Wall clock time and date at job start Tue Mar 31 2020 16:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47399 * 161.44310 * 3 2 1 5 5 H 1.08998 * 110.91906 * 302.55434 * 4 3 2 6 6 C 1.55157 * 111.00910 * 178.64832 * 4 3 2 7 7 C 1.54312 * 102.86717 * 206.23042 * 6 4 3 8 8 N 1.47022 * 107.27637 * 22.52275 * 7 6 4 9 9 C 1.34776 * 125.65271 * 180.96609 * 8 7 6 10 10 O 1.21580 * 120.00258 * 179.69151 * 9 8 7 11 11 N 1.34785 * 119.99486 * 359.69822 * 9 8 7 12 12 C 1.46501 * 119.99573 * 180.27115 * 11 9 8 13 13 C 1.50695 * 109.46971 * 179.72464 * 12 11 9 14 14 C 1.38302 * 119.93155 * 269.72959 * 13 12 11 15 15 C 1.38102 * 120.07123 * 179.72208 * 14 13 12 16 16 C 1.38884 * 119.92549 * 0.57443 * 15 14 13 17 17 O 1.35749 * 120.06748 * 179.68164 * 16 15 14 18 18 C 1.34830 * 117.00251 * 174.48632 * 17 16 15 19 19 H 1.07997 * 119.99903 * 5.05438 * 18 17 16 20 20 C 1.38653 * 119.99975 * 185.05738 * 18 17 16 21 21 N 1.31556 * 120.00424 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99640 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47029 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46909 * 120.00125 * 22 20 18 25 25 H 1.48505 * 109.46831 * 239.99876 * 22 20 18 26 26 C 1.38877 * 119.86221 * 359.69817 * 16 15 14 27 27 C 1.38099 * 119.93350 * 0.02562 * 26 16 15 28 28 C 1.47430 * 108.70252 * 0.70821 * 8 7 6 29 29 H 4.44641 * 5.63327 * 179.97438 * 4 1 2 30 30 H 1.09003 * 109.47593 * 41.44166 * 3 2 1 31 31 H 1.09001 * 109.47089 * 281.44402 * 3 2 1 32 32 H 1.09002 * 110.72094 * 324.78808 * 6 4 3 33 33 H 1.09002 * 110.71688 * 87.88373 * 6 4 3 34 34 H 1.09002 * 109.98583 * 263.05163 * 7 6 4 35 35 H 1.08998 * 109.77720 * 141.88466 * 7 6 4 36 36 H 0.96998 * 120.00177 * 0.02562 * 11 9 8 37 37 H 1.08998 * 109.47332 * 299.72467 * 12 11 9 38 38 H 1.08994 * 109.46811 * 59.72469 * 12 11 9 39 39 H 1.08002 * 119.96739 * 359.97438 * 14 13 12 40 40 H 1.07997 * 120.03913 * 180.26648 * 15 14 13 41 41 H 0.96997 * 120.00145 * 180.02562 * 21 20 18 42 42 H 1.08001 * 120.02997 * 180.02562 * 26 16 15 43 43 H 1.07999 * 119.96445 * 180.02562 * 27 26 16 44 44 H 1.08998 * 110.36974 * 94.93194 * 28 8 7 45 45 H 1.08998 * 110.36751 * 217.25779 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3683 -0.4590 5 1 2.7685 1.6160 -1.4475 6 6 4.7060 1.4194 -0.4399 7 6 4.9980 2.9224 -0.2473 8 7 3.8029 3.5248 0.3613 9 6 3.6513 4.8275 0.6718 10 8 2.6125 5.2171 1.1691 11 7 4.6514 5.6984 0.4309 12 6 4.4889 7.1134 0.7740 13 6 5.7439 7.8652 0.4126 14 6 6.7592 8.0002 1.3419 15 6 7.9130 8.6837 1.0119 16 6 8.0481 9.2459 -0.2508 17 8 9.1783 9.9239 -0.5760 18 6 9.2936 10.3454 -1.8515 19 1 8.4731 10.2114 -2.5408 20 6 10.4657 10.9509 -2.2783 21 7 11.4651 11.1146 -1.4386 22 14 10.6257 11.5343 -4.0457 23 1 9.3710 11.2348 -4.7813 24 1 10.8729 12.9985 -4.0632 25 1 11.7607 10.8328 -4.6976 26 6 7.0244 9.1135 -1.1799 27 6 5.8755 8.4239 -0.8457 28 6 2.7953 2.4690 0.5699 29 1 -1.0501 -0.0004 -0.0001 30 1 3.0097 -0.7695 -0.6802 31 1 3.0094 -0.2031 1.0072 32 1 5.1009 0.8364 0.3922 33 1 5.1152 1.0648 -1.3859 34 1 5.1984 3.3895 -1.2115 35 1 5.8550 3.0498 0.4140 36 1 5.4800 5.3877 0.0338 37 1 3.6456 7.5269 0.2207 38 1 4.3034 7.2089 1.8438 39 1 6.6514 7.5672 2.3254 40 1 8.7073 8.7851 1.7366 41 1 12.2849 11.5385 -1.7370 42 1 7.1267 9.5493 -2.1627 43 1 5.0792 8.3203 -1.5679 44 1 2.8619 2.0761 1.5844 45 1 1.7948 2.8559 0.3769 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888123764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:51 Heat of formation + Delta-G solvation = 19.709391 kcal Electronic energy + Delta-G solvation = -26119.741568 eV Core-core repulsion = 22297.335938 eV Total energy + Delta-G solvation = -3822.405630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.40037 -39.17837 -38.21147 -36.81972 -34.79889 -34.32448 -32.40867 -31.99618 -30.28854 -29.80820 -29.75234 -27.13014 -25.75838 -24.63959 -23.28437 -22.05654 -21.03125 -20.61862 -19.99994 -18.48008 -18.30068 -18.06106 -17.03710 -16.68915 -15.87467 -15.37284 -15.01221 -14.73582 -14.53368 -14.51613 -14.29426 -14.01336 -13.72407 -13.52214 -13.49271 -13.18166 -13.02927 -12.87234 -12.78602 -12.51843 -12.04732 -11.96960 -11.68303 -11.44173 -11.38785 -11.17373 -10.98273 -10.77732 -10.68362 -10.51613 -10.48806 -10.45025 -10.15960 -9.43144 -9.07169 -8.92762 -8.58433 -8.28907 -7.33834 -6.54098 -4.12937 2.00819 2.12577 2.45517 2.51262 2.72283 3.07171 3.08661 3.14247 3.22967 3.82582 3.89309 4.05622 4.18936 4.28987 4.47884 4.55203 4.84006 4.92380 4.99029 5.01039 5.15590 5.22778 5.24572 5.26835 5.35704 5.43288 5.44921 5.53981 5.62652 5.67056 5.71600 5.82274 5.83581 5.90898 6.08776 6.12638 6.35067 6.58333 6.62896 6.80084 6.93111 7.02462 7.15732 7.27613 7.29223 7.34546 7.70881 7.90796 7.99697 8.62451 8.91415 9.59721 10.63493 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020918 B = 0.001966 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.254306 B =14236.264185 C =14805.279369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.190 4.190 3 C 0.000 4.000 4 C -0.099 4.099 5 H 0.090 0.910 6 C -0.124 4.124 7 C 0.098 3.902 8 N -0.641 5.641 9 C 0.719 3.281 10 O -0.595 6.595 11 N -0.735 5.735 12 C 0.197 3.803 13 C -0.214 4.214 14 C -0.054 4.054 15 C -0.195 4.195 16 C 0.161 3.839 17 O -0.174 6.174 18 C -0.393 4.393 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.237 4.237 27 C -0.050 4.050 28 C 0.133 3.867 29 H 0.216 0.784 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.397 0.603 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.271 0.729 42 H 0.128 0.872 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.602 -20.679 0.794 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.190 4.190 3 C -0.037 4.037 4 C -0.118 4.118 5 H 0.108 0.892 6 C -0.162 4.162 7 C -0.026 4.026 8 N -0.380 5.380 9 C 0.421 3.579 10 O -0.473 6.473 11 N -0.390 5.390 12 C 0.075 3.925 13 C -0.215 4.215 14 C -0.072 4.072 15 C -0.215 4.215 16 C 0.106 3.894 17 O -0.076 6.076 18 C -0.469 4.469 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.493 5.493 22 Si 0.767 3.233 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.256 4.256 27 C -0.069 4.069 28 C 0.009 3.991 29 H 0.233 0.767 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.231 0.769 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.146 0.854 43 H 0.126 0.874 44 H 0.083 0.917 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.915 -20.072 1.318 24.459 hybrid contribution 0.350 0.208 -1.155 1.225 sum -13.565 -19.864 0.163 24.054 Atomic orbital electron populations 1.24943 0.96037 1.00351 1.00841 1.23024 0.94500 1.00832 1.00684 1.18653 0.84953 0.96990 1.03060 1.22381 0.95604 0.93748 1.00095 0.89200 1.22681 0.94921 0.95173 1.03448 1.21999 0.88544 0.93662 0.98352 1.47558 1.17658 1.06083 1.66718 1.15525 0.83987 0.79276 0.79109 1.90909 1.28284 1.77212 1.50914 1.45516 1.17464 1.08572 1.67458 1.19842 0.95257 0.77520 0.99927 1.19222 0.97416 1.08794 0.96073 1.20541 0.92170 0.96710 0.97821 1.20219 0.99658 1.05548 0.96056 1.19440 0.87234 0.89595 0.93135 1.83978 1.33070 1.60278 1.30313 1.21405 1.01753 1.39199 0.84548 0.88866 1.25320 0.94310 0.96720 1.00139 1.70043 1.04466 1.39867 1.34970 0.85631 0.78860 0.78647 0.80208 1.19042 1.20057 1.20077 1.21160 0.95249 1.07765 1.01472 1.20650 0.96255 0.95136 0.94843 1.22059 0.92660 0.86237 0.98112 0.76721 0.88889 0.89124 0.90015 0.89563 0.91359 0.91276 0.76865 0.91763 0.91711 0.86948 0.86371 0.91932 0.85417 0.87395 0.91699 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.53 19.25 29.55 0.57 -0.97 16 2 C -0.19 -1.49 12.89 -37.12 -0.48 -1.96 16 3 C 0.00 0.00 5.23 -29.52 -0.15 -0.15 16 4 C -0.10 -0.64 3.04 -88.47 -0.27 -0.91 16 5 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 6 C -0.12 -0.65 6.42 -24.90 -0.16 -0.81 16 7 C 0.10 0.77 6.14 -3.07 -0.02 0.75 16 8 N -0.64 -7.23 3.33 -176.24 -0.59 -7.82 16 9 C 0.72 10.64 8.49 -86.91 -0.74 9.90 16 10 O -0.59 -11.08 16.60 5.30 0.09 -10.99 16 11 N -0.74 -9.97 5.51 -66.42 -0.37 -10.33 16 12 C 0.20 2.90 5.80 -5.20 -0.03 2.87 16 13 C -0.21 -3.46 5.25 -104.58 -0.55 -4.01 16 14 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 15 C -0.20 -3.92 9.99 -39.39 -0.39 -4.32 16 16 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 17 O -0.17 -4.80 9.76 0.05 0.00 -4.80 16 18 C -0.39 -10.64 9.49 30.89 0.29 -10.35 16 19 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -24.56 13.67 55.48 0.76 -23.80 16 22 Si 0.94 19.95 29.55 -169.99 -5.02 14.92 16 23 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 26 C -0.24 -4.90 9.17 -39.40 -0.36 -5.26 16 27 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 28 C 0.13 1.29 5.93 -2.52 -0.01 1.27 16 29 H 0.22 0.98 7.80 -54.08 -0.42 0.56 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.41 8.10 -51.93 -0.42 -0.02 16 32 H 0.08 0.34 8.04 -51.93 -0.42 -0.08 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.40 4.81 7.45 -40.82 -0.30 4.51 16 37 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 38 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 39 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 41 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.13 2.66 5.64 -52.49 -0.30 2.37 16 43 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.06 0.61 8.00 -51.93 -0.42 0.19 16 45 H 0.08 0.89 8.04 -51.93 -0.42 0.48 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -33.21 385.99 -9.06 -42.27 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.32 Total: 6.80 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -3.43 Total: -12.07 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: -0.19 Total: -41.95 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: 0.09 Total: -15.79 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.21 -9.06 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888123764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.979 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds