Wall clock time and date at job start Tue Mar 31 2020 15:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47211 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47066 * 246.45030 * 3 2 1 5 5 N 1.46499 * 109.54166 * 302.81881 * 4 3 2 6 6 C 1.34785 * 119.99594 * 302.56877 * 5 4 3 7 7 O 1.21578 * 120.00218 * 354.76750 * 6 5 4 8 8 N 1.34776 * 119.99628 * 175.04259 * 6 5 4 9 9 C 1.39955 * 120.00163 * 184.48673 * 8 6 5 10 10 C 1.39289 * 119.94385 * 322.80750 * 9 8 6 11 11 C 1.38482 * 120.43044 * 179.76193 * 10 9 8 12 12 C 1.37681 * 120.31936 * 0.51496 * 11 10 9 13 13 C 1.40737 * 119.88604 * 359.74451 * 12 11 10 14 14 C 1.41407 * 120.21681 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99589 * 31.56472 * 14 13 12 16 16 C 1.39933 * 120.00134 * 211.57143 * 14 13 12 17 17 N 1.30824 * 119.99893 * 7.64580 * 16 14 13 18 18 Si 1.86802 * 119.99528 * 187.64258 * 16 14 13 19 19 H 1.48504 * 109.46921 * 60.00277 * 18 16 14 20 20 H 1.48506 * 109.46851 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47473 * 299.99830 * 18 16 14 22 22 C 1.38229 * 119.94835 * 143.08324 * 9 8 6 23 23 C 1.53181 * 109.54246 * 62.99326 * 4 3 2 24 24 C 1.53283 * 109.06173 * 176.85432 * 23 4 3 25 25 O 1.42904 * 109.45600 * 302.44208 * 24 23 4 26 26 C 1.42903 * 114.09638 * 61.16303 * 25 24 23 27 27 C 1.53088 * 109.41651 * 298.83535 * 26 25 24 28 28 H 4.44653 * 5.63300 * 180.02562 * 4 1 2 29 29 H 1.08996 * 109.46669 * 126.45235 * 3 2 1 30 30 H 1.08998 * 109.47354 * 6.45237 * 3 2 1 31 31 H 0.96998 * 120.00279 * 122.57993 * 5 4 3 32 32 H 0.97007 * 120.00376 * 4.48666 * 8 6 5 33 33 H 1.08002 * 119.78469 * 0.02562 * 10 9 8 34 34 H 1.08004 * 119.84553 * 180.25772 * 11 10 9 35 35 H 1.08003 * 120.05812 * 179.76772 * 12 11 10 36 36 H 0.97000 * 119.99554 * 179.97438 * 17 16 14 37 37 H 1.07997 * 120.16487 * 359.96100 * 22 9 8 38 38 H 1.09006 * 109.51953 * 296.83889 * 23 4 3 39 39 H 1.08997 * 109.52245 * 57.02593 * 23 4 3 40 40 H 1.09001 * 109.45289 * 182.45105 * 24 23 4 41 41 H 1.08993 * 109.46753 * 62.44539 * 24 23 4 42 42 H 1.09008 * 109.47646 * 178.85587 * 26 25 24 43 43 H 1.09000 * 109.49063 * 58.82993 * 26 25 24 44 44 H 1.09002 * 109.52249 * 297.71204 * 27 26 25 45 45 H 1.08995 * 109.57395 * 177.54897 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1558 0.5772 1.3224 5 7 2.6131 1.9249 1.5110 6 6 2.8380 2.8776 0.5845 7 8 3.5691 2.6474 -0.3592 8 7 2.2567 4.0874 0.7072 9 6 2.4139 5.0449 -0.3013 10 6 3.6306 5.1570 -0.9700 11 6 3.7957 6.0975 -1.9730 12 6 2.7611 6.9399 -2.3130 13 6 1.5276 6.8419 -1.6424 14 6 0.4602 7.7031 -1.9863 15 1 0.3556 8.0543 -3.0022 16 6 -0.4606 8.1005 -1.0103 17 7 -0.2528 7.8001 0.2459 18 14 -1.9863 9.0599 -1.5014 19 1 -2.7948 8.2524 -2.4499 20 1 -2.7945 9.3575 -0.2916 21 1 -1.5829 10.3319 -2.1530 22 6 1.3633 5.8816 -0.6283 23 6 2.7090 -0.3217 2.4794 24 6 3.2909 0.2219 3.7892 25 8 4.7151 0.2831 3.6881 26 6 5.1899 1.1456 2.6523 27 6 4.6861 0.6398 1.2981 28 1 -1.0500 -0.0003 -0.0001 29 1 3.0090 0.6114 -0.8266 30 1 3.0099 -1.0203 -0.1155 31 1 2.0921 2.1315 2.3026 32 1 1.7293 4.2945 1.4947 33 1 4.4493 4.5033 -0.7076 34 1 4.7419 6.1735 -2.4882 35 1 2.8956 7.6744 -3.0933 36 1 -0.8909 8.0759 0.9224 37 1 0.4207 5.7980 -0.1078 38 1 1.6205 -0.3275 2.5367 39 1 3.0713 -1.3362 2.3134 40 1 3.0129 -0.4377 4.6113 41 1 2.8964 1.2207 3.9751 42 1 6.2799 1.1515 2.6555 43 1 4.8204 2.1567 2.8231 44 1 5.0883 -0.3554 1.1083 45 1 5.0104 1.3200 0.5106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888345781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:41 Heat of formation + Delta-G solvation = 0.673880 kcal Electronic energy + Delta-G solvation = -28218.347525 eV Core-core repulsion = 24395.116453 eV Total energy + Delta-G solvation = -3823.231071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.88718 -39.07544 -37.36933 -36.01222 -34.15556 -33.40399 -32.99793 -31.49371 -31.30699 -29.47667 -28.42972 -28.00645 -25.19711 -23.90855 -23.61012 -22.04474 -21.12860 -20.02087 -19.49645 -18.25999 -17.95696 -17.29086 -16.54508 -16.17064 -15.89330 -15.48285 -15.05014 -14.80507 -14.66915 -14.59273 -14.53990 -13.88323 -13.34869 -13.14294 -13.01221 -12.95199 -12.77954 -12.47299 -12.36015 -12.23983 -11.64146 -11.53057 -11.19184 -11.11045 -10.98013 -10.79828 -10.68749 -10.62877 -10.25294 -10.11700 -9.91959 -9.76271 -9.70410 -9.39897 -9.18811 -8.92966 -8.88266 -7.28219 -6.97192 -6.61045 -4.36901 2.72736 2.86266 2.92240 2.94596 3.00776 3.07544 3.11353 3.24539 3.67436 3.71337 3.97219 4.26612 4.42409 4.59578 4.61681 4.72028 4.76885 4.87644 4.96987 5.24683 5.38723 5.45812 5.50769 5.57587 5.64453 5.66570 5.78337 5.86274 5.96818 6.10793 6.14017 6.27850 6.60649 6.71163 6.72288 6.84506 7.00486 7.02134 7.10029 7.24976 7.39059 7.66652 7.71855 7.85752 7.98924 8.07173 8.29562 8.46663 8.63084 8.92751 8.94221 9.06435 10.28714 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.003206 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.549103 B = 8732.649400 C = 9224.687071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.168 4.168 3 C -0.029 4.029 4 C 0.209 3.791 5 N -0.743 5.743 6 C 0.706 3.294 7 O -0.572 6.572 8 N -0.678 5.678 9 C 0.157 3.843 10 C -0.216 4.216 11 C -0.093 4.093 12 C -0.222 4.222 13 C 0.120 3.880 14 C -0.468 4.468 15 H 0.076 0.924 16 C 0.075 3.925 17 N -0.813 5.813 18 Si 0.910 3.090 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.266 1.266 22 C -0.171 4.171 23 C -0.158 4.158 24 C 0.062 3.938 25 O -0.384 6.384 26 C 0.065 3.935 27 C -0.168 4.168 28 H 0.213 0.787 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.392 0.608 32 H 0.397 0.603 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.277 0.723 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.094 0.906 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.047 -14.702 7.918 16.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.168 4.168 3 C -0.066 4.066 4 C 0.121 3.879 5 N -0.400 5.400 6 C 0.407 3.593 7 O -0.449 6.449 8 N -0.324 5.324 9 C 0.065 3.935 10 C -0.237 4.237 11 C -0.112 4.112 12 C -0.242 4.242 13 C 0.117 3.883 14 C -0.499 4.499 15 H 0.094 0.906 16 C -0.140 4.140 17 N -0.440 5.440 18 Si 0.735 3.265 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.193 4.193 23 C -0.196 4.196 24 C -0.016 4.016 25 O -0.302 6.302 26 C -0.012 4.012 27 C -0.206 4.206 28 H 0.230 0.770 29 H 0.132 0.868 30 H 0.108 0.892 31 H 0.226 0.774 32 H 0.231 0.769 33 H 0.125 0.875 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.140 0.860 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.068 0.932 42 H 0.112 0.888 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.724 -15.015 7.406 17.151 hybrid contribution -1.798 0.886 0.417 2.047 sum 1.926 -14.129 7.823 16.264 Atomic orbital electron populations 1.24791 0.95848 1.01822 1.01280 1.22871 0.94216 0.99741 1.00006 1.19291 0.85336 1.02324 0.99676 1.19973 0.92983 0.81022 0.93876 1.45265 1.59556 1.10262 1.24893 1.15910 0.80779 0.80099 0.82513 1.90828 1.40398 1.80414 1.33274 1.42615 1.54293 1.12350 1.23139 1.17423 0.94607 0.90427 0.91060 1.20455 0.96479 1.03664 1.03066 1.20448 0.97374 0.96058 0.97296 1.21122 0.94076 1.03098 1.05905 1.17352 0.91341 0.89642 0.89995 1.19467 1.08179 1.25702 0.96521 0.90611 1.25810 0.98477 0.95288 0.94465 1.69764 1.34483 1.38833 1.00950 0.86344 0.81029 0.80367 0.78757 1.19058 1.20493 1.19114 1.21121 0.96912 0.97959 1.03282 1.22550 1.02083 1.00119 0.94816 1.22575 0.81620 1.00498 0.96859 1.87920 1.20650 1.67358 1.54312 1.22543 0.99364 0.93074 0.86191 1.22664 0.94380 1.03773 0.99820 0.77010 0.86782 0.89222 0.77418 0.76937 0.87521 0.89081 0.88886 0.91241 0.86041 0.89995 0.89323 0.88727 0.93242 0.88833 0.92946 0.90416 0.87694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.79 19.25 29.55 0.57 -2.22 16 2 C -0.17 -2.27 11.79 -37.12 -0.44 -2.70 16 3 C -0.03 -0.36 4.49 -29.51 -0.13 -0.49 16 4 C 0.21 2.33 0.34 -131.63 -0.05 2.28 16 5 N -0.74 -9.38 3.74 -52.24 -0.20 -9.57 16 6 C 0.71 12.13 7.81 -86.91 -0.68 11.46 16 7 O -0.57 -11.41 10.16 5.30 0.05 -11.36 16 8 N -0.68 -12.64 5.33 -14.27 -0.08 -12.72 16 9 C 0.16 3.64 6.25 -83.76 -0.52 3.12 16 10 C -0.22 -5.06 8.69 -39.10 -0.34 -5.40 16 11 C -0.09 -2.17 10.02 -39.69 -0.40 -2.56 16 12 C -0.22 -5.53 9.79 -38.84 -0.38 -5.91 16 13 C 0.12 3.19 5.53 -106.85 -0.59 2.60 16 14 C -0.47 -12.43 9.05 -37.74 -0.34 -12.78 16 15 H 0.08 1.94 7.86 -52.49 -0.41 1.53 16 16 C 0.07 1.87 5.29 -17.35 -0.09 1.77 16 17 N -0.81 -20.66 10.88 55.55 0.60 -20.06 16 18 Si 0.91 18.79 29.57 -169.99 -5.03 13.76 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 C -0.17 -4.35 8.55 -38.69 -0.33 -4.68 16 23 C -0.16 -1.38 4.72 -26.49 -0.12 -1.50 16 24 C 0.06 0.53 6.67 37.30 0.25 0.78 16 25 O -0.38 -4.21 10.77 -35.23 -0.38 -4.59 16 26 C 0.06 0.71 6.68 37.20 0.25 0.95 16 27 C -0.17 -1.89 4.80 -26.59 -0.13 -2.01 16 28 H 0.21 2.05 7.80 -54.09 -0.42 1.63 16 29 H 0.11 1.76 6.25 -51.93 -0.32 1.44 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.39 4.15 7.47 -40.82 -0.30 3.84 16 32 H 0.40 6.38 8.84 -40.82 -0.36 6.02 16 33 H 0.11 2.46 6.36 -52.49 -0.33 2.13 16 34 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 35 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 36 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 37 H 0.12 3.16 6.33 -52.49 -0.33 2.83 16 38 H 0.08 0.70 7.44 -51.93 -0.39 0.31 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.41 7.04 -51.93 -0.37 0.05 16 42 H 0.09 0.92 8.14 -51.92 -0.42 0.49 16 43 H 0.05 0.62 7.75 -51.93 -0.40 0.22 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.10 1.45 6.14 -51.93 -0.32 1.13 16 LS Contribution 365.86 15.07 5.51 5.51 Total: -1.00 -30.33 365.86 -9.04 -39.37 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -6.06 Total: 16.95 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -3.48 Total: -17.31 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.33 Total: -42.35 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.33 Total: -15.95 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.33 -9.04 -39.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888345781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.045 kcal (2) G-P(sol) polarization free energy of solvation -30.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds