Wall clock time and date at job start Tue Mar 31 2020 15:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47450 * 283.68750 * 3 2 1 5 5 N 1.46500 * 109.54554 * 297.06602 * 4 3 2 6 6 C 1.34782 * 119.99629 * 297.70513 * 5 4 3 7 7 O 1.21577 * 119.99973 * 5.41723 * 6 5 4 8 8 N 1.34772 * 119.99956 * 185.42244 * 6 5 4 9 9 C 1.39243 * 120.00158 * 174.95640 * 8 6 5 10 10 C 1.39482 * 119.83253 * 215.84147 * 9 8 6 11 11 C 1.36383 * 120.16344 * 179.75979 * 10 9 8 12 12 C 1.40866 * 119.82955 * 0.54193 * 11 10 9 13 13 C 1.41150 * 120.16654 * 179.69797 * 12 11 10 14 14 H 1.07993 * 120.00568 * 170.24647 * 13 12 11 15 15 C 1.39901 * 119.99774 * 350.24408 * 13 12 11 16 16 N 1.30886 * 119.99813 * 323.46910 * 15 13 12 17 17 Si 1.86800 * 120.00191 * 143.47029 * 15 13 12 18 18 H 1.48493 * 109.47290 * 94.99453 * 17 15 13 19 19 H 1.48502 * 109.46836 * 214.99842 * 17 15 13 20 20 H 1.48501 * 109.46773 * 334.99246 * 17 15 13 21 21 C 1.40868 * 119.67012 * 359.71305 * 12 11 10 22 22 C 1.36373 * 119.83279 * 0.02562 * 21 12 11 23 23 C 1.53183 * 109.54154 * 57.23914 * 4 3 2 24 24 C 1.53277 * 109.06538 * 176.85236 * 23 4 3 25 25 O 1.42895 * 109.46238 * 302.44680 * 24 23 4 26 26 C 1.42902 * 114.09830 * 61.15574 * 25 24 23 27 27 C 1.53087 * 109.41685 * 298.84452 * 26 25 24 28 28 H 4.44652 * 5.63329 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.46738 * 163.69185 * 3 2 1 30 30 H 1.08998 * 109.47281 * 43.69342 * 3 2 1 31 31 H 0.96998 * 120.00680 * 117.70580 * 5 4 3 32 32 H 0.97004 * 120.00000 * 354.95186 * 8 6 5 33 33 H 1.07991 * 119.91706 * 0.02562 * 10 9 8 34 34 H 1.07996 * 120.07857 * 180.25498 * 11 10 9 35 35 H 0.96998 * 120.00100 * 180.02562 * 16 15 13 36 36 H 1.08001 * 120.08633 * 179.97438 * 21 12 11 37 37 H 1.08006 * 119.91897 * 179.97438 * 22 21 12 38 38 H 1.09009 * 109.52044 * 296.84316 * 23 4 3 39 39 H 1.09002 * 109.51934 * 57.02851 * 23 4 3 40 40 H 1.09005 * 109.45663 * 182.44462 * 24 23 4 41 41 H 1.09006 * 109.46811 * 62.44830 * 24 23 4 42 42 H 1.09003 * 109.48252 * 178.86264 * 26 25 24 43 43 H 1.08993 * 109.49186 * 58.83253 * 26 25 24 44 44 H 1.09008 * 109.52264 * 297.69865 * 27 26 25 45 45 H 1.09002 * 109.57637 * 177.55043 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.3404 1.4015 5 7 2.7269 0.6949 2.3448 6 6 3.1484 1.9656 2.1884 7 8 3.8032 2.2729 1.2113 8 7 2.8439 2.8954 3.1153 9 6 3.3661 4.1818 3.0088 10 6 3.7211 4.8842 4.1604 11 6 4.2378 6.1426 4.0636 12 6 4.4019 6.7372 2.7971 13 6 4.9300 8.0417 2.6891 14 1 5.2022 8.4357 1.7211 15 6 5.1008 8.8244 3.8360 16 7 4.2277 8.7589 4.8090 17 14 6.5748 9.9629 3.9789 18 1 6.1913 11.3273 3.5357 19 1 7.0282 10.0106 5.3923 20 1 7.6769 9.4556 3.1225 21 6 4.0361 6.0235 1.6390 22 6 3.5257 4.7639 1.7513 23 6 2.5912 -1.6961 1.8366 24 6 3.1708 -2.0636 3.2072 25 8 4.5975 -2.0867 3.1300 26 6 5.1829 -0.8332 2.7723 27 6 4.6860 -0.4166 1.3855 28 1 -1.0499 0.0002 0.0002 29 1 3.0089 0.9872 -0.2886 30 1 3.0097 -0.7422 -0.7099 31 1 2.1394 0.4661 3.0820 32 1 2.2609 2.6685 3.8567 33 1 3.5905 4.4287 5.1308 34 1 4.5160 6.6836 4.9559 35 1 4.3459 9.3018 5.6040 36 1 4.1586 6.4731 0.6647 37 1 3.2444 4.2156 0.8643 38 1 1.5049 -1.6336 1.9030 39 1 2.8693 -2.4575 1.1078 40 1 2.8067 -3.0473 3.5035 41 1 2.8586 -1.3233 3.9439 42 1 6.2685 -0.9305 2.7553 43 1 4.8973 -0.0767 3.5031 44 1 5.0064 -1.1522 0.6476 45 1 5.0967 0.5598 1.1284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887213927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:37 Heat of formation + Delta-G solvation = -14.869880 kcal Electronic energy + Delta-G solvation = -27946.241139 eV Core-core repulsion = 24122.336039 eV Total energy + Delta-G solvation = -3823.905099 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.98956 -40.33553 -38.98476 -37.16030 -36.03637 -34.92615 -34.10030 -32.55498 -32.08821 -31.37425 -30.53999 -29.28830 -26.77392 -24.71482 -24.47791 -23.52420 -22.74351 -21.78073 -20.54209 -19.55961 -19.17990 -18.84309 -18.05129 -17.25296 -16.99197 -16.95225 -16.47106 -16.33224 -15.88613 -15.68604 -15.57707 -15.07362 -14.97014 -14.52533 -14.19765 -13.96069 -13.92498 -13.86692 -13.75939 -13.46868 -13.25075 -13.07099 -12.81879 -12.67224 -12.36255 -12.28846 -11.94088 -11.78731 -11.54517 -11.46954 -11.31575 -11.18103 -11.00315 -10.72481 -10.54097 -10.36681 -9.96265 -9.43010 -8.99854 -8.74893 -6.17539 0.90945 1.19276 1.37274 1.45634 1.57876 1.77532 1.91466 1.98963 2.18112 2.26176 2.65060 2.94361 3.34866 3.39366 3.69394 3.76787 3.81328 3.92086 4.02963 4.25589 4.40038 4.42113 4.52559 4.60618 4.66813 4.71463 4.78201 4.82374 4.94927 4.98482 5.02879 5.07321 5.10560 5.13808 5.22812 5.26302 5.32697 5.51567 5.62895 5.67148 5.82051 6.07160 6.18425 6.23530 6.27550 6.39206 6.65735 6.75096 6.91537 7.04773 7.21390 7.75632 8.14384 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020333 B = 0.002776 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.767937 B =10084.912106 C =10641.611443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.198 4.198 3 C -0.029 4.029 4 C 0.208 3.792 5 N -0.724 5.724 6 C 0.699 3.301 7 O -0.609 6.609 8 N -0.661 5.661 9 C 0.007 3.993 10 C -0.101 4.101 11 C -0.204 4.204 12 C 0.078 3.922 13 C -0.501 4.501 14 H 0.073 0.927 15 C 0.054 3.946 16 N -0.786 5.786 17 Si 0.971 3.029 18 H -0.258 1.258 19 H -0.259 1.259 20 H -0.263 1.263 21 C -0.253 4.253 22 C -0.073 4.073 23 C -0.145 4.145 24 C 0.056 3.944 25 O -0.393 6.393 26 C 0.070 3.930 27 C -0.165 4.165 28 H 0.241 0.759 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.405 0.595 32 H 0.408 0.592 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.296 0.704 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.118 0.882 41 H 0.054 0.946 42 H 0.098 0.902 43 H 0.039 0.961 44 H 0.093 0.907 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 -20.036 0.006 20.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.198 4.198 3 C -0.067 4.067 4 C 0.121 3.879 5 N -0.381 5.381 6 C 0.400 3.600 7 O -0.489 6.489 8 N -0.308 5.308 9 C -0.087 4.087 10 C -0.121 4.121 11 C -0.224 4.224 12 C 0.075 3.925 13 C -0.528 4.528 14 H 0.091 0.909 15 C -0.167 4.167 16 N -0.409 5.409 17 Si 0.791 3.209 18 H -0.182 1.182 19 H -0.183 1.183 20 H -0.187 1.187 21 C -0.273 4.273 22 C -0.093 4.093 23 C -0.183 4.183 24 C -0.021 4.021 25 O -0.312 6.312 26 C -0.007 4.007 27 C -0.203 4.203 28 H 0.257 0.743 29 H 0.099 0.901 30 H 0.125 0.875 31 H 0.241 0.759 32 H 0.243 0.757 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.136 0.864 41 H 0.072 0.928 42 H 0.116 0.884 43 H 0.058 0.942 44 H 0.111 0.889 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.273 -19.891 -0.590 20.353 hybrid contribution -0.356 1.086 0.410 1.214 sum -4.629 -18.805 -0.180 19.367 Atomic orbital electron populations 1.25522 0.96599 1.00964 0.99959 1.23188 0.94738 1.00708 1.01183 1.19248 0.85469 1.04122 0.97853 1.20104 0.93544 0.86916 0.87293 1.45066 1.54173 1.05595 1.33230 1.16087 0.79877 0.80992 0.83055 1.90813 1.46157 1.80486 1.31454 1.41875 1.51550 1.08675 1.28706 1.16838 1.12697 0.85872 0.93253 1.20386 1.00239 0.95212 0.96282 1.20841 1.08306 0.95804 0.97401 1.17881 0.89201 0.93464 0.91949 1.19733 1.39007 0.98996 0.95070 0.90851 1.26797 0.98054 0.97819 0.94029 1.69967 1.30763 1.32841 1.07281 0.85380 0.78388 0.77974 0.79178 1.18207 1.18308 1.18685 1.20611 1.12574 0.97130 0.97004 1.20423 0.98962 0.93752 0.96174 1.22489 1.01915 0.94427 0.99466 1.22802 0.80270 1.03548 0.95433 1.87913 1.20843 1.32461 1.89996 1.22437 0.98564 0.85392 0.94294 1.22569 0.95079 1.03444 0.99235 0.74264 0.90110 0.87459 0.75853 0.75660 0.86376 0.87325 0.89299 0.89450 0.87915 0.88943 0.88296 0.86443 0.92758 0.88394 0.94239 0.88855 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.22 19.25 74.32 1.43 -2.79 16 2 C -0.20 -4.57 11.67 31.12 0.36 -4.21 16 3 C -0.03 -0.69 4.67 28.79 0.13 -0.55 16 4 C 0.21 4.29 0.35 3.72 0.00 4.29 16 5 N -0.72 -16.56 3.84 -437.47 -1.68 -18.24 16 6 C 0.70 23.13 7.79 179.05 1.40 24.52 16 7 O -0.61 -24.99 10.01 -3.96 -0.04 -25.03 16 8 N -0.66 -22.48 5.31 -316.79 -1.68 -24.16 16 9 C 0.01 0.32 6.29 38.56 0.24 0.56 16 10 C -0.10 -4.60 9.90 22.14 0.22 -4.38 16 11 C -0.20 -10.70 8.84 22.48 0.20 -10.50 16 12 C 0.08 4.35 5.68 -21.28 -0.12 4.23 16 13 C -0.50 -27.62 8.94 23.39 0.21 -27.42 16 14 H 0.07 3.99 8.04 -2.91 -0.02 3.96 16 15 C 0.05 2.69 4.84 85.24 0.41 3.10 16 16 N -0.79 -39.50 11.29 21.82 0.25 -39.25 16 17 Si 0.97 37.31 29.68 68.60 2.04 39.35 16 18 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 19 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 C -0.25 -13.63 9.74 22.48 0.22 -13.41 16 22 C -0.07 -3.63 8.61 22.13 0.19 -3.44 16 23 C -0.15 -2.05 4.61 30.75 0.14 -1.91 16 24 C 0.06 0.79 6.67 72.08 0.48 1.27 16 25 O -0.39 -7.92 10.77 -148.98 -1.60 -9.53 16 26 C 0.07 1.52 6.68 72.01 0.48 2.01 16 27 C -0.16 -3.75 4.73 30.68 0.15 -3.60 16 28 H 0.24 2.97 7.80 -4.42 -0.03 2.94 16 29 H 0.08 2.53 6.09 -2.39 -0.01 2.51 16 30 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.41 6.98 7.63 -92.71 -0.71 6.27 16 32 H 0.41 10.69 8.84 -92.71 -0.82 9.87 16 33 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 34 H 0.11 5.80 5.87 -2.91 -0.02 5.79 16 35 H 0.30 13.08 8.30 -92.71 -0.77 12.31 16 36 H 0.09 4.59 8.06 -2.91 -0.02 4.56 16 37 H 0.10 5.13 6.26 -2.91 -0.02 5.12 16 38 H 0.09 1.16 7.28 -2.38 -0.02 1.14 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.12 1.14 8.14 -2.38 -0.02 1.13 16 41 H 0.05 0.72 7.15 -2.38 -0.02 0.70 16 42 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.04 0.96 7.75 -2.39 -0.02 0.94 16 44 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 45 H 0.07 2.17 6.14 -2.39 -0.01 2.15 16 Total: -1.00 -67.95 365.44 2.93 -65.03 By element: Atomic # 1 Polarization: 44.59 SS G_CDS: -0.49 Total: 44.09 kcal Atomic # 6 Polarization: -38.40 SS G_CDS: 6.14 Total: -32.25 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -3.12 Total: -81.65 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -1.64 Total: -34.56 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.04 Total: 39.35 kcal Total: -67.95 2.93 -65.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887213927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.156 kcal (2) G-P(sol) polarization free energy of solvation -67.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds