Wall clock time and date at job start Tue Mar 31 2020 15:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47450 * 283.68750 * 3 2 1 5 5 N 1.46500 * 109.54554 * 297.06602 * 4 3 2 6 6 C 1.34782 * 119.99629 * 297.70513 * 5 4 3 7 7 O 1.21577 * 119.99973 * 5.41723 * 6 5 4 8 8 N 1.34772 * 119.99956 * 185.42244 * 6 5 4 9 9 C 1.39243 * 120.00158 * 174.95640 * 8 6 5 10 10 C 1.39482 * 119.83253 * 215.84147 * 9 8 6 11 11 C 1.36383 * 120.16344 * 179.75979 * 10 9 8 12 12 C 1.40866 * 119.82955 * 0.54193 * 11 10 9 13 13 C 1.41150 * 120.16654 * 179.69797 * 12 11 10 14 14 H 1.07993 * 120.00568 * 170.24647 * 13 12 11 15 15 C 1.39901 * 119.99774 * 350.24408 * 13 12 11 16 16 N 1.30886 * 119.99813 * 323.46910 * 15 13 12 17 17 Si 1.86800 * 120.00191 * 143.47029 * 15 13 12 18 18 H 1.48493 * 109.47290 * 94.99453 * 17 15 13 19 19 H 1.48502 * 109.46836 * 214.99842 * 17 15 13 20 20 H 1.48501 * 109.46773 * 334.99246 * 17 15 13 21 21 C 1.40868 * 119.67012 * 359.71305 * 12 11 10 22 22 C 1.36373 * 119.83279 * 0.02562 * 21 12 11 23 23 C 1.53183 * 109.54154 * 57.23914 * 4 3 2 24 24 C 1.53277 * 109.06538 * 176.85236 * 23 4 3 25 25 O 1.42895 * 109.46238 * 302.44680 * 24 23 4 26 26 C 1.42902 * 114.09830 * 61.15574 * 25 24 23 27 27 C 1.53087 * 109.41685 * 298.84452 * 26 25 24 28 28 H 4.44652 * 5.63329 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.46738 * 163.69185 * 3 2 1 30 30 H 1.08998 * 109.47281 * 43.69342 * 3 2 1 31 31 H 0.96998 * 120.00680 * 117.70580 * 5 4 3 32 32 H 0.97004 * 120.00000 * 354.95186 * 8 6 5 33 33 H 1.07991 * 119.91706 * 0.02562 * 10 9 8 34 34 H 1.07996 * 120.07857 * 180.25498 * 11 10 9 35 35 H 0.96998 * 120.00100 * 180.02562 * 16 15 13 36 36 H 1.08001 * 120.08633 * 179.97438 * 21 12 11 37 37 H 1.08006 * 119.91897 * 179.97438 * 22 21 12 38 38 H 1.09009 * 109.52044 * 296.84316 * 23 4 3 39 39 H 1.09002 * 109.51934 * 57.02851 * 23 4 3 40 40 H 1.09005 * 109.45663 * 182.44462 * 24 23 4 41 41 H 1.09006 * 109.46811 * 62.44830 * 24 23 4 42 42 H 1.09003 * 109.48252 * 178.86264 * 26 25 24 43 43 H 1.08993 * 109.49186 * 58.83253 * 26 25 24 44 44 H 1.09008 * 109.52264 * 297.69865 * 27 26 25 45 45 H 1.09002 * 109.57637 * 177.55043 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.3404 1.4015 5 7 2.7269 0.6949 2.3448 6 6 3.1484 1.9656 2.1884 7 8 3.8032 2.2729 1.2113 8 7 2.8439 2.8954 3.1153 9 6 3.3661 4.1818 3.0088 10 6 3.7211 4.8842 4.1604 11 6 4.2378 6.1426 4.0636 12 6 4.4019 6.7372 2.7971 13 6 4.9300 8.0417 2.6891 14 1 5.2022 8.4357 1.7211 15 6 5.1008 8.8244 3.8360 16 7 4.2277 8.7589 4.8090 17 14 6.5748 9.9629 3.9789 18 1 6.1913 11.3273 3.5357 19 1 7.0282 10.0106 5.3923 20 1 7.6769 9.4556 3.1225 21 6 4.0361 6.0235 1.6390 22 6 3.5257 4.7639 1.7513 23 6 2.5912 -1.6961 1.8366 24 6 3.1708 -2.0636 3.2072 25 8 4.5975 -2.0867 3.1300 26 6 5.1829 -0.8332 2.7723 27 6 4.6860 -0.4166 1.3855 28 1 -1.0499 0.0002 0.0002 29 1 3.0089 0.9872 -0.2886 30 1 3.0097 -0.7422 -0.7099 31 1 2.1394 0.4661 3.0820 32 1 2.2609 2.6685 3.8567 33 1 3.5905 4.4287 5.1308 34 1 4.5160 6.6836 4.9559 35 1 4.3459 9.3018 5.6040 36 1 4.1586 6.4731 0.6647 37 1 3.2444 4.2156 0.8643 38 1 1.5049 -1.6336 1.9030 39 1 2.8693 -2.4575 1.1078 40 1 2.8067 -3.0473 3.5035 41 1 2.8586 -1.3233 3.9439 42 1 6.2685 -0.9305 2.7553 43 1 4.8973 -0.0767 3.5031 44 1 5.0064 -1.1522 0.6476 45 1 5.0967 0.5598 1.1284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887213927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:38 Heat of formation + Delta-G solvation = 2.925558 kcal Electronic energy + Delta-G solvation = -27945.469471 eV Core-core repulsion = 24122.336039 eV Total energy + Delta-G solvation = -3823.133431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.86317 -39.03685 -37.37868 -36.04576 -34.37144 -33.40383 -32.92598 -31.39075 -31.28837 -29.47933 -28.76444 -28.37729 -24.98599 -23.89169 -23.50971 -21.95209 -21.00807 -20.17971 -19.47365 -18.24539 -17.89799 -17.29690 -16.69999 -16.15627 -16.13347 -15.45131 -15.21561 -15.09619 -14.73462 -14.47203 -14.01722 -13.90241 -13.43705 -13.13142 -12.99182 -12.88077 -12.73619 -12.53253 -12.27958 -12.05230 -11.97346 -11.52190 -11.34650 -11.10943 -11.00480 -10.92042 -10.67725 -10.52811 -10.33877 -10.21284 -10.07630 -9.77560 -9.63637 -9.45609 -9.06516 -8.87091 -8.58589 -7.49605 -7.15424 -6.92460 -4.22320 2.67941 2.78882 2.86650 3.00010 3.03467 3.06392 3.15698 3.23008 3.68990 3.73995 3.86781 4.22193 4.44070 4.47874 4.61915 4.67652 4.75433 4.88901 4.98352 5.26739 5.39423 5.46649 5.50939 5.58631 5.65933 5.73339 5.78617 5.88820 5.95397 6.09463 6.13835 6.23928 6.49539 6.66568 6.83794 6.89922 6.98990 7.04111 7.14548 7.34369 7.39277 7.62314 7.63356 7.93230 8.02106 8.08645 8.28488 8.54424 8.58872 8.86974 8.95010 9.16538 9.94664 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020333 B = 0.002776 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.767937 B =10084.912106 C =10641.611443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.163 4.163 3 C -0.032 4.032 4 C 0.210 3.790 5 N -0.745 5.745 6 C 0.699 3.301 7 O -0.577 6.577 8 N -0.664 5.664 9 C -0.011 4.011 10 C -0.103 4.103 11 C -0.184 4.184 12 C 0.106 3.894 13 C -0.461 4.461 14 H 0.082 0.918 15 C 0.089 3.911 16 N -0.760 5.760 17 Si 0.896 3.104 18 H -0.269 1.269 19 H -0.273 1.273 20 H -0.256 1.256 21 C -0.231 4.231 22 C -0.064 4.064 23 C -0.157 4.157 24 C 0.062 3.938 25 O -0.384 6.384 26 C 0.065 3.935 27 C -0.168 4.168 28 H 0.213 0.787 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.390 0.610 32 H 0.388 0.612 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.283 0.717 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.049 0.951 42 H 0.094 0.906 43 H 0.053 0.947 44 H 0.077 0.923 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.064 -18.059 -1.225 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.163 4.163 3 C -0.069 4.069 4 C 0.122 3.878 5 N -0.402 5.402 6 C 0.400 3.600 7 O -0.454 6.454 8 N -0.309 5.309 9 C -0.103 4.103 10 C -0.123 4.123 11 C -0.203 4.203 12 C 0.103 3.897 13 C -0.488 4.488 14 H 0.100 0.900 15 C -0.133 4.133 16 N -0.383 5.383 17 Si 0.719 3.281 18 H -0.194 1.194 19 H -0.198 1.198 20 H -0.180 1.180 21 C -0.251 4.251 22 C -0.084 4.084 23 C -0.195 4.195 24 C -0.015 4.015 25 O -0.302 6.302 26 C -0.012 4.012 27 C -0.206 4.206 28 H 0.230 0.770 29 H 0.135 0.865 30 H 0.107 0.893 31 H 0.224 0.776 32 H 0.221 0.779 33 H 0.104 0.896 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.112 0.888 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.403 -17.854 -1.846 18.269 hybrid contribution -0.487 0.628 0.844 1.159 sum -3.889 -17.225 -1.002 17.688 Atomic orbital electron populations 1.24766 0.95813 1.02591 1.01398 1.22979 0.94285 0.99235 0.99768 1.19359 0.85087 1.05569 0.96932 1.19939 0.93853 0.86088 0.87875 1.45252 1.54998 1.07141 1.32807 1.15962 0.80178 0.79921 0.83903 1.90810 1.44821 1.79656 1.30158 1.42071 1.51064 1.10113 1.27646 1.16841 1.14813 0.84367 0.94261 1.20136 1.01487 0.96040 0.94640 1.20808 1.06825 0.94557 0.98155 1.17578 0.88254 0.92677 0.91152 1.19540 1.36787 0.98201 0.94263 0.90033 1.26016 0.95822 0.96508 0.94991 1.69991 1.29583 1.32010 1.06667 0.86514 0.82845 0.80003 0.78784 1.19406 1.19833 1.17976 1.20501 1.11286 0.96184 0.97168 1.20345 0.98658 0.94155 0.95213 1.22550 1.01460 0.96315 0.99203 1.22564 0.81621 1.01909 0.95411 1.87916 1.19263 1.33019 1.90048 1.22541 0.98131 0.85414 0.95070 1.22643 0.94626 1.04864 0.98513 0.77041 0.86493 0.89263 0.77617 0.77929 0.89595 0.86513 0.90560 0.89028 0.87630 0.90084 0.89405 0.88838 0.93266 0.88800 0.92878 0.90392 0.87682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -2.55 19.25 29.55 0.57 -1.99 16 2 C -0.16 -2.01 11.67 -37.12 -0.43 -2.44 16 3 C -0.03 -0.39 4.67 -29.52 -0.14 -0.52 16 4 C 0.21 2.31 0.35 -131.64 -0.05 2.27 16 5 N -0.75 -9.07 3.84 -52.25 -0.20 -9.27 16 6 C 0.70 11.73 7.79 -86.92 -0.68 11.05 16 7 O -0.58 -11.54 10.01 5.30 0.05 -11.49 16 8 N -0.66 -11.65 5.31 -14.10 -0.07 -11.72 16 9 C -0.01 -0.24 6.29 -83.57 -0.53 -0.76 16 10 C -0.10 -2.36 9.90 -39.79 -0.39 -2.75 16 11 C -0.18 -4.72 8.84 -39.26 -0.35 -5.07 16 12 C 0.11 2.85 5.68 -106.80 -0.61 2.24 16 13 C -0.46 -12.19 8.94 -37.86 -0.34 -12.52 16 14 H 0.08 2.09 8.04 -52.49 -0.42 1.67 16 15 C 0.09 2.19 4.84 -17.33 -0.08 2.11 16 16 N -0.76 -18.91 11.29 55.55 0.63 -18.29 16 17 Si 0.90 18.07 29.68 -169.99 -5.04 13.03 16 18 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 20 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 21 C -0.23 -5.93 9.74 -39.26 -0.38 -6.31 16 22 C -0.06 -1.54 8.61 -39.79 -0.34 -1.88 16 23 C -0.16 -1.35 4.61 -26.49 -0.12 -1.48 16 24 C 0.06 0.54 6.67 37.30 0.25 0.79 16 25 O -0.38 -4.32 10.77 -35.23 -0.38 -4.70 16 26 C 0.06 0.74 6.68 37.20 0.25 0.99 16 27 C -0.17 -1.96 4.73 -26.60 -0.13 -2.09 16 28 H 0.21 1.68 7.80 -54.09 -0.42 1.26 16 29 H 0.12 1.77 6.09 -51.93 -0.32 1.45 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.39 3.87 7.63 -40.82 -0.31 3.56 16 32 H 0.39 5.52 8.84 -40.82 -0.36 5.16 16 33 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.12 3.05 5.87 -52.49 -0.31 2.75 16 35 H 0.28 6.30 8.30 -40.82 -0.34 5.97 16 36 H 0.09 2.25 8.06 -52.49 -0.42 1.82 16 37 H 0.11 2.54 6.26 -52.48 -0.33 2.21 16 38 H 0.08 0.66 7.28 -51.92 -0.38 0.28 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.41 7.15 -51.93 -0.37 0.03 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.67 7.75 -51.93 -0.40 0.27 16 44 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 45 H 0.10 1.54 6.14 -51.93 -0.32 1.22 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -30.08 365.44 -9.04 -39.12 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -6.03 Total: 16.19 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -3.50 Total: -18.37 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.35 Total: -39.28 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.33 Total: -16.19 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.04 Total: 13.03 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.08 -9.04 -39.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887213927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.044 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds