Wall clock time and date at job start Tue Mar 31 2020 16:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47399 * 161.44310 * 3 2 1 5 5 H 1.08998 * 110.91906 * 302.55434 * 4 3 2 6 6 C 1.55157 * 111.00910 * 178.64832 * 4 3 2 7 7 C 1.54312 * 102.86717 * 206.23042 * 6 4 3 8 8 N 1.47022 * 107.27637 * 22.52275 * 7 6 4 9 9 C 1.34776 * 125.65271 * 180.96609 * 8 7 6 10 10 O 1.21580 * 120.00258 * 179.69151 * 9 8 7 11 11 N 1.34785 * 119.99486 * 359.69822 * 9 8 7 12 12 C 1.46501 * 119.99573 * 180.27115 * 11 9 8 13 13 C 1.50695 * 109.46971 * 179.72464 * 12 11 9 14 14 C 1.38302 * 119.93155 * 269.72959 * 13 12 11 15 15 C 1.38102 * 120.07123 * 179.72208 * 14 13 12 16 16 C 1.38884 * 119.92549 * 0.57443 * 15 14 13 17 17 O 1.35749 * 120.06748 * 179.68164 * 16 15 14 18 18 C 1.34830 * 117.00251 * 174.48632 * 17 16 15 19 19 H 1.07997 * 119.99903 * 5.05438 * 18 17 16 20 20 C 1.38653 * 119.99975 * 185.05738 * 18 17 16 21 21 N 1.31556 * 120.00424 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99640 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47029 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.46909 * 120.00125 * 22 20 18 25 25 H 1.48505 * 109.46831 * 239.99876 * 22 20 18 26 26 C 1.38877 * 119.86221 * 359.69817 * 16 15 14 27 27 C 1.38099 * 119.93350 * 0.02562 * 26 16 15 28 28 C 1.47430 * 108.70252 * 0.70821 * 8 7 6 29 29 H 4.44641 * 5.63327 * 179.97438 * 4 1 2 30 30 H 1.09003 * 109.47593 * 41.44166 * 3 2 1 31 31 H 1.09001 * 109.47089 * 281.44402 * 3 2 1 32 32 H 1.09002 * 110.72094 * 324.78808 * 6 4 3 33 33 H 1.09002 * 110.71688 * 87.88373 * 6 4 3 34 34 H 1.09002 * 109.98583 * 263.05163 * 7 6 4 35 35 H 1.08998 * 109.77720 * 141.88466 * 7 6 4 36 36 H 0.96998 * 120.00177 * 0.02562 * 11 9 8 37 37 H 1.08998 * 109.47332 * 299.72467 * 12 11 9 38 38 H 1.08994 * 109.46811 * 59.72469 * 12 11 9 39 39 H 1.08002 * 119.96739 * 359.97438 * 14 13 12 40 40 H 1.07997 * 120.03913 * 180.26648 * 15 14 13 41 41 H 0.96997 * 120.00145 * 180.02562 * 21 20 18 42 42 H 1.08001 * 120.02997 * 180.02562 * 26 16 15 43 43 H 1.07999 * 119.96445 * 180.02562 * 27 26 16 44 44 H 1.08998 * 110.36974 * 94.93194 * 28 8 7 45 45 H 1.08998 * 110.36751 * 217.25779 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3683 -0.4590 5 1 2.7685 1.6160 -1.4475 6 6 4.7060 1.4194 -0.4399 7 6 4.9980 2.9224 -0.2473 8 7 3.8029 3.5248 0.3613 9 6 3.6513 4.8275 0.6718 10 8 2.6125 5.2171 1.1691 11 7 4.6514 5.6984 0.4309 12 6 4.4889 7.1134 0.7740 13 6 5.7439 7.8652 0.4126 14 6 6.7592 8.0002 1.3419 15 6 7.9130 8.6837 1.0119 16 6 8.0481 9.2459 -0.2508 17 8 9.1783 9.9239 -0.5760 18 6 9.2936 10.3454 -1.8515 19 1 8.4731 10.2114 -2.5408 20 6 10.4657 10.9509 -2.2783 21 7 11.4651 11.1146 -1.4386 22 14 10.6257 11.5343 -4.0457 23 1 9.3710 11.2348 -4.7813 24 1 10.8729 12.9985 -4.0632 25 1 11.7607 10.8328 -4.6976 26 6 7.0244 9.1135 -1.1799 27 6 5.8755 8.4239 -0.8457 28 6 2.7953 2.4690 0.5699 29 1 -1.0501 -0.0004 -0.0001 30 1 3.0097 -0.7695 -0.6802 31 1 3.0094 -0.2031 1.0072 32 1 5.1009 0.8364 0.3922 33 1 5.1152 1.0648 -1.3859 34 1 5.1984 3.3895 -1.2115 35 1 5.8550 3.0498 0.4140 36 1 5.4800 5.3877 0.0338 37 1 3.6456 7.5269 0.2207 38 1 4.3034 7.2089 1.8438 39 1 6.6514 7.5672 2.3254 40 1 8.7073 8.7851 1.7366 41 1 12.2849 11.5385 -1.7370 42 1 7.1267 9.5493 -2.1627 43 1 5.0792 8.3203 -1.5679 44 1 2.8619 2.0761 1.5844 45 1 1.7948 2.8559 0.3769 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888123764.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:50 Heat of formation + Delta-G solvation = -0.431713 kcal Electronic energy + Delta-G solvation = -26120.614952 eV Core-core repulsion = 22297.335938 eV Total energy + Delta-G solvation = -3823.279013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.40429 -40.78178 -39.17146 -38.39175 -35.72043 -35.36007 -34.27259 -32.77587 -31.84385 -31.18635 -30.35377 -28.07314 -27.40085 -25.96410 -24.10795 -23.65072 -22.19442 -21.54307 -21.03449 -19.88440 -19.29259 -18.96823 -18.77414 -17.53088 -16.96778 -16.50590 -16.40583 -16.16905 -15.96520 -15.55271 -15.41166 -15.05436 -15.01011 -14.88077 -14.44399 -14.31143 -14.09196 -13.96056 -13.77514 -13.63992 -13.36681 -13.11942 -13.04037 -12.59215 -12.52772 -12.36057 -12.23595 -12.09436 -11.97175 -11.66970 -11.40874 -11.20385 -11.04063 -10.94870 -10.81631 -10.23941 -9.82158 -9.50437 -9.02889 -8.48411 -6.16574 0.51051 0.57071 1.36283 1.42800 1.54052 1.66539 1.92809 1.97279 2.09877 2.16966 2.76575 3.04642 3.22726 3.42566 3.47770 3.63643 3.74787 3.86525 3.98084 4.02483 4.16819 4.28880 4.39702 4.44899 4.49859 4.56062 4.62108 4.71301 4.79544 4.80292 4.85105 4.89623 5.01715 5.03229 5.11811 5.14498 5.24502 5.25689 5.28195 5.37771 5.45962 5.52114 5.68381 5.74841 6.01420 6.04002 6.14933 6.76155 6.95301 6.96584 7.51138 7.75457 8.74498 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020918 B = 0.001966 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.254306 B =14236.264185 C =14805.279369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.211 4.211 3 C 0.002 3.998 4 C -0.087 4.087 5 H 0.084 0.916 6 C -0.113 4.113 7 C 0.088 3.912 8 N -0.640 5.640 9 C 0.714 3.286 10 O -0.639 6.639 11 N -0.728 5.728 12 C 0.203 3.797 13 C -0.182 4.182 14 C -0.042 4.042 15 C -0.203 4.203 16 C 0.124 3.876 17 O -0.228 6.228 18 C -0.413 4.413 19 H 0.104 0.896 20 C -0.021 4.021 21 N -0.918 5.918 22 Si 1.018 2.982 23 H -0.251 1.251 24 H -0.270 1.270 25 H -0.268 1.268 26 C -0.243 4.243 27 C -0.045 4.045 28 C 0.127 3.873 29 H 0.233 0.767 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.406 0.594 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.146 0.854 40 H 0.117 0.883 41 H 0.273 0.727 42 H 0.121 0.879 43 H 0.137 0.863 44 H 0.068 0.932 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.933 -23.150 -0.009 27.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.211 4.211 3 C -0.034 4.034 4 C -0.106 4.106 5 H 0.102 0.898 6 C -0.150 4.150 7 C -0.034 4.034 8 N -0.377 5.377 9 C 0.415 3.585 10 O -0.521 6.521 11 N -0.383 5.383 12 C 0.080 3.920 13 C -0.183 4.183 14 C -0.061 4.061 15 C -0.222 4.222 16 C 0.073 3.927 17 O -0.134 6.134 18 C -0.489 4.489 19 H 0.121 0.879 20 C -0.219 4.219 21 N -0.556 5.556 22 Si 0.837 3.163 23 H -0.174 1.174 24 H -0.195 1.195 25 H -0.193 1.193 26 C -0.262 4.262 27 C -0.063 4.063 28 C 0.004 3.996 29 H 0.250 0.750 30 H 0.134 0.866 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.242 0.758 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.164 0.836 40 H 0.135 0.865 41 H 0.082 0.918 42 H 0.139 0.861 43 H 0.155 0.845 44 H 0.086 0.914 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.272 -22.614 0.513 27.293 hybrid contribution 0.450 0.752 -0.716 1.131 sum -14.822 -21.863 -0.203 26.414 Atomic orbital electron populations 1.25652 0.97135 1.00328 1.00970 1.23749 0.95695 1.00926 1.00714 1.18788 0.83549 0.96725 1.04382 1.22277 0.96700 0.93055 0.98561 0.89793 1.22707 0.93567 0.93343 1.05412 1.22298 0.87318 0.95358 0.98400 1.47640 1.19184 1.05195 1.65708 1.15670 0.83421 0.80375 0.78996 1.90877 1.29959 1.78329 1.52953 1.45252 1.17697 1.07943 1.67424 1.19728 0.93965 0.77989 1.00321 1.19455 0.97300 1.06437 0.95104 1.20867 0.90699 0.95153 0.99351 1.20444 1.00957 1.05732 0.95101 1.19981 0.87115 0.90715 0.94883 1.83949 1.35497 1.63181 1.30811 1.21870 1.02473 1.39522 0.85025 0.87887 1.26573 0.93665 0.96714 1.04976 1.70181 1.05437 1.42417 1.37553 0.84538 0.79424 0.78083 0.74236 1.17420 1.19515 1.19324 1.21233 0.95829 1.08259 1.00876 1.20922 0.95660 0.93821 0.95916 1.22195 0.91181 0.86733 0.99490 0.75023 0.86588 0.87879 0.88303 0.87341 0.90945 0.90478 0.75803 0.91575 0.91237 0.83585 0.86537 0.91798 0.86130 0.84492 0.91414 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.17 19.25 74.32 1.43 -1.74 16 2 C -0.21 -3.00 12.89 31.13 0.40 -2.59 16 3 C 0.00 0.02 5.23 28.79 0.15 0.17 16 4 C -0.09 -0.90 3.04 -9.40 -0.03 -0.93 16 5 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 6 C -0.11 -0.74 6.42 31.78 0.20 -0.53 16 7 C 0.09 1.11 6.14 86.72 0.53 1.64 16 8 N -0.64 -13.21 3.33 -829.76 -2.76 -15.97 16 9 C 0.71 19.90 8.49 179.05 1.52 21.42 16 10 O -0.64 -23.31 16.60 -3.97 -0.07 -23.38 16 11 N -0.73 -17.75 5.51 -482.31 -2.66 -20.41 16 12 C 0.20 5.34 5.80 85.63 0.50 5.84 16 13 C -0.18 -5.36 5.25 -19.84 -0.10 -5.46 16 14 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 15 C -0.20 -8.12 9.99 22.39 0.22 -7.89 16 16 C 0.12 5.88 6.65 22.58 0.15 6.03 16 17 O -0.23 -13.28 9.76 -22.73 -0.22 -13.50 16 18 C -0.41 -23.29 9.49 67.92 0.64 -22.64 16 19 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 20 C -0.02 -1.18 5.49 84.83 0.47 -0.72 16 21 N -0.92 -55.08 13.67 21.61 0.30 -54.78 16 22 Si 1.02 41.69 29.55 68.60 2.03 43.72 16 23 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 24 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 25 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 26 C -0.24 -9.98 9.17 22.39 0.21 -9.77 16 27 C -0.04 -1.45 9.69 22.25 0.22 -1.23 16 28 C 0.13 2.30 5.93 86.86 0.51 2.82 16 29 H 0.23 1.95 7.80 -4.41 -0.03 1.91 16 30 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.10 0.60 8.10 -2.39 -0.02 0.58 16 32 H 0.10 0.37 8.04 -2.39 -0.02 0.35 16 33 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.41 8.54 7.45 -92.71 -0.69 7.85 16 37 H 0.07 1.79 8.08 -2.39 -0.02 1.77 16 38 H 0.07 1.84 8.08 -2.39 -0.02 1.82 16 39 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 40 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 41 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 42 H 0.12 5.07 5.64 -2.91 -0.02 5.06 16 43 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 44 H 0.07 1.18 8.00 -2.39 -0.02 1.16 16 45 H 0.05 1.17 8.04 -2.39 -0.02 1.16 16 Total: -1.00 -77.30 385.99 4.17 -73.13 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 0.31 Total: 27.89 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 7.24 Total: -16.70 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -5.12 Total: -91.15 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.29 Total: -36.88 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -77.30 4.17 -73.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888123764.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.697 kcal (2) G-P(sol) polarization free energy of solvation -77.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds