Wall clock time and date at job start Tue Mar 31 2020 16:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46846 * 245.62451 * 3 2 1 5 5 H 1.09001 * 110.88709 * 51.12116 * 4 3 2 6 6 C 1.55151 * 111.00574 * 175.00046 * 4 3 2 7 7 C 1.54326 * 102.94587 * 153.61274 * 6 4 3 8 8 N 1.47024 * 107.26959 * 337.81312 * 7 6 4 9 9 C 1.34778 * 125.64873 * 178.90752 * 8 7 6 10 10 O 1.21589 * 119.99749 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99891 * 0.02562 * 9 8 7 12 12 C 1.46494 * 119.99630 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.46848 * 180.02562 * 12 11 9 14 14 C 1.38303 * 119.93034 * 90.00157 * 13 12 11 15 15 C 1.38099 * 120.06408 * 179.97438 * 14 13 12 16 16 C 1.38882 * 119.93445 * 359.97438 * 15 14 13 17 17 O 1.35754 * 120.06635 * 179.97438 * 16 15 14 18 18 C 1.34829 * 117.00355 * 354.46667 * 17 16 15 19 19 H 1.07998 * 119.99409 * 5.05373 * 18 17 16 20 20 C 1.38651 * 120.00088 * 185.05761 * 18 17 16 21 21 N 1.31562 * 119.99726 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00090 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47067 * 59.99946 * 22 20 18 24 24 H 1.48501 * 109.47257 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47187 * 299.99789 * 22 20 18 26 26 C 1.38874 * 119.85939 * 0.27819 * 16 15 14 27 27 C 1.38104 * 119.93052 * 359.46389 * 26 16 15 28 28 C 1.47422 * 108.70049 * 359.16277 * 8 7 6 29 29 H 4.44644 * 5.63384 * 179.97438 * 4 1 2 30 30 H 1.08991 * 109.47094 * 125.63070 * 3 2 1 31 31 H 1.08998 * 109.47474 * 5.62328 * 3 2 1 32 32 H 1.09001 * 110.72001 * 35.25300 * 6 4 3 33 33 H 1.09002 * 110.87910 * 272.04896 * 6 4 3 34 34 H 1.08999 * 109.88802 * 218.39243 * 7 6 4 35 35 H 1.09002 * 109.87774 * 97.22368 * 7 6 4 36 36 H 0.96997 * 119.99852 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.47607 * 60.00545 * 12 11 9 38 38 H 1.09000 * 109.47548 * 299.99909 * 12 11 9 39 39 H 1.07996 * 119.96532 * 0.02562 * 14 13 12 40 40 H 1.08007 * 120.03128 * 179.97438 * 15 14 13 41 41 H 0.97003 * 119.99701 * 179.97438 * 21 20 18 42 42 H 1.08004 * 120.03515 * 179.72706 * 26 16 15 43 43 H 1.08002 * 119.95922 * 180.27996 * 27 26 16 44 44 H 1.09005 * 110.36290 * 142.74533 * 28 8 7 45 45 H 1.09001 * 110.37082 * 265.06000 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.5962 1.3140 5 1 2.6827 0.1131 2.1689 6 6 4.7015 0.4999 1.4056 7 6 5.0659 1.6709 2.3424 8 7 3.9555 2.6331 2.2907 9 6 3.8808 3.7847 2.9870 10 8 2.9100 4.5066 2.8656 11 7 4.8823 4.1359 3.8178 12 6 4.8008 5.3873 4.5751 13 6 6.0379 5.5436 5.4216 14 6 7.1461 6.1943 4.9105 15 6 8.2809 6.3395 5.6839 16 6 8.3084 5.8318 6.9763 17 8 9.4227 5.9726 7.7388 18 6 10.5064 6.5122 7.1453 19 1 10.4387 6.8849 6.1340 20 6 11.7078 6.5883 7.8333 21 7 11.7900 6.1346 9.0655 22 14 13.2091 7.3365 7.0113 23 1 12.9192 8.7444 6.6385 24 1 14.3579 7.3003 7.9516 25 1 13.5435 6.5599 5.7905 26 6 7.1957 5.1744 7.4847 27 6 6.0620 5.0370 6.7082 28 6 2.9344 2.1266 1.3557 29 1 -1.0501 0.0001 -0.0002 30 1 3.0090 0.5994 -0.8352 31 1 3.0099 -1.0219 -0.1007 32 1 5.1552 0.6359 0.4239 33 1 5.0062 -0.4516 1.8413 34 1 5.9851 2.1469 2.0007 35 1 5.1921 1.3049 3.3614 36 1 5.6569 3.5601 3.9143 37 1 3.9207 5.3666 5.2177 38 1 4.7260 6.2264 3.8834 39 1 7.1237 6.5899 3.9058 40 1 9.1462 6.8473 5.2841 41 1 12.6306 6.1875 9.5467 42 1 7.2156 4.7746 8.4879 43 1 5.1949 4.5298 7.1047 44 1 1.9348 2.3560 1.7250 45 1 3.0811 2.5560 0.3646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888123763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:47 Heat of formation + Delta-G solvation = -0.372498 kcal Electronic energy + Delta-G solvation = -26103.863609 eV Core-core repulsion = 22280.587164 eV Total energy + Delta-G solvation = -3823.276446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.40419 -40.77969 -39.17166 -38.38947 -35.71821 -35.36268 -34.26861 -32.77926 -31.84238 -31.18184 -30.37342 -28.06905 -27.39625 -25.96354 -24.10525 -23.64914 -22.19365 -21.53443 -21.03229 -19.88001 -19.28973 -19.01331 -18.77032 -17.49233 -16.98096 -16.51967 -16.43349 -16.08187 -15.99754 -15.54866 -15.37603 -15.15109 -14.99913 -14.81980 -14.44193 -14.30206 -14.15362 -13.87648 -13.80313 -13.64497 -13.37451 -13.11345 -13.01774 -12.56363 -12.51082 -12.38765 -12.23092 -12.14310 -11.99205 -11.65361 -11.40748 -11.20644 -11.04781 -10.94842 -10.79519 -10.23867 -9.82038 -9.50379 -9.02785 -8.47676 -6.16074 0.51271 0.57198 1.36484 1.45507 1.52258 1.66307 1.93065 1.97098 2.09946 2.17779 2.76859 3.04964 3.23028 3.43659 3.48118 3.63470 3.72171 3.86600 3.98619 4.02710 4.16966 4.28555 4.39940 4.45023 4.50284 4.56192 4.62436 4.71166 4.79576 4.80516 4.85047 4.89229 5.01131 5.03300 5.11970 5.14299 5.24353 5.25875 5.28172 5.37986 5.46051 5.52158 5.68504 5.74934 6.01463 6.03998 6.15083 6.76043 6.95302 6.96945 7.51193 7.75700 8.74720 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.001942 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.716935 B =14411.011268 C =14955.873888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.211 4.211 3 C 0.002 3.998 4 C -0.086 4.086 5 H 0.082 0.918 6 C -0.113 4.113 7 C 0.088 3.912 8 N -0.639 5.639 9 C 0.714 3.286 10 O -0.639 6.639 11 N -0.728 5.728 12 C 0.203 3.797 13 C -0.182 4.182 14 C -0.044 4.044 15 C -0.243 4.243 16 C 0.124 3.876 17 O -0.228 6.228 18 C -0.415 4.415 19 H 0.104 0.896 20 C -0.021 4.021 21 N -0.918 5.918 22 Si 1.017 2.983 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.256 1.256 26 C -0.204 4.204 27 C -0.043 4.043 28 C 0.127 3.873 29 H 0.234 0.766 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.406 0.594 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.138 0.862 40 H 0.122 0.878 41 H 0.273 0.727 42 H 0.116 0.884 43 H 0.146 0.854 44 H 0.050 0.950 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.450 -13.661 -19.018 27.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.211 4.211 3 C -0.034 4.034 4 C -0.105 4.105 5 H 0.101 0.899 6 C -0.150 4.150 7 C -0.034 4.034 8 N -0.377 5.377 9 C 0.415 3.585 10 O -0.521 6.521 11 N -0.383 5.383 12 C 0.080 3.920 13 C -0.183 4.183 14 C -0.063 4.063 15 C -0.262 4.262 16 C 0.073 3.927 17 O -0.134 6.134 18 C -0.491 4.491 19 H 0.121 0.879 20 C -0.219 4.219 21 N -0.556 5.556 22 Si 0.837 3.163 23 H -0.183 1.183 24 H -0.198 1.198 25 H -0.180 1.180 26 C -0.223 4.223 27 C -0.061 4.061 28 C 0.003 3.997 29 H 0.250 0.750 30 H 0.120 0.880 31 H 0.135 0.865 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.242 0.758 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.156 0.844 40 H 0.140 0.860 41 H 0.082 0.918 42 H 0.134 0.866 43 H 0.163 0.837 44 H 0.069 0.931 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.937 -13.122 -18.642 27.255 hybrid contribution 0.817 0.403 0.364 0.981 sum -14.120 -12.718 -18.279 26.367 Atomic orbital electron populations 1.25657 0.97129 1.00985 1.00251 1.23752 0.95691 1.00690 1.01006 1.18783 0.83578 1.03931 0.97155 1.22224 0.97046 0.92751 0.98527 0.89912 1.22707 0.93344 0.98124 1.00866 1.22304 0.89423 0.90120 1.01542 1.47634 1.23500 1.20551 1.46022 1.15669 0.82883 0.80848 0.79055 1.90880 1.35017 1.54600 1.71613 1.45249 1.22064 1.25160 1.45841 1.19730 0.94479 0.85242 0.92551 1.19460 0.96169 1.07080 0.95612 1.20926 0.90975 0.95400 0.98960 1.21243 1.01047 1.08760 0.95145 1.19979 0.88185 0.93464 0.91086 1.83949 1.18574 1.72683 1.38220 1.21795 0.86911 1.39676 1.00669 0.87880 1.26576 1.01453 0.97446 0.96419 1.70177 1.28022 1.45500 1.11868 0.84662 0.74938 0.78869 0.77873 1.18287 1.19763 1.18011 1.20439 0.93231 1.06755 1.01861 1.20862 0.96173 0.96247 0.92839 1.22168 0.90899 0.94263 0.92324 0.74968 0.87968 0.86544 0.88326 0.87368 0.90515 0.90923 0.75806 0.91324 0.91478 0.84397 0.86044 0.91807 0.86592 0.83671 0.93093 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.11 19.25 74.32 1.43 -1.68 16 2 C -0.21 -2.98 13.07 31.13 0.41 -2.58 16 3 C 0.00 0.02 5.23 28.79 0.15 0.17 16 4 C -0.09 -0.90 2.96 -9.48 -0.03 -0.92 16 5 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 6 C -0.11 -0.74 6.42 31.78 0.20 -0.54 16 7 C 0.09 1.11 6.15 86.73 0.53 1.64 16 8 N -0.64 -13.15 3.33 -830.18 -2.76 -15.92 16 9 C 0.71 19.85 8.49 179.05 1.52 21.37 16 10 O -0.64 -23.24 16.60 -4.00 -0.07 -23.31 16 11 N -0.73 -17.72 5.51 -482.29 -2.66 -20.38 16 12 C 0.20 5.34 5.80 85.64 0.50 5.83 16 13 C -0.18 -5.36 5.25 -19.83 -0.10 -5.47 16 14 C -0.04 -1.42 9.69 22.25 0.22 -1.21 16 15 C -0.24 -9.94 9.17 22.39 0.21 -9.74 16 16 C 0.12 5.87 6.65 22.58 0.15 6.02 16 17 O -0.23 -13.28 9.76 -22.78 -0.22 -13.51 16 18 C -0.41 -23.36 9.49 67.92 0.64 -22.72 16 19 H 0.10 5.28 5.20 -2.91 -0.02 5.27 16 20 C -0.02 -1.16 5.49 84.83 0.47 -0.69 16 21 N -0.92 -55.08 13.67 21.61 0.30 -54.78 16 22 Si 1.02 41.56 29.55 68.60 2.03 43.59 16 23 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 24 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 26 C -0.20 -8.16 9.99 22.39 0.22 -7.94 16 27 C -0.04 -1.34 9.69 22.25 0.22 -1.13 16 28 C 0.13 2.27 6.11 86.78 0.53 2.80 16 29 H 0.23 1.88 7.80 -4.41 -0.03 1.84 16 30 H 0.10 0.62 7.97 -2.39 -0.02 0.60 16 31 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 0.38 8.04 -2.39 -0.02 0.36 16 33 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.41 8.54 7.45 -92.71 -0.69 7.85 16 37 H 0.07 1.82 8.08 -2.39 -0.02 1.80 16 38 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 39 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.12 5.07 5.64 -2.91 -0.02 5.05 16 41 H 0.27 15.05 8.31 -92.71 -0.77 14.27 16 42 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 43 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 44 H 0.05 1.18 8.04 -2.38 -0.02 1.16 16 45 H 0.07 1.17 7.90 -2.39 -0.02 1.16 16 Total: -1.00 -77.17 386.04 4.19 -72.98 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.31 Total: 28.10 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 7.26 Total: -16.78 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -5.12 Total: -91.08 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -0.29 Total: -36.82 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -77.17 4.19 -72.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888123763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.611 kcal (2) G-P(sol) polarization free energy of solvation -77.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds