Wall clock time and date at job start Tue Mar 31 2020 15:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47211 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47066 * 246.45030 * 3 2 1 5 5 N 1.46499 * 109.54166 * 302.81881 * 4 3 2 6 6 C 1.34785 * 119.99594 * 302.56877 * 5 4 3 7 7 O 1.21578 * 120.00218 * 354.76750 * 6 5 4 8 8 N 1.34776 * 119.99628 * 175.04259 * 6 5 4 9 9 C 1.39955 * 120.00163 * 184.48673 * 8 6 5 10 10 C 1.39289 * 119.94385 * 322.80750 * 9 8 6 11 11 C 1.38482 * 120.43044 * 179.76193 * 10 9 8 12 12 C 1.37681 * 120.31936 * 0.51496 * 11 10 9 13 13 C 1.40737 * 119.88604 * 359.74451 * 12 11 10 14 14 C 1.41407 * 120.21681 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99589 * 31.56472 * 14 13 12 16 16 C 1.39933 * 120.00134 * 211.57143 * 14 13 12 17 17 N 1.30824 * 119.99893 * 7.64580 * 16 14 13 18 18 Si 1.86802 * 119.99528 * 187.64258 * 16 14 13 19 19 H 1.48504 * 109.46921 * 60.00277 * 18 16 14 20 20 H 1.48506 * 109.46851 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47473 * 299.99830 * 18 16 14 22 22 C 1.38229 * 119.94835 * 143.08324 * 9 8 6 23 23 C 1.53181 * 109.54246 * 62.99326 * 4 3 2 24 24 C 1.53283 * 109.06173 * 176.85432 * 23 4 3 25 25 O 1.42904 * 109.45600 * 302.44208 * 24 23 4 26 26 C 1.42903 * 114.09638 * 61.16303 * 25 24 23 27 27 C 1.53088 * 109.41651 * 298.83535 * 26 25 24 28 28 H 4.44653 * 5.63300 * 180.02562 * 4 1 2 29 29 H 1.08996 * 109.46669 * 126.45235 * 3 2 1 30 30 H 1.08998 * 109.47354 * 6.45237 * 3 2 1 31 31 H 0.96998 * 120.00279 * 122.57993 * 5 4 3 32 32 H 0.97007 * 120.00376 * 4.48666 * 8 6 5 33 33 H 1.08002 * 119.78469 * 0.02562 * 10 9 8 34 34 H 1.08004 * 119.84553 * 180.25772 * 11 10 9 35 35 H 1.08003 * 120.05812 * 179.76772 * 12 11 10 36 36 H 0.97000 * 119.99554 * 179.97438 * 17 16 14 37 37 H 1.07997 * 120.16487 * 359.96100 * 22 9 8 38 38 H 1.09006 * 109.51953 * 296.83889 * 23 4 3 39 39 H 1.08997 * 109.52245 * 57.02593 * 23 4 3 40 40 H 1.09001 * 109.45289 * 182.45105 * 24 23 4 41 41 H 1.08993 * 109.46753 * 62.44539 * 24 23 4 42 42 H 1.09008 * 109.47646 * 178.85587 * 26 25 24 43 43 H 1.09000 * 109.49063 * 58.82993 * 26 25 24 44 44 H 1.09002 * 109.52249 * 297.71204 * 27 26 25 45 45 H 1.08995 * 109.57395 * 177.54897 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1558 0.5772 1.3224 5 7 2.6131 1.9249 1.5110 6 6 2.8380 2.8776 0.5845 7 8 3.5691 2.6474 -0.3592 8 7 2.2567 4.0874 0.7072 9 6 2.4139 5.0449 -0.3013 10 6 3.6306 5.1570 -0.9700 11 6 3.7957 6.0975 -1.9730 12 6 2.7611 6.9399 -2.3130 13 6 1.5276 6.8419 -1.6424 14 6 0.4602 7.7031 -1.9863 15 1 0.3556 8.0543 -3.0022 16 6 -0.4606 8.1005 -1.0103 17 7 -0.2528 7.8001 0.2459 18 14 -1.9863 9.0599 -1.5014 19 1 -2.7948 8.2524 -2.4499 20 1 -2.7945 9.3575 -0.2916 21 1 -1.5829 10.3319 -2.1530 22 6 1.3633 5.8816 -0.6283 23 6 2.7090 -0.3217 2.4794 24 6 3.2909 0.2219 3.7892 25 8 4.7151 0.2831 3.6881 26 6 5.1899 1.1456 2.6523 27 6 4.6861 0.6398 1.2981 28 1 -1.0500 -0.0003 -0.0001 29 1 3.0090 0.6114 -0.8266 30 1 3.0099 -1.0203 -0.1155 31 1 2.0921 2.1315 2.3026 32 1 1.7293 4.2945 1.4947 33 1 4.4493 4.5033 -0.7076 34 1 4.7419 6.1735 -2.4882 35 1 2.8956 7.6744 -3.0933 36 1 -0.8909 8.0759 0.9224 37 1 0.4207 5.7980 -0.1078 38 1 1.6205 -0.3275 2.5367 39 1 3.0713 -1.3362 2.3134 40 1 3.0129 -0.4377 4.6113 41 1 2.8964 1.2207 3.9751 42 1 6.2799 1.1515 2.6555 43 1 4.8204 2.1567 2.8231 44 1 5.0883 -0.3554 1.1083 45 1 5.0104 1.3200 0.5106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888345781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:40 Heat of formation + Delta-G solvation = -16.966943 kcal Electronic energy + Delta-G solvation = -28219.112488 eV Core-core repulsion = 24395.116453 eV Total energy + Delta-G solvation = -3823.996035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.03350 -40.35842 -38.95880 -37.13058 -35.81628 -35.10439 -34.15513 -32.64103 -32.09478 -31.38903 -29.80203 -29.28306 -27.12960 -24.72642 -24.56880 -23.42019 -22.97901 -21.65179 -20.56497 -19.62645 -19.19128 -18.83316 -17.73835 -17.25534 -16.98141 -16.73190 -16.51337 -16.33973 -16.16420 -15.80555 -15.58278 -15.19713 -14.85608 -14.58916 -14.27510 -14.11969 -13.95470 -13.82811 -13.50069 -13.42909 -13.15449 -12.95579 -12.79897 -12.61853 -12.36415 -12.29181 -11.88755 -11.79637 -11.56702 -11.55612 -11.26572 -11.09028 -11.07590 -10.89963 -10.65119 -10.50247 -10.00638 -9.22667 -8.79475 -8.46594 -6.36032 0.92674 1.08588 1.40283 1.50784 1.53803 1.66683 1.87776 1.94959 2.22381 2.25251 2.82598 2.94487 3.23625 3.37791 3.65812 3.72130 3.79112 3.91573 4.02863 4.25431 4.39593 4.46421 4.54891 4.66185 4.70126 4.77076 4.78454 4.82852 4.87271 4.94401 5.02664 5.06365 5.11399 5.17615 5.19970 5.22169 5.24365 5.38691 5.58640 5.78486 5.85275 6.02219 6.12625 6.18300 6.23663 6.41990 6.71002 6.72562 6.97674 6.99594 7.10459 7.62704 8.42438 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.003206 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.549103 B = 8732.649400 C = 9224.687071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.197 4.197 3 C -0.028 4.028 4 C 0.206 3.794 5 N -0.723 5.723 6 C 0.706 3.294 7 O -0.599 6.599 8 N -0.678 5.678 9 C 0.166 3.834 10 C -0.225 4.225 11 C -0.091 4.091 12 C -0.242 4.242 13 C 0.091 3.909 14 C -0.505 4.505 15 H 0.073 0.927 16 C 0.036 3.964 17 N -0.835 5.835 18 Si 0.982 3.018 19 H -0.263 1.263 20 H -0.267 1.267 21 H -0.263 1.263 22 C -0.191 4.191 23 C -0.147 4.147 24 C 0.056 3.944 25 O -0.393 6.393 26 C 0.069 3.931 27 C -0.163 4.163 28 H 0.237 0.763 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.404 0.596 32 H 0.408 0.592 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.285 0.715 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.052 0.948 42 H 0.102 0.898 43 H 0.039 0.961 44 H 0.095 0.905 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.260 -15.910 9.194 18.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.197 4.197 3 C -0.065 4.065 4 C 0.120 3.880 5 N -0.380 5.380 6 C 0.407 3.593 7 O -0.478 6.478 8 N -0.325 5.325 9 C 0.072 3.928 10 C -0.246 4.246 11 C -0.109 4.109 12 C -0.262 4.262 13 C 0.089 3.911 14 C -0.535 4.535 15 H 0.091 0.909 16 C -0.177 4.177 17 N -0.463 5.463 18 Si 0.803 3.197 19 H -0.188 1.188 20 H -0.191 1.191 21 H -0.187 1.187 22 C -0.213 4.213 23 C -0.184 4.184 24 C -0.020 4.020 25 O -0.311 6.311 26 C -0.008 4.008 27 C -0.202 4.202 28 H 0.253 0.747 29 H 0.098 0.902 30 H 0.132 0.868 31 H 0.240 0.760 32 H 0.244 0.756 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.136 0.864 41 H 0.070 0.930 42 H 0.120 0.880 43 H 0.057 0.943 44 H 0.113 0.887 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.941 -16.267 8.732 18.695 hybrid contribution -1.502 1.157 0.053 1.897 sum 1.439 -15.110 8.786 17.537 Atomic orbital electron populations 1.25505 0.96713 1.00989 1.00309 1.23244 0.94884 1.00597 1.00935 1.19266 0.85112 1.03145 0.98976 1.20180 0.92957 0.80241 0.94640 1.45142 1.58800 1.09997 1.24061 1.16006 0.80307 0.80114 0.82910 1.90820 1.41497 1.80798 1.34670 1.42500 1.54895 1.12371 1.22708 1.17433 0.93793 0.90314 0.91219 1.20639 0.96719 1.03841 1.03399 1.20761 0.98102 0.95111 0.96948 1.21287 0.94219 1.04149 1.06576 1.17739 0.92239 0.90256 0.90890 1.19730 1.09686 1.27067 0.97030 0.90869 1.26627 1.01019 0.95924 0.94158 1.69820 1.35509 1.39127 1.01797 0.85259 0.76932 0.78763 0.78741 1.18780 1.19140 1.18702 1.21037 0.97181 0.99106 1.04013 1.22501 1.02496 0.99985 0.93461 1.22781 0.80473 1.01295 0.97470 1.87917 1.22027 1.67143 1.54059 1.22477 0.99935 0.92389 0.85989 1.22588 0.94410 1.04031 0.99157 0.74689 0.90163 0.86782 0.75963 0.75586 0.87117 0.86284 0.88176 0.90437 0.87193 0.89289 0.87888 0.86426 0.93015 0.87985 0.94297 0.88672 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -5.17 19.25 74.32 1.43 -3.74 16 2 C -0.20 -5.06 11.79 31.13 0.37 -4.69 16 3 C -0.03 -0.66 4.49 28.79 0.13 -0.53 16 4 C 0.21 4.31 0.34 3.72 0.00 4.31 16 5 N -0.72 -17.62 3.74 -437.45 -1.64 -19.25 16 6 C 0.71 24.27 7.81 179.05 1.40 25.67 16 7 O -0.60 -24.28 10.16 -3.96 -0.04 -24.32 16 8 N -0.68 -25.43 5.33 -317.33 -1.69 -27.12 16 9 C 0.17 7.85 6.25 38.09 0.24 8.09 16 10 C -0.22 -10.66 8.69 22.58 0.20 -10.47 16 11 C -0.09 -4.24 10.02 22.20 0.22 -4.02 16 12 C -0.24 -12.34 9.79 22.75 0.22 -12.12 16 13 C 0.09 5.03 5.53 -21.31 -0.12 4.91 16 14 C -0.50 -27.53 9.05 23.46 0.21 -27.32 16 15 H 0.07 3.87 7.86 -2.91 -0.02 3.84 16 16 C 0.04 1.80 5.29 85.25 0.45 2.25 16 17 N -0.84 -42.86 10.88 21.82 0.24 -42.62 16 18 Si 0.98 38.36 29.57 68.60 2.03 40.39 16 19 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 21 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 22 C -0.19 -10.03 8.55 22.85 0.20 -9.83 16 23 C -0.15 -2.15 4.72 30.75 0.15 -2.01 16 24 C 0.06 0.81 6.67 72.08 0.48 1.30 16 25 O -0.39 -7.70 10.77 -148.98 -1.60 -9.31 16 26 C 0.07 1.41 6.68 72.01 0.48 1.89 16 27 C -0.16 -3.51 4.80 30.68 0.15 -3.37 16 28 H 0.24 4.03 7.80 -4.42 -0.03 3.99 16 29 H 0.08 2.53 6.25 -2.39 -0.01 2.51 16 30 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.40 7.94 7.47 -92.71 -0.69 7.25 16 32 H 0.41 13.13 8.84 -92.70 -0.82 12.31 16 33 H 0.11 5.14 6.36 -2.91 -0.02 5.13 16 34 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 35 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 36 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 37 H 0.11 5.92 6.33 -2.91 -0.02 5.90 16 38 H 0.09 1.24 7.44 -2.38 -0.02 1.22 16 39 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.05 0.73 7.04 -2.39 -0.02 0.71 16 42 H 0.10 1.88 8.14 -2.38 -0.02 1.87 16 43 H 0.04 0.89 7.75 -2.39 -0.02 0.87 16 44 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.08 2.14 6.14 -2.39 -0.01 2.13 16 Total: -1.00 -66.77 365.86 3.01 -63.76 By element: Atomic # 1 Polarization: 48.63 SS G_CDS: -0.48 Total: 48.15 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 6.20 Total: -29.68 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -3.09 Total: -88.99 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -1.64 Total: -33.63 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -66.77 3.01 -63.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888345781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.789 kcal (2) G-P(sol) polarization free energy of solvation -66.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds