.12730 -28.10817 -26.92752 -26.03613 -24.94783 -23.52443 -21.17965 -21.09819 -20.00137 -19.36805 -18.53639 -18.15693 -17.33719 -16.53446 -15.87005 -15.71663 -15.16489 -14.94291 -14.68522 -14.44390 -14.19933 -13.83409 -13.64241 -13.56037 -13.34164 -13.21974 -13.04870 -12.81639 -12.60668 -12.27441 -12.05016 -11.94645 -11.62969 -11.45234 -11.26395 -11.09868 -11.00721 -10.94449 -10.62749 -10.52913 -10.28652 -9.94250 -9.88206 -9.52583 -9.41362 -8.88024 -8.75194 -8.41471 -7.39417 -7.01917 -6.92119 -4.73111 1.58383 2.42073 2.45534 2.82462 2.97685 3.08953 3.16635 3.76457 3.82549 4.05825 4.13999 4.49552 4.56503 4.74182 4.90075 5.12417 5.19116 5.43636 5.48499 5.55639 5.60998 5.65188 5.68280 5.84182 5.88796 5.89933 5.98040 6.08250 6.15051 6.16736 6.22049 6.28080 6.39794 6.43631 6.59366 6.74675 6.81502 6.82482 7.02826 7.13921 7.14670 7.22073 7.32066 7.54213 7.62167 7.72555 7.79215 8.06357 8.28078 8.57984 8.91793 8.99671 10.02814 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012979 B = 0.005292 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.888394 B = 5289.842964 C = 6111.313331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.106 4.106 3 C -0.125 4.125 4 C -0.090 4.090 5 C 0.152 3.848 6 H 0.097 0.903 7 C 0.064 3.936 8 O -0.561 6.561 9 N -0.710 5.710 10 C 0.594 3.406 11 O -0.562 6.562 12 C -0.011 4.011 13 C -0.161 4.161 14 C -0.126 4.126 15 C -0.076 4.076 16 C -0.160 4.160 17 C -0.130 4.130 18 C -0.103 4.103 19 C 0.065 3.935 20 N -0.274 5.274 21 C -0.375 4.375 22 H 0.127 0.873 23 C 0.091 3.909 24 N -0.819 5.819 25 Si 0.866 3.134 26 H -0.247 1.247 27 H -0.253 1.253 28 H -0.280 1.280 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.374 0.626 39 H 0.423 0.577 40 H 0.137 0.863 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 -2.935 -0.082 5.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.106 4.106 3 C -0.182 4.182 4 C -0.128 4.128 5 C 0.046 3.954 6 H 0.115 0.885 7 C -0.015 4.015 8 O -0.365 6.365 9 N -0.369 5.369 10 C 0.383 3.617 11 O -0.442 6.442 12 C -0.126 4.126 13 C -0.188 4.188 14 C -0.131 4.131 15 C -0.095 4.095 16 C -0.180 4.180 17 C -0.150 4.150 18 C -0.123 4.123 19 C -0.049 4.049 20 N 0.061 4.939 21 C -0.502 4.502 22 H 0.144 0.856 23 C -0.125 4.125 24 N -0.447 5.447 25 Si 0.690 3.310 26 H -0.172 1.172 27 H -0.176 1.176 28 H -0.206 1.206 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.220 0.780 39 H 0.270 0.730 40 H 0.155 0.845 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.991 -2.719 0.225 5.688 hybrid contribution 0.344 0.451 0.085 0.574 sum -4.647 -2.267 0.309 5.180 Atomic orbital electron populations 1.23556 0.95153 1.01412 1.04728 1.21771 0.95240 0.95947 0.97630 1.20942 1.00605 0.94104 1.02518 1.20908 1.01146 0.94664 0.96032 1.20972 0.93112 0.87111 0.94165 0.88533 1.22658 0.88099 0.97089 0.93658 1.86571 1.44211 1.38214 1.67529 1.46685 1.41418 1.41296 1.07498 1.17231 0.82410 0.79993 0.82083 1.90710 1.41893 1.50737 1.60818 1.20252 0.93718 1.05597 0.92991 1.20462 1.00599 1.03105 0.94609 1.18015 0.99030 1.03119 0.92963 1.20175 0.95866 0.96804 0.96647 1.20354 0.98374 1.02532 0.96696 1.20592 1.00516 1.01452 0.92433 1.20172 0.95234 0.97715 0.99145 1.18449 0.96126 1.01026 0.89316 1.40269 1.16690 1.30877 1.06048 1.19272 1.53741 0.97145 0.80018 0.85558 1.25448 0.92902 0.99630 0.94498 1.69645 1.30612 1.32736 1.11746 0.86953 0.82074 0.82520 0.79471 1.17156 1.17612 1.20619 0.88789 0.88793 0.91188 0.92307 0.90908 0.90338 0.89393 0.93316 0.93133 0.78013 0.73013 0.84485 0.87136 0.87275 0.86990 0.86447 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.81 13.91 29.02 0.40 -2.40 16 2 C -0.11 -1.58 5.13 -101.06 -0.52 -2.10 16 3 C -0.13 -2.06 9.20 36.01 0.33 -1.72 16 4 C -0.09 -1.31 4.63 -27.88 -0.13 -1.43 16 5 C 0.15 2.46 2.40 -67.93 -0.16 2.29 16 6 H 0.10 1.59 7.49 -51.92 -0.39 1.21 16 7 C 0.06 0.91 6.85 37.16 0.25 1.17 16 8 O -0.56 -8.21 12.84 -35.23 -0.45 -8.66 16 9 N -0.71 -13.89 4.22 -55.05 -0.23 -14.12 16 10 C 0.59 13.07 7.74 -12.76 -0.10 12.97 16 11 O -0.56 -12.89 16.47 5.22 0.09 -12.80 16 12 C -0.01 -0.26 6.77 -82.25 -0.56 -0.81 16 13 C -0.16 -3.55 10.55 -39.02 -0.41 -3.96 16 14 C -0.13 -2.77 6.16 -106.89 -0.66 -3.43 16 15 C -0.08 -1.42 10.06 -39.51 -0.40 -1.82 16 16 C -0.16 -2.80 9.97 -39.95 -0.40 -3.20 16 17 C -0.13 -2.42 10.02 -39.50 -0.40 -2.82 16 18 C -0.10 -2.24 6.94 -39.41 -0.27 -2.51 16 19 C 0.06 1.51 5.15 -83.84 -0.43 1.08 16 20 N -0.27 -6.56 2.36 -56.08 -0.13 -6.69 16 21 C -0.38 -9.13 7.99 -15.01 -0.12 -9.25 16 22 H 0.13 3.23 6.77 -52.49 -0.36 2.88 16 23 C 0.09 2.19 4.95 -17.47 -0.09 2.10 16 24 N -0.82 -20.02 13.95 55.50 0.77 -19.25 16 25 Si 0.87 19.48 24.43 -169.99 -4.15 15.32 16 26 H -0.25 -5.38 5.81 56.52 0.33 -5.05 16 27 H -0.25 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 29 H 0.09 1.09 8.00 -52.49 -0.42 0.67 16 30 H 0.09 1.17 8.05 -52.48 -0.42 0.75 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.07 1.30 8.02 -51.93 -0.42 0.88 16 34 H 0.08 0.95 8.00 -51.93 -0.42 0.54 16 35 H 0.09 1.41 7.66 -51.93 -0.40 1.02 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.37 3.75 9.12 45.56 0.42 4.16 16 39 H 0.42 8.83 4.27 -40.82 -0.17 8.66 16 40 H 0.14 2.76 8.06 -52.49 -0.42 2.34 16 41 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 42 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 43 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.12 2.60 6.13 -52.49 -0.32 2.28 16 45 H 0.29 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 369.30 15.07 5.57 5.57 Total: -1.00 -28.16 369.30 -7.68 -35.84 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -5.49 Total: 20.66 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -3.65 Total: -15.86 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.41 Total: -40.06 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.37 Total: -21.46 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.15 Total: 15.32 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.16 -7.68 -35.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882894662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.342 kcal (2) G-P(sol) polarization free energy of solvation -28.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds