Wall clock time and date at job start Tue Mar 31 2020 16:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46846 * 245.62451 * 3 2 1 5 5 H 1.09001 * 110.88709 * 51.12116 * 4 3 2 6 6 C 1.55151 * 111.00574 * 175.00046 * 4 3 2 7 7 C 1.54326 * 102.94587 * 153.61274 * 6 4 3 8 8 N 1.47024 * 107.26959 * 337.81312 * 7 6 4 9 9 C 1.34778 * 125.64873 * 178.90752 * 8 7 6 10 10 O 1.21589 * 119.99749 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99891 * 0.02562 * 9 8 7 12 12 C 1.46494 * 119.99630 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.46848 * 180.02562 * 12 11 9 14 14 C 1.38303 * 119.93034 * 90.00157 * 13 12 11 15 15 C 1.38099 * 120.06408 * 179.97438 * 14 13 12 16 16 C 1.38882 * 119.93445 * 359.97438 * 15 14 13 17 17 O 1.35754 * 120.06635 * 179.97438 * 16 15 14 18 18 C 1.34829 * 117.00355 * 354.46667 * 17 16 15 19 19 H 1.07998 * 119.99409 * 5.05373 * 18 17 16 20 20 C 1.38651 * 120.00088 * 185.05761 * 18 17 16 21 21 N 1.31562 * 119.99726 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00090 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47067 * 59.99946 * 22 20 18 24 24 H 1.48501 * 109.47257 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47187 * 299.99789 * 22 20 18 26 26 C 1.38874 * 119.85939 * 0.27819 * 16 15 14 27 27 C 1.38104 * 119.93052 * 359.46389 * 26 16 15 28 28 C 1.47422 * 108.70049 * 359.16277 * 8 7 6 29 29 H 4.44644 * 5.63384 * 179.97438 * 4 1 2 30 30 H 1.08991 * 109.47094 * 125.63070 * 3 2 1 31 31 H 1.08998 * 109.47474 * 5.62328 * 3 2 1 32 32 H 1.09001 * 110.72001 * 35.25300 * 6 4 3 33 33 H 1.09002 * 110.87910 * 272.04896 * 6 4 3 34 34 H 1.08999 * 109.88802 * 218.39243 * 7 6 4 35 35 H 1.09002 * 109.87774 * 97.22368 * 7 6 4 36 36 H 0.96997 * 119.99852 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.47607 * 60.00545 * 12 11 9 38 38 H 1.09000 * 109.47548 * 299.99909 * 12 11 9 39 39 H 1.07996 * 119.96532 * 0.02562 * 14 13 12 40 40 H 1.08007 * 120.03128 * 179.97438 * 15 14 13 41 41 H 0.97003 * 119.99701 * 179.97438 * 21 20 18 42 42 H 1.08004 * 120.03515 * 179.72706 * 26 16 15 43 43 H 1.08002 * 119.95922 * 180.27996 * 27 26 16 44 44 H 1.09005 * 110.36290 * 142.74533 * 28 8 7 45 45 H 1.09001 * 110.37082 * 265.06000 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.5962 1.3140 5 1 2.6827 0.1131 2.1689 6 6 4.7015 0.4999 1.4056 7 6 5.0659 1.6709 2.3424 8 7 3.9555 2.6331 2.2907 9 6 3.8808 3.7847 2.9870 10 8 2.9100 4.5066 2.8656 11 7 4.8823 4.1359 3.8178 12 6 4.8008 5.3873 4.5751 13 6 6.0379 5.5436 5.4216 14 6 7.1461 6.1943 4.9105 15 6 8.2809 6.3395 5.6839 16 6 8.3084 5.8318 6.9763 17 8 9.4227 5.9726 7.7388 18 6 10.5064 6.5122 7.1453 19 1 10.4387 6.8849 6.1340 20 6 11.7078 6.5883 7.8333 21 7 11.7900 6.1346 9.0655 22 14 13.2091 7.3365 7.0113 23 1 12.9192 8.7444 6.6385 24 1 14.3579 7.3003 7.9516 25 1 13.5435 6.5599 5.7905 26 6 7.1957 5.1744 7.4847 27 6 6.0620 5.0370 6.7082 28 6 2.9344 2.1266 1.3557 29 1 -1.0501 0.0001 -0.0002 30 1 3.0090 0.5994 -0.8352 31 1 3.0099 -1.0219 -0.1007 32 1 5.1552 0.6359 0.4239 33 1 5.0062 -0.4516 1.8413 34 1 5.9851 2.1469 2.0007 35 1 5.1921 1.3049 3.3614 36 1 5.6569 3.5601 3.9143 37 1 3.9207 5.3666 5.2177 38 1 4.7260 6.2264 3.8834 39 1 7.1237 6.5899 3.9058 40 1 9.1462 6.8473 5.2841 41 1 12.6306 6.1875 9.5467 42 1 7.2156 4.7746 8.4879 43 1 5.1949 4.5298 7.1047 44 1 1.9348 2.3560 1.7250 45 1 3.0811 2.5560 0.3646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888123763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:48 Heat of formation + Delta-G solvation = 19.707180 kcal Electronic energy + Delta-G solvation = -26102.992889 eV Core-core repulsion = 22280.587164 eV Total energy + Delta-G solvation = -3822.405726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.40281 -39.17745 -38.21238 -36.81834 -34.80225 -34.32692 -32.40766 -31.99919 -30.28782 -29.80649 -29.77152 -27.13130 -25.75646 -24.63841 -23.28330 -22.05592 -21.02439 -20.61644 -19.99945 -18.52360 -18.30156 -18.06117 -17.05129 -16.63154 -15.90137 -15.39446 -14.89567 -14.79895 -14.57099 -14.53118 -14.25038 -14.03836 -13.73356 -13.58242 -13.32533 -13.21551 -13.17466 -12.78869 -12.77920 -12.52707 -12.05773 -11.95205 -11.68227 -11.45450 -11.38121 -11.15781 -10.95480 -10.79665 -10.69708 -10.52732 -10.51086 -10.45509 -10.15880 -9.43732 -9.07312 -8.91645 -8.58609 -8.28840 -7.33792 -6.53575 -4.12601 2.00893 2.12650 2.44712 2.50754 2.72396 3.08441 3.09129 3.12177 3.22763 3.83370 3.89738 4.04748 4.19122 4.27107 4.48453 4.55162 4.84012 4.92422 4.99430 5.01176 5.15781 5.22737 5.24266 5.26631 5.36136 5.43147 5.44936 5.53560 5.62429 5.67102 5.70983 5.82319 5.83708 5.90816 6.08637 6.12568 6.35051 6.58373 6.62823 6.80170 6.92932 7.02110 7.15565 7.27589 7.28631 7.34530 7.70956 7.90977 7.99529 8.62285 8.91599 9.59777 10.63813 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.001942 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.716935 B =14411.011268 C =14955.873888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.190 4.190 3 C 0.000 4.000 4 C -0.099 4.099 5 H 0.089 0.911 6 C -0.124 4.124 7 C 0.098 3.902 8 N -0.641 5.641 9 C 0.719 3.281 10 O -0.595 6.595 11 N -0.735 5.735 12 C 0.197 3.803 13 C -0.214 4.214 14 C -0.050 4.050 15 C -0.237 4.237 16 C 0.161 3.839 17 O -0.173 6.173 18 C -0.394 4.394 19 H 0.093 0.907 20 C 0.041 3.959 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.196 4.196 27 C -0.054 4.054 28 C 0.132 3.868 29 H 0.216 0.784 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.397 0.603 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.128 0.872 41 H 0.272 0.728 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.077 0.923 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.837 -12.460 -16.259 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.190 4.190 3 C -0.037 4.037 4 C -0.118 4.118 5 H 0.108 0.892 6 C -0.162 4.162 7 C -0.026 4.026 8 N -0.380 5.380 9 C 0.421 3.579 10 O -0.473 6.473 11 N -0.390 5.390 12 C 0.075 3.925 13 C -0.215 4.215 14 C -0.069 4.069 15 C -0.257 4.257 16 C 0.106 3.894 17 O -0.076 6.076 18 C -0.470 4.470 19 H 0.110 0.890 20 C -0.164 4.164 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.215 4.215 27 C -0.072 4.072 28 C 0.009 3.991 29 H 0.233 0.767 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.231 0.769 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.126 0.874 40 H 0.146 0.854 41 H 0.082 0.918 42 H 0.136 0.864 43 H 0.130 0.870 44 H 0.095 0.905 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.293 -11.870 -15.836 24.412 hybrid contribution 1.024 0.125 -0.337 1.085 sum -13.269 -11.745 -16.173 23.991 Atomic orbital electron populations 1.24941 0.96035 1.00895 1.00359 1.23037 0.94506 1.00620 1.00841 1.18655 0.84932 1.02493 0.97588 1.22335 0.95897 0.95524 0.98043 0.89228 1.22681 0.94762 0.98358 1.00423 1.22009 0.90332 0.89906 1.00335 1.47554 1.22227 1.21246 1.46970 1.15526 0.83401 0.80196 0.78775 1.90912 1.33384 1.52861 1.70166 1.45513 1.21874 1.25487 1.46125 1.19844 0.95643 0.84463 0.92597 1.19224 0.96251 1.10052 0.95993 1.20649 0.92081 0.96083 0.98064 1.21159 0.99955 1.08843 0.95694 1.19437 0.88320 0.91819 0.89840 1.83978 1.17206 1.70031 1.36371 1.21306 0.86327 1.39386 0.99978 0.88979 1.25314 0.98283 0.97028 0.95820 1.70030 1.27071 1.42450 1.09806 0.85765 0.79463 0.79427 0.78707 1.19428 1.20208 1.19445 1.20217 0.92974 1.06943 1.01353 1.20540 0.96439 0.97183 0.93081 1.22025 0.92488 0.91792 0.92801 0.76719 0.89106 0.88853 0.90040 0.89547 0.91261 0.91372 0.76862 0.91716 0.91753 0.87388 0.85425 0.91833 0.86378 0.86958 0.90475 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.52 19.25 29.55 0.57 -0.95 16 2 C -0.19 -1.48 13.07 -37.12 -0.49 -1.96 16 3 C 0.00 0.00 5.23 -29.52 -0.15 -0.15 16 4 C -0.10 -0.64 2.96 -88.59 -0.26 -0.90 16 5 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 6 C -0.12 -0.65 6.42 -24.90 -0.16 -0.81 16 7 C 0.10 0.76 6.15 -3.06 -0.02 0.74 16 8 N -0.64 -7.21 3.33 -176.37 -0.59 -7.79 16 9 C 0.72 10.62 8.49 -86.92 -0.74 9.88 16 10 O -0.59 -11.06 16.60 5.29 0.09 -10.97 16 11 N -0.74 -9.95 5.51 -66.41 -0.37 -10.32 16 12 C 0.20 2.89 5.80 -5.19 -0.03 2.86 16 13 C -0.21 -3.47 5.25 -104.57 -0.55 -4.02 16 14 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 15 C -0.24 -4.90 9.17 -39.39 -0.36 -5.26 16 16 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 17 O -0.17 -4.79 9.76 0.04 0.00 -4.79 16 18 C -0.39 -10.66 9.49 30.88 0.29 -10.37 16 19 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -24.55 13.67 55.48 0.76 -23.79 16 22 Si 0.94 19.91 29.55 -169.99 -5.02 14.89 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 C -0.20 -3.93 9.99 -39.40 -0.39 -4.32 16 27 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 28 C 0.13 1.28 6.11 -2.65 -0.02 1.26 16 29 H 0.22 0.96 7.80 -54.09 -0.42 0.54 16 30 H 0.09 0.41 7.97 -51.93 -0.41 0.00 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.34 8.04 -51.93 -0.42 -0.07 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.40 4.81 7.45 -40.82 -0.30 4.50 16 37 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 39 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.13 2.65 5.64 -52.48 -0.30 2.35 16 41 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 43 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 44 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 45 H 0.06 0.60 7.90 -51.93 -0.41 0.19 16 LS Contribution 386.04 15.07 5.82 5.82 Total: -1.00 -33.15 386.04 -9.05 -42.21 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.31 Total: 6.85 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -3.43 Total: -12.10 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: -0.19 Total: -41.91 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.09 Total: -15.76 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.15 -9.05 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888123763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.914 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds