Wall clock time and date at job start Tue Mar 31 2020 14:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46982 * 2 1 4 4 O 1.34037 * 126.77374 * 270.02100 * 3 2 1 5 5 N 1.20926 * 111.56693 * 179.97438 * 4 3 2 6 6 C 1.30166 * 111.60308 * 0.02562 * 5 4 3 7 7 C 1.50705 * 126.80350 * 179.97438 * 6 5 4 8 8 C 1.35449 * 126.77856 * 89.98495 * 3 2 1 9 9 C 1.50696 * 128.00825 * 0.06449 * 8 3 2 10 10 N 1.46501 * 109.47171 * 269.98430 * 9 8 3 11 11 C 1.34778 * 119.99951 * 179.97438 * 10 9 8 12 12 O 1.21284 * 120.00151 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99874 * 179.97438 * 11 10 9 14 14 C 1.50708 * 109.46798 * 180.02562 * 13 11 10 15 15 C 1.37637 * 120.12667 * 264.99857 * 14 13 11 16 16 C 1.38618 * 120.24563 * 179.97438 * 15 14 13 17 17 C 1.38654 * 120.50266 * 0.02562 * 16 15 14 18 18 C 1.37593 * 120.24779 * 0.02562 * 17 16 15 19 19 C 1.40696 * 120.12366 * 84.73096 * 14 13 11 20 20 C 1.41388 * 120.24712 * 359.97438 * 19 14 13 21 21 H 1.08001 * 120.00150 * 333.90787 * 20 19 14 22 22 C 1.39950 * 119.99965 * 153.90071 * 20 19 14 23 23 N 1.30820 * 119.99916 * 343.71578 * 22 20 19 24 24 Si 1.86797 * 120.00011 * 163.70967 * 22 20 19 25 25 H 1.48502 * 109.47359 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47226 * 120.00503 * 24 22 20 27 27 H 1.48504 * 109.47086 * 240.00387 * 24 22 20 28 28 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47253 * 300.00189 * 1 2 3 30 30 H 1.08998 * 109.47413 * 59.99714 * 1 2 3 31 31 H 1.08994 * 109.47222 * 239.99418 * 2 1 3 32 32 H 1.09001 * 109.47017 * 119.99433 * 2 1 3 33 33 H 1.09000 * 109.47083 * 90.01840 * 7 6 5 34 34 H 1.08997 * 109.47626 * 210.02540 * 7 6 5 35 35 H 1.09005 * 109.46815 * 330.02485 * 7 6 5 36 36 H 1.09004 * 109.46881 * 29.98446 * 9 8 3 37 37 H 1.09001 * 109.47110 * 149.98353 * 9 8 3 38 38 H 0.96998 * 120.00297 * 359.97438 * 10 9 8 39 39 H 1.08997 * 109.46953 * 299.99951 * 13 11 10 40 40 H 1.09001 * 109.47174 * 60.00309 * 13 11 10 41 41 H 1.08004 * 119.87516 * 0.02562 * 15 14 13 42 42 H 1.08001 * 119.74728 * 179.97438 * 16 15 14 43 43 H 1.07994 * 119.87847 * 179.97438 * 17 16 15 44 44 H 1.08001 * 120.12785 * 179.97438 * 18 17 16 45 45 H 0.97003 * 120.00302 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2994 2.1775 -1.0736 5 7 2.6880 3.2778 -0.7565 6 6 2.7369 3.4143 0.5371 7 6 3.1704 4.6397 1.2999 8 6 2.3023 2.1855 1.0849 9 6 2.1714 1.8124 2.5390 10 7 0.8265 2.1510 3.0109 11 6 0.4790 1.9044 4.2896 12 8 1.2798 1.4025 5.0497 13 6 -0.9043 2.2532 4.7751 14 6 -1.0352 1.8799 6.2294 15 6 -1.5744 0.6644 6.5847 16 6 -1.6955 0.3183 7.9215 17 6 -1.2765 1.1901 8.9150 18 6 -0.7355 2.4109 8.5829 19 6 -0.6015 2.7702 7.2287 20 6 -0.0403 4.0190 6.8754 21 1 0.4427 4.1422 5.9173 22 6 -0.1109 5.0953 7.7671 23 7 -0.9508 5.0603 8.7694 24 14 0.9944 6.5817 7.5262 25 1 1.8476 6.3753 6.3284 26 1 0.1587 7.7944 7.3363 27 1 1.8562 6.7569 8.7228 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3059 5.2774 1.4846 34 1 3.6100 4.3391 2.2509 35 1 3.9089 5.1889 0.7157 36 1 2.3386 0.7416 2.6558 37 1 2.9103 2.3613 3.1229 38 1 0.1860 2.5527 2.4032 39 1 -1.0709 3.3241 4.6589 40 1 -1.6435 1.7050 4.1910 41 1 -1.9037 -0.0225 5.8191 42 1 -2.1202 -0.6373 8.1913 43 1 -1.3759 0.9103 9.9533 44 1 -0.4101 3.0886 9.3583 45 1 -1.0001 5.8064 9.3873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886673388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:19 Heat of formation + Delta-G solvation = 23.702890 kcal Electronic energy + Delta-G solvation = -27634.764686 eV Core-core repulsion = 23812.532228 eV Total energy + Delta-G solvation = -3822.232459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.12867 -39.26174 -37.40080 -36.07670 -34.79860 -33.62010 -33.58557 -31.73809 -30.53886 -29.43991 -28.88010 -27.68893 -26.00521 -24.84673 -24.12560 -21.86239 -20.92384 -20.56953 -20.12538 -19.34152 -17.81064 -17.34957 -17.10414 -16.30471 -15.73932 -15.52060 -15.23960 -14.68055 -14.50493 -14.41840 -13.75747 -13.57335 -13.49775 -13.34673 -13.14696 -13.10349 -12.82315 -12.62739 -12.55494 -12.40516 -11.80433 -11.71688 -11.60174 -11.55483 -11.17160 -11.08263 -10.98514 -10.96930 -10.66974 -10.37903 -10.14668 -9.60586 -9.47243 -9.36113 -9.15918 -9.06653 -8.76808 -7.29596 -7.27682 -6.72393 -4.32977 1.20770 1.93532 2.79007 2.85271 2.99921 3.07858 3.12253 3.27494 3.32165 3.78053 3.94241 4.00013 4.19053 4.58953 4.63865 4.67664 4.85884 4.91431 5.00824 5.29789 5.35060 5.40389 5.50589 5.52501 5.60675 5.69039 5.71853 5.77426 5.82019 5.89364 6.00789 6.04727 6.15740 6.29616 6.44097 6.52450 6.70032 6.81600 7.10094 7.31234 7.43873 7.65527 7.87120 7.95865 8.09055 8.09137 8.14791 8.33072 8.66444 8.83392 8.93295 9.03234 10.21753 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.003708 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.619269 B = 7550.444897 C = 9444.348663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.045 4.045 3 C -0.009 4.009 4 O 0.096 5.904 5 N -0.369 5.369 6 C 0.036 3.964 7 C -0.080 4.080 8 C -0.216 4.216 9 C 0.202 3.798 10 N -0.741 5.741 11 C 0.516 3.484 12 O -0.519 6.519 13 C -0.070 4.070 14 C -0.181 4.181 15 C -0.081 4.081 16 C -0.239 4.239 17 C -0.107 4.107 18 C -0.159 4.159 19 C 0.129 3.871 20 C -0.456 4.456 21 H 0.074 0.926 22 C 0.077 3.923 23 N -0.795 5.795 24 Si 0.902 3.098 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.272 1.272 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.396 0.604 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.117 0.883 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.421 -4.251 -15.759 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 C -0.073 4.073 4 O 0.033 5.967 5 N -0.076 5.076 6 C -0.123 4.123 7 C -0.137 4.137 8 C -0.220 4.220 9 C 0.078 3.922 10 N -0.396 5.396 11 C 0.304 3.696 12 O -0.392 6.392 13 C -0.109 4.109 14 C -0.183 4.183 15 C -0.099 4.099 16 C -0.259 4.259 17 C -0.126 4.126 18 C -0.179 4.179 19 C 0.127 3.873 20 C -0.486 4.486 21 H 0.092 0.908 22 C -0.140 4.140 23 N -0.421 5.421 24 Si 0.727 3.273 25 H -0.185 1.185 26 H -0.201 1.201 27 H -0.197 1.197 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.229 0.771 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.135 0.865 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.222 -3.670 -16.013 16.962 hybrid contribution 0.133 0.679 0.365 0.782 sum 4.355 -2.991 -15.648 16.516 Atomic orbital electron populations 1.21790 0.93069 1.03024 1.02944 1.20184 0.97032 0.86286 1.04783 1.24407 1.00293 0.96804 0.85831 1.84813 1.61502 1.17572 1.32825 1.73864 1.18035 0.99590 1.16101 1.23504 1.01091 0.97775 0.89919 1.20229 1.02255 0.92145 0.99087 1.21031 1.09510 0.94222 0.97217 1.19257 0.86212 1.00684 0.86029 1.46215 1.14060 1.66755 1.12611 1.21269 0.90891 0.77280 0.80186 1.90691 1.52546 1.41798 1.54204 1.20259 0.91806 1.03029 0.95848 1.19047 1.09836 0.97594 0.91803 1.20292 0.99634 0.95049 0.94958 1.20303 1.12613 0.99858 0.93110 1.20675 1.00063 0.95126 0.96715 1.21300 1.04184 0.95447 0.96929 1.17336 0.87671 0.91498 0.90819 1.19497 1.32408 0.94348 1.02320 0.90754 1.25874 0.93987 1.00063 0.94114 1.69826 1.28349 1.31368 1.12547 0.86365 0.80761 0.80612 0.79606 1.18526 1.20061 1.19734 0.91083 0.91690 0.92118 0.89327 0.88312 0.89769 0.89664 0.90553 0.90645 0.90442 0.77098 0.88603 0.90652 0.89795 0.89702 0.89617 0.86546 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.04 -0.32 6.35 -27.88 -0.18 -0.50 16 3 C -0.01 -0.09 6.74 -35.30 -0.24 -0.33 16 4 O 0.10 1.13 11.20 17.18 0.19 1.32 16 5 N -0.37 -4.80 12.07 33.42 0.40 -4.40 16 6 C 0.04 0.44 7.33 -82.10 -0.60 -0.16 16 7 C -0.08 -0.82 10.39 36.01 0.37 -0.45 16 8 C -0.22 -2.44 5.69 -104.42 -0.59 -3.03 16 9 C 0.20 2.55 5.99 -5.19 -0.03 2.52 16 10 N -0.74 -10.16 5.55 -61.47 -0.34 -10.50 16 11 C 0.52 9.51 7.44 -10.99 -0.08 9.43 16 12 O -0.52 -11.90 16.03 5.55 0.09 -11.81 16 13 C -0.07 -1.31 5.18 -29.03 -0.15 -1.47 16 14 C -0.18 -4.27 4.43 -103.91 -0.46 -4.73 16 15 C -0.08 -1.84 9.66 -39.66 -0.38 -2.22 16 16 C -0.24 -5.52 10.05 -39.29 -0.39 -5.92 16 17 C -0.11 -2.60 10.02 -39.66 -0.40 -3.00 16 18 C -0.16 -4.23 8.69 -38.87 -0.34 -4.57 16 19 C 0.13 3.41 5.56 -106.82 -0.59 2.81 16 20 C -0.46 -11.83 8.14 -37.74 -0.31 -12.14 16 21 H 0.07 1.87 6.67 -52.49 -0.35 1.52 16 22 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 23 N -0.80 -20.39 10.96 55.55 0.61 -19.78 16 24 Si 0.90 18.67 29.59 -169.99 -5.03 13.64 16 25 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 27 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.68 7.44 -51.93 -0.39 0.30 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.86 7.66 -51.93 -0.40 0.46 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.94 7.45 -51.93 -0.39 0.55 16 37 H 0.08 1.07 7.66 -51.93 -0.40 0.67 16 38 H 0.40 4.55 8.46 -40.82 -0.35 4.20 16 39 H 0.10 1.80 7.08 -51.93 -0.37 1.43 16 40 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 41 H 0.08 1.66 8.06 -52.48 -0.42 1.23 16 42 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 44 H 0.12 3.18 6.21 -52.49 -0.33 2.86 16 45 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 LS Contribution 381.44 15.07 5.75 5.75 Total: -1.00 -31.23 381.44 -8.74 -39.97 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.31 Total: 8.41 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -4.10 Total: -22.60 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.67 Total: -34.68 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.28 Total: -10.49 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.23 -8.74 -39.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886673388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.674 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds