Wall clock time and date at job start Tue Mar 31 2020 15:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46750 * 252.07480 * 3 2 1 5 5 C 1.53001 * 109.47017 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47066 * 179.97438 * 5 4 3 7 7 O 1.21277 * 120.00126 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99799 * 180.02562 * 6 5 4 9 9 N 1.40104 * 120.00116 * 180.02562 * 8 6 5 10 10 C 1.34774 * 120.00116 * 179.97438 * 9 8 6 11 11 O 1.21284 * 120.00090 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99980 * 179.97438 * 10 9 8 13 13 C 1.52994 * 109.46995 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.47363 * 54.05802 * 13 12 10 15 15 C 1.50705 * 109.47281 * 294.05789 * 13 12 10 16 16 H 1.07999 * 119.99468 * 330.08103 * 15 13 12 17 17 C 1.37873 * 120.00025 * 150.08844 * 15 13 12 18 18 N 1.31511 * 120.00099 * 6.55948 * 17 15 13 19 19 Si 1.86805 * 119.99647 * 186.56809 * 17 15 13 20 20 H 1.48498 * 109.47129 * 269.99471 * 19 17 15 21 21 H 1.48498 * 109.47291 * 29.99590 * 19 17 15 22 22 H 1.48503 * 109.46813 * 149.99580 * 19 17 15 23 23 C 1.50704 * 109.47072 * 174.05777 * 13 12 10 24 24 C 1.38232 * 120.00156 * 64.29986 * 23 13 12 25 25 C 1.38227 * 120.00423 * 179.81276 * 24 23 13 26 26 C 1.38243 * 119.99751 * 0.39675 * 25 24 23 27 27 C 1.38236 * 119.99618 * 359.85625 * 26 25 24 28 28 C 1.38229 * 120.00074 * 359.95579 * 27 26 25 29 29 H 4.44647 * 5.63245 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.46904 * 132.07552 * 3 2 1 31 31 H 1.08992 * 109.47258 * 12.07012 * 3 2 1 32 32 H 1.08997 * 109.47582 * 59.99857 * 4 3 2 33 33 H 1.09002 * 109.46864 * 299.99869 * 4 3 2 34 34 H 1.08999 * 109.46886 * 59.99920 * 5 4 3 35 35 H 1.09001 * 109.46961 * 300.00371 * 5 4 3 36 36 H 0.97001 * 120.00043 * 359.97438 * 8 6 5 37 37 H 0.97001 * 119.99840 * 359.97438 * 9 8 6 38 38 H 1.08999 * 109.46642 * 59.99829 * 12 10 9 39 39 H 1.09002 * 109.46876 * 299.99722 * 12 10 9 40 40 H 0.96995 * 120.00371 * 354.73583 * 18 17 15 41 41 H 1.08007 * 119.99790 * 359.97438 * 24 23 13 42 42 H 1.08004 * 120.00499 * 180.23296 * 25 24 23 43 43 H 1.08002 * 119.99679 * 179.83680 * 26 25 24 44 44 H 1.08002 * 119.99754 * 179.97438 * 27 26 25 45 45 H 1.08000 * 119.99707 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.4449 1.3725 5 6 4.6858 0.4462 1.3724 6 6 5.1878 0.8843 2.7241 7 8 4.3996 1.1681 3.6010 8 7 6.5128 0.9618 2.9581 9 7 6.9796 1.3686 4.2148 10 6 8.3046 1.4456 4.4490 11 8 9.0929 1.1623 3.5719 12 6 8.8068 1.8837 5.8007 13 6 10.3367 1.8844 5.8007 14 1 10.6998 2.4902 4.9705 15 6 10.8397 0.4719 5.6495 16 1 10.2558 -0.3529 6.0305 17 6 12.0454 0.2326 5.0251 18 7 12.8168 1.2392 4.6768 19 14 12.5831 -1.5215 4.6734 20 1 13.3604 -2.0416 5.8269 21 1 11.3854 -2.3729 4.4594 22 1 13.4310 -1.5444 3.4545 23 6 10.8388 2.4601 7.0998 24 6 10.5800 1.8078 8.2907 25 6 11.0438 2.3338 9.4819 26 6 11.7595 3.5166 9.4830 27 6 12.0137 4.1716 8.2926 28 6 11.5532 3.6435 7.1011 29 1 -1.0500 -0.0003 -0.0002 30 1 3.0090 0.6895 -0.7628 31 1 3.0098 -1.0040 -0.2149 32 1 2.7927 -0.2439 2.1354 33 1 2.7919 1.4497 1.5874 34 1 5.0484 1.1353 0.6097 35 1 5.0499 -0.5584 1.1572 36 1 7.1433 0.7352 2.2566 37 1 6.3492 1.5948 4.9164 38 1 8.4440 1.1950 6.5637 39 1 8.4426 2.8885 6.0153 40 1 12.5050 2.1507 4.7894 41 1 10.0176 0.8857 8.2902 42 1 10.8449 1.8222 10.4120 43 1 12.1196 3.9289 10.4140 44 1 12.5725 5.0959 8.2935 45 1 11.7522 4.1551 6.1710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887147933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:41 Heat of formation + Delta-G solvation = 17.988510 kcal Electronic energy + Delta-G solvation = -26340.961063 eV Core-core repulsion = 22518.480811 eV Total energy + Delta-G solvation = -3822.480253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.20808 -39.00733 -38.26766 -35.99434 -35.13183 -34.23454 -32.72874 -31.68454 -30.96120 -30.14608 -28.95921 -27.83498 -25.09438 -23.22863 -22.67176 -21.72971 -21.19625 -20.49429 -19.61249 -18.50910 -17.62151 -17.30614 -16.77523 -16.30393 -16.09789 -15.55176 -15.12380 -14.81505 -14.60519 -14.20754 -14.07435 -13.90653 -13.71708 -13.37640 -13.04708 -12.99307 -12.77215 -12.49965 -12.39319 -11.97337 -11.90241 -11.62135 -11.32253 -11.21496 -10.85294 -10.75690 -10.53570 -10.47685 -10.38820 -10.26842 -10.15562 -10.09659 -9.74940 -9.37842 -8.71624 -8.34412 -8.17410 -8.10626 -7.69011 -6.29933 -3.98456 2.00146 2.15752 2.23456 2.39894 2.54134 2.55753 3.24447 3.45665 3.51100 3.64748 3.98093 4.16454 4.54642 4.58032 4.62967 4.66686 4.76835 5.07786 5.13651 5.24513 5.29073 5.34130 5.53394 5.56970 5.59237 5.71865 5.73463 5.78725 5.88457 5.94935 5.96254 6.09982 6.27166 6.35433 6.55161 6.73296 6.85264 6.89025 6.95422 7.12410 7.19079 7.33039 7.33422 7.65243 7.79630 7.81462 8.05550 8.14244 8.44013 8.79287 8.90898 9.70989 11.10336 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014464 B = 0.002405 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.438899 B =11639.463659 C =12984.304152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.185 4.185 3 C -0.015 4.015 4 C -0.098 4.098 5 C -0.132 4.132 6 C 0.509 3.491 7 O -0.549 6.549 8 N -0.520 5.520 9 N -0.544 5.544 10 C 0.516 3.484 11 O -0.498 6.498 12 C -0.107 4.107 13 C 0.073 3.927 14 H 0.053 0.947 15 C -0.571 4.571 16 H 0.047 0.953 17 C 0.032 3.968 18 N -0.904 5.904 19 Si 1.067 2.933 20 H -0.291 1.291 21 H -0.290 1.290 22 H -0.285 1.285 23 C -0.033 4.033 24 C -0.107 4.107 25 C -0.129 4.129 26 C -0.151 4.151 27 C -0.124 4.124 28 C -0.129 4.129 29 H 0.216 0.784 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.431 0.569 37 H 0.424 0.576 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.270 0.730 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.056 0.849 -4.043 16.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.185 4.185 3 C -0.051 4.051 4 C -0.136 4.136 5 C -0.173 4.173 6 C 0.295 3.705 7 O -0.426 6.426 8 N -0.266 5.266 9 N -0.297 5.297 10 C 0.303 3.697 11 O -0.368 6.368 12 C -0.149 4.149 13 C 0.054 3.946 14 H 0.071 0.929 15 C -0.608 4.608 16 H 0.065 0.935 17 C -0.173 4.173 18 N -0.540 5.540 19 Si 0.896 3.104 20 H -0.218 1.218 21 H -0.217 1.217 22 H -0.211 1.211 23 C -0.033 4.033 24 C -0.126 4.126 25 C -0.147 4.147 26 C -0.170 4.170 27 C -0.142 4.142 28 C -0.147 4.147 29 H 0.233 0.767 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.272 0.728 37 H 0.265 0.735 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.714 -0.068 -4.682 15.441 hybrid contribution -1.319 0.794 0.687 1.686 sum -16.033 0.727 -3.994 16.539 Atomic orbital electron populations 1.24919 0.96022 1.01268 1.00743 1.23092 0.94571 1.00313 1.00490 1.18770 0.84892 1.03062 0.98385 1.21277 0.92486 1.03696 0.96161 1.21603 0.97482 1.04214 0.94030 1.20861 0.80467 0.78308 0.90883 1.90716 1.54817 1.50390 1.46670 1.44915 1.06956 1.67905 1.06822 1.45507 1.07704 1.71625 1.04833 1.21318 0.79042 0.77513 0.91778 1.90765 1.53909 1.46319 1.45786 1.21685 1.00647 1.00677 0.91867 1.17876 0.87602 0.98529 0.90598 0.92894 1.21559 1.08531 0.89846 1.40913 0.93499 1.25596 0.93281 1.05277 0.93193 1.70730 1.36746 1.00207 1.46276 0.83582 0.75486 0.74622 0.76716 1.21778 1.21666 1.21097 1.20756 0.94533 0.91349 0.96706 1.20920 1.00571 0.99245 0.91818 1.21018 0.99571 0.96425 0.97699 1.20840 1.01907 0.96921 0.97291 1.20968 1.00530 0.99712 0.93031 1.21056 0.99922 0.96447 0.97259 0.76718 0.89310 0.89286 0.90541 0.90571 0.88088 0.88033 0.72774 0.73467 0.89578 0.90907 0.91794 0.86673 0.87397 0.87548 0.87424 0.87135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.74 19.25 29.55 0.57 -1.17 16 2 C -0.18 -1.64 13.34 -37.12 -0.50 -2.14 16 3 C -0.01 -0.10 5.70 -29.52 -0.17 -0.26 16 4 C -0.10 -0.80 4.46 -26.73 -0.12 -0.91 16 5 C -0.13 -0.98 5.70 -27.88 -0.16 -1.14 16 6 C 0.51 6.13 7.95 -10.99 -0.09 6.04 16 7 O -0.55 -8.41 15.82 5.56 0.09 -8.33 16 8 N -0.52 -6.95 6.26 31.22 0.20 -6.75 16 9 N -0.54 -8.35 6.26 31.22 0.20 -8.16 16 10 C 0.52 9.73 7.70 -10.98 -0.08 9.65 16 11 O -0.50 -11.45 14.86 5.55 0.08 -11.37 16 12 C -0.11 -1.97 4.94 -27.88 -0.14 -2.10 16 13 C 0.07 1.67 1.31 -92.92 -0.12 1.55 16 14 H 0.05 1.36 6.23 -51.93 -0.32 1.04 16 15 C -0.57 -14.94 6.40 -34.44 -0.22 -15.16 16 16 H 0.05 1.24 7.82 -52.49 -0.41 0.83 16 17 C 0.03 0.91 5.45 -17.82 -0.10 0.81 16 18 N -0.90 -26.82 13.63 55.43 0.76 -26.07 16 19 Si 1.07 25.62 29.91 -169.99 -5.08 20.53 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.03 -0.70 4.77 -104.62 -0.50 -1.20 16 24 C -0.11 -2.12 8.88 -39.59 -0.35 -2.47 16 25 C -0.13 -2.26 10.05 -39.58 -0.40 -2.66 16 26 C -0.15 -2.57 10.05 -39.58 -0.40 -2.96 16 27 C -0.12 -2.22 10.05 -39.59 -0.40 -2.62 16 28 C -0.13 -2.61 9.67 -39.59 -0.38 -2.99 16 29 H 0.22 1.05 7.80 -54.09 -0.42 0.63 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.73 8.10 -51.93 -0.42 0.30 16 33 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.43 5.38 8.00 -182.59 -1.46 3.92 16 37 H 0.42 5.88 8.00 -182.59 -1.46 4.42 16 38 H 0.09 1.47 7.86 -51.93 -0.41 1.06 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.27 7.92 6.68 -40.82 -0.27 7.65 16 41 H 0.12 2.21 7.80 -52.48 -0.41 1.80 16 42 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 43 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 44 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.11 2.20 7.95 -52.49 -0.42 1.78 16 LS Contribution 392.95 15.07 5.92 5.92 Total: -1.00 -34.90 392.95 -10.00 -44.89 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -8.61 Total: 9.07 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -3.55 Total: -19.75 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 1.15 Total: -40.97 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.17 Total: -19.70 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.90 -10.00 -44.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887147933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.883 kcal (2) G-P(sol) polarization free energy of solvation -34.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds