Wall clock time and date at job start Tue Mar 31 2020 15:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46750 * 252.07480 * 3 2 1 5 5 C 1.53001 * 109.47017 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47066 * 179.97438 * 5 4 3 7 7 O 1.21277 * 120.00126 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99799 * 180.02562 * 6 5 4 9 9 N 1.40104 * 120.00116 * 180.02562 * 8 6 5 10 10 C 1.34774 * 120.00116 * 179.97438 * 9 8 6 11 11 O 1.21284 * 120.00090 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99980 * 179.97438 * 10 9 8 13 13 C 1.52994 * 109.46995 * 179.97438 * 12 10 9 14 14 H 1.08998 * 109.47363 * 54.05802 * 13 12 10 15 15 C 1.50705 * 109.47281 * 294.05789 * 13 12 10 16 16 H 1.07999 * 119.99468 * 330.08103 * 15 13 12 17 17 C 1.37873 * 120.00025 * 150.08844 * 15 13 12 18 18 N 1.31511 * 120.00099 * 6.55948 * 17 15 13 19 19 Si 1.86805 * 119.99647 * 186.56809 * 17 15 13 20 20 H 1.48498 * 109.47129 * 269.99471 * 19 17 15 21 21 H 1.48498 * 109.47291 * 29.99590 * 19 17 15 22 22 H 1.48503 * 109.46813 * 149.99580 * 19 17 15 23 23 C 1.50704 * 109.47072 * 174.05777 * 13 12 10 24 24 C 1.38232 * 120.00156 * 64.29986 * 23 13 12 25 25 C 1.38227 * 120.00423 * 179.81276 * 24 23 13 26 26 C 1.38243 * 119.99751 * 0.39675 * 25 24 23 27 27 C 1.38236 * 119.99618 * 359.85625 * 26 25 24 28 28 C 1.38229 * 120.00074 * 359.95579 * 27 26 25 29 29 H 4.44647 * 5.63245 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.46904 * 132.07552 * 3 2 1 31 31 H 1.08992 * 109.47258 * 12.07012 * 3 2 1 32 32 H 1.08997 * 109.47582 * 59.99857 * 4 3 2 33 33 H 1.09002 * 109.46864 * 299.99869 * 4 3 2 34 34 H 1.08999 * 109.46886 * 59.99920 * 5 4 3 35 35 H 1.09001 * 109.46961 * 300.00371 * 5 4 3 36 36 H 0.97001 * 120.00043 * 359.97438 * 8 6 5 37 37 H 0.97001 * 119.99840 * 359.97438 * 9 8 6 38 38 H 1.08999 * 109.46642 * 59.99829 * 12 10 9 39 39 H 1.09002 * 109.46876 * 299.99722 * 12 10 9 40 40 H 0.96995 * 120.00371 * 354.73583 * 18 17 15 41 41 H 1.08007 * 119.99790 * 359.97438 * 24 23 13 42 42 H 1.08004 * 120.00499 * 180.23296 * 25 24 23 43 43 H 1.08002 * 119.99679 * 179.83680 * 26 25 24 44 44 H 1.08002 * 119.99754 * 179.97438 * 27 26 25 45 45 H 1.08000 * 119.99707 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.4449 1.3725 5 6 4.6858 0.4462 1.3724 6 6 5.1878 0.8843 2.7241 7 8 4.3996 1.1681 3.6010 8 7 6.5128 0.9618 2.9581 9 7 6.9796 1.3686 4.2148 10 6 8.3046 1.4456 4.4490 11 8 9.0929 1.1623 3.5719 12 6 8.8068 1.8837 5.8007 13 6 10.3367 1.8844 5.8007 14 1 10.6998 2.4902 4.9705 15 6 10.8397 0.4719 5.6495 16 1 10.2558 -0.3529 6.0305 17 6 12.0454 0.2326 5.0251 18 7 12.8168 1.2392 4.6768 19 14 12.5831 -1.5215 4.6734 20 1 13.3604 -2.0416 5.8269 21 1 11.3854 -2.3729 4.4594 22 1 13.4310 -1.5444 3.4545 23 6 10.8388 2.4601 7.0998 24 6 10.5800 1.8078 8.2907 25 6 11.0438 2.3338 9.4819 26 6 11.7595 3.5166 9.4830 27 6 12.0137 4.1716 8.2926 28 6 11.5532 3.6435 7.1011 29 1 -1.0500 -0.0003 -0.0002 30 1 3.0090 0.6895 -0.7628 31 1 3.0098 -1.0040 -0.2149 32 1 2.7927 -0.2439 2.1354 33 1 2.7919 1.4497 1.5874 34 1 5.0484 1.1353 0.6097 35 1 5.0499 -0.5584 1.1572 36 1 7.1433 0.7352 2.2566 37 1 6.3492 1.5948 4.9164 38 1 8.4440 1.1950 6.5637 39 1 8.4426 2.8885 6.0153 40 1 12.5050 2.1507 4.7894 41 1 10.0176 0.8857 8.2902 42 1 10.8449 1.8222 10.4120 43 1 12.1196 3.9289 10.4140 44 1 12.5725 5.0959 8.2935 45 1 11.7522 4.1551 6.1710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887147933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:36 Heat of formation + Delta-G solvation = -3.453457 kcal Electronic energy + Delta-G solvation = -26341.890857 eV Core-core repulsion = 22518.480811 eV Total energy + Delta-G solvation = -3823.410046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -41.42248 -40.40138 -39.69731 -36.81843 -36.33860 -35.89527 -33.61176 -33.28727 -32.27563 -31.59701 -30.30786 -28.65917 -26.89010 -24.80403 -23.61620 -23.19301 -22.44595 -21.75045 -21.03971 -19.23758 -18.87875 -18.70606 -18.31529 -17.47949 -17.11100 -16.85206 -16.53215 -15.90191 -15.67362 -15.62670 -15.58319 -15.34339 -14.92084 -14.62617 -14.60068 -14.04981 -13.98887 -13.66568 -13.53790 -13.51108 -13.19634 -12.82339 -12.61660 -12.53735 -12.26823 -12.06296 -11.95536 -11.95451 -11.74394 -11.50263 -11.34511 -11.14730 -10.95511 -10.89896 -10.64146 -10.34825 -9.63224 -9.37335 -9.27432 -8.43994 -6.10653 0.68457 0.71351 0.92423 1.34465 1.50433 1.60663 1.74666 1.82264 1.89564 1.94152 2.61864 3.03576 3.11970 3.38376 3.53086 3.60209 4.00149 4.07821 4.12597 4.15512 4.27236 4.29178 4.42130 4.46362 4.49378 4.60229 4.65374 4.68667 4.80932 4.81698 4.85935 5.03950 5.19321 5.21900 5.22440 5.32435 5.39637 5.42581 5.67771 5.75668 5.77816 5.84046 5.94663 6.23447 6.31409 6.39947 6.56643 6.73496 6.78822 6.93999 7.43558 7.64846 8.96356 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014464 B = 0.002405 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.438899 B =11639.463659 C =12984.304152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.216 4.216 3 C -0.011 4.011 4 C -0.092 4.092 5 C -0.122 4.122 6 C 0.509 3.491 7 O -0.583 6.583 8 N -0.522 5.522 9 N -0.534 5.534 10 C 0.519 3.481 11 O -0.547 6.547 12 C -0.104 4.104 13 C 0.075 3.925 14 H 0.014 0.986 15 C -0.559 4.559 16 H 0.041 0.959 17 C -0.023 4.023 18 N -0.940 5.940 19 Si 1.102 2.898 20 H -0.278 1.278 21 H -0.278 1.278 22 H -0.291 1.291 23 C -0.056 4.056 24 C -0.123 4.123 25 C -0.126 4.126 26 C -0.145 4.145 27 C -0.126 4.126 28 C -0.150 4.150 29 H 0.239 0.761 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.435 0.565 37 H 0.433 0.567 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.259 0.741 41 H 0.115 0.885 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.134 0.866 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.078 0.466 -2.985 17.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.216 4.216 3 C -0.048 4.048 4 C -0.130 4.130 5 C -0.163 4.163 6 C 0.298 3.702 7 O -0.462 6.462 8 N -0.270 5.270 9 N -0.284 5.284 10 C 0.306 3.694 11 O -0.421 6.421 12 C -0.145 4.145 13 C 0.056 3.944 14 H 0.032 0.968 15 C -0.597 4.597 16 H 0.059 0.941 17 C -0.222 4.222 18 N -0.579 5.579 19 Si 0.928 3.072 20 H -0.204 1.204 21 H -0.203 1.203 22 H -0.217 1.217 23 C -0.057 4.057 24 C -0.141 4.141 25 C -0.143 4.143 26 C -0.162 4.162 27 C -0.144 4.144 28 C -0.169 4.169 29 H 0.255 0.745 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.277 0.723 37 H 0.275 0.725 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.070 0.930 41 H 0.133 0.867 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.152 0.848 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.797 -0.450 -3.600 16.209 hybrid contribution -1.164 0.993 0.430 1.590 sum -16.962 0.543 -3.170 17.264 Atomic orbital electron populations 1.25708 0.97114 1.00873 1.00131 1.23807 0.95810 1.00839 1.01113 1.18843 0.83786 1.04517 0.97633 1.21177 0.92870 1.02231 0.96751 1.21709 0.96735 1.06350 0.91515 1.21808 0.79371 0.76865 0.92134 1.90705 1.55441 1.51797 1.48222 1.45207 1.07664 1.68234 1.05859 1.45189 1.06851 1.70204 1.06196 1.21272 0.79729 0.76987 0.91370 1.90748 1.55373 1.48889 1.47127 1.21576 0.97874 1.02714 0.92331 1.17702 0.90236 0.96118 0.90361 0.96820 1.21804 1.07512 0.91414 1.38977 0.94105 1.26716 0.94322 1.07557 0.93626 1.70820 1.37725 1.00072 1.49263 0.83111 0.75691 0.71754 0.76691 1.20385 1.20320 1.21706 1.20590 0.96022 0.92629 0.96454 1.21019 1.01414 0.99428 0.92198 1.21405 0.98369 0.96544 0.98028 1.21308 1.00381 0.96224 0.98326 1.21299 0.99999 1.00636 0.92446 1.21127 1.00844 0.96832 0.98077 0.74484 0.87466 0.87542 0.92392 0.92304 0.85147 0.85284 0.72253 0.72462 0.88004 0.88284 0.93033 0.86682 0.84080 0.83716 0.84782 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.41 19.25 74.32 1.43 -1.98 16 2 C -0.22 -3.62 13.34 31.13 0.42 -3.20 16 3 C -0.01 -0.13 5.70 28.79 0.16 0.03 16 4 C -0.09 -1.38 4.46 30.60 0.14 -1.24 16 5 C -0.12 -1.54 5.70 29.85 0.17 -1.37 16 6 C 0.51 11.72 7.95 87.66 0.70 12.41 16 7 O -0.58 -17.61 15.82 -3.02 -0.05 -17.66 16 8 N -0.52 -13.59 6.26 -173.54 -1.09 -14.67 16 9 N -0.53 -16.23 6.26 -173.53 -1.09 -17.32 16 10 C 0.52 19.84 7.70 87.66 0.68 20.52 16 11 O -0.55 -26.02 14.86 -3.04 -0.05 -26.06 16 12 C -0.10 -3.84 4.94 29.85 0.15 -3.69 16 13 C 0.08 3.56 1.31 -12.29 -0.02 3.54 16 14 H 0.01 0.75 6.23 -2.39 -0.01 0.73 16 15 C -0.56 -29.99 6.40 25.60 0.16 -29.82 16 16 H 0.04 2.18 7.82 -2.91 -0.02 2.16 16 17 C -0.02 -1.35 5.45 84.65 0.46 -0.88 16 18 N -0.94 -58.14 13.63 21.45 0.29 -57.84 16 19 Si 1.10 52.45 29.91 68.60 2.05 54.50 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 23 C -0.06 -2.44 4.77 -19.87 -0.09 -2.53 16 24 C -0.12 -4.72 8.88 22.27 0.20 -4.52 16 25 C -0.13 -4.03 10.05 22.27 0.22 -3.81 16 26 C -0.14 -4.40 10.05 22.27 0.22 -4.17 16 27 C -0.13 -4.28 10.05 22.27 0.22 -4.05 16 28 C -0.15 -6.19 9.67 22.27 0.22 -5.97 16 29 H 0.24 2.01 7.80 -4.42 -0.03 1.98 16 30 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 1.07 8.10 -2.39 -0.02 1.06 16 33 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 34 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.43 10.61 8.00 -213.32 -1.71 8.90 16 37 H 0.43 11.74 8.00 -213.32 -1.71 10.03 16 38 H 0.10 3.43 7.86 -2.39 -0.02 3.41 16 39 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.26 16.08 6.68 -92.71 -0.62 15.46 16 41 H 0.12 4.32 7.80 -2.91 -0.02 4.29 16 42 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 43 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 44 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 45 H 0.10 4.13 7.95 -2.91 -0.02 4.10 16 Total: -1.00 -79.46 392.95 3.26 -76.21 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -2.26 Total: 33.59 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 5.43 Total: -30.75 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -1.88 Total: -89.84 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -0.09 Total: -43.72 kcal Atomic # 14 Polarization: 52.45 SS G_CDS: 2.05 Total: 54.50 kcal Total: -79.46 3.26 -76.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887147933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.752 kcal (2) G-P(sol) polarization free energy of solvation -79.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds