Wall clock time and date at job start Tue Mar 31 2020 15:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47229 * 2 1 4 4 C 1.50704 * 109.47265 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.94578 * 89.99431 * 4 3 2 6 6 C 1.38145 * 120.05761 * 179.97438 * 5 4 3 7 7 C 1.38732 * 119.94308 * 0.02707 * 6 5 4 8 8 O 1.35919 * 120.05716 * 179.97438 * 7 6 5 9 9 C 1.34767 * 116.99945 * 77.06426 * 8 7 6 10 10 O 1.21533 * 120.00375 * 355.09493 * 9 8 7 11 11 C 1.47286 * 120.00121 * 175.09232 * 9 8 7 12 12 C 1.41341 * 126.42511 * 359.96081 * 11 9 8 13 13 N 1.30427 * 108.01768 * 180.02562 * 12 11 9 14 14 N 1.39931 * 108.91562 * 0.02562 * 13 12 11 15 15 C 1.46501 * 125.74183 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.46844 * 269.95034 * 15 14 13 17 17 H 1.07998 * 119.99867 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00016 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99715 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00194 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47073 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47065 * 120.00293 * 20 18 16 23 23 H 1.48503 * 109.47195 * 240.00141 * 20 18 16 24 24 C 1.34234 * 108.51467 * 359.97438 * 14 13 12 25 25 C 1.50695 * 126.29591 * 180.26362 * 24 14 13 26 26 C 1.38736 * 119.88709 * 0.25172 * 7 6 5 27 27 C 1.38147 * 119.94469 * 359.45093 * 26 7 6 28 28 H 1.08993 * 109.46843 * 300.00312 * 1 2 3 29 29 H 1.09001 * 109.47031 * 60.00122 * 1 2 3 30 30 H 1.08994 * 109.47489 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47112 * 239.99489 * 2 1 3 32 32 H 1.08998 * 109.46809 * 120.00619 * 2 1 3 33 33 H 1.09002 * 109.47432 * 60.00245 * 3 2 1 34 34 H 1.09004 * 109.47473 * 299.99703 * 3 2 1 35 35 H 1.08001 * 119.97403 * 0.02562 * 5 4 3 36 36 H 1.08006 * 120.02754 * 180.02562 * 6 5 4 37 37 H 1.08003 * 125.99344 * 0.04051 * 12 11 9 38 38 H 1.08996 * 109.47541 * 29.95067 * 15 14 13 39 39 H 1.09002 * 109.47263 * 149.95795 * 15 14 13 40 40 H 0.97006 * 119.99631 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.47773 * 269.71613 * 25 24 14 42 42 H 1.09007 * 109.47406 * 29.71773 * 25 24 14 43 43 H 1.09004 * 109.46935 * 149.71107 * 25 24 14 44 44 H 1.08002 * 120.02499 * 179.72213 * 26 7 6 45 45 H 1.08001 * 119.97164 * 180.29979 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2367 1.4425 -1.1990 6 6 5.6182 1.4430 -1.2022 7 6 6.3135 1.4429 -0.0017 8 8 7.6727 1.4429 -0.0023 9 6 8.2844 2.6133 -0.2712 10 8 7.6258 3.5849 -0.5864 11 6 9.7511 2.7150 -0.1832 12 6 10.6446 1.6780 0.1691 13 7 11.8560 2.1601 0.1342 14 7 11.7972 3.5083 -0.2358 15 6 12.9459 4.4047 -0.3884 16 6 13.2315 5.0835 0.9264 17 1 12.6189 4.8684 1.7895 18 6 14.2755 5.9784 1.0278 19 7 15.0217 6.2399 -0.0231 20 14 14.6300 6.8193 2.6577 21 1 13.6536 6.3563 3.6762 22 1 16.0059 6.4794 3.1011 23 1 14.5127 8.2904 2.4916 24 6 10.5113 3.8418 -0.4284 25 6 9.9930 5.1950 -0.8421 26 6 5.6191 1.4370 1.1993 27 6 4.2376 1.4427 1.1972 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.6950 1.4429 -2.1333 36 1 6.1564 1.4435 -2.1386 37 1 10.3720 0.6641 0.4225 38 1 13.8181 3.8283 -0.6968 39 1 12.7217 5.1571 -1.1445 40 1 15.7560 6.8698 0.0481 41 1 9.7859 5.7919 0.0461 42 1 10.7418 5.6998 -1.4526 43 1 9.0765 5.0721 -1.4192 44 1 6.1582 1.4324 2.1352 45 1 3.6967 1.4430 2.1320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889427912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:00 Heat of formation + Delta-G solvation = -2.432545 kcal Electronic energy + Delta-G solvation = -26393.534329 eV Core-core repulsion = 22570.168553 eV Total energy + Delta-G solvation = -3823.365776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.21909 -40.51343 -38.89743 -36.61263 -34.98669 -33.96463 -32.20799 -31.39231 -31.17534 -30.72656 -27.89782 -26.86553 -26.32423 -23.91005 -23.10261 -22.95885 -22.06832 -21.12942 -20.28190 -19.01404 -17.94317 -17.08255 -16.83304 -16.56372 -15.91991 -15.38114 -15.23260 -14.70489 -14.67635 -14.49426 -14.03986 -13.95073 -13.84045 -13.60841 -13.37375 -12.84992 -12.75225 -12.55111 -12.45657 -12.36647 -12.19539 -11.88474 -11.76894 -11.59152 -11.53191 -11.19703 -11.15678 -11.01502 -10.94745 -10.64622 -10.51752 -10.37016 -9.97319 -9.91831 -9.12622 -8.75901 -8.70273 -8.63498 -8.14104 -6.38407 -4.46500 0.96440 1.21382 1.81995 2.64182 2.82869 3.14374 3.22565 3.25752 3.35193 3.55661 3.71866 4.20693 4.44855 4.53697 4.72645 4.77384 4.78749 4.95665 5.03874 5.09271 5.10127 5.13277 5.19680 5.33684 5.41985 5.44580 5.48436 5.53996 5.65273 5.72997 5.76650 5.85624 5.93854 5.97162 5.99822 6.11121 6.26997 6.32236 6.36962 6.40077 6.59580 6.70863 6.83733 6.91600 7.07597 7.48492 7.66898 7.71191 8.15695 8.29817 8.58987 9.20859 10.69885 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028322 B = 0.002068 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.380694 B =13536.634373 C =13767.770631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.080 4.080 4 C -0.086 4.086 5 C -0.104 4.104 6 C -0.116 4.116 7 C 0.092 3.908 8 O -0.296 6.296 9 C 0.549 3.451 10 O -0.512 6.512 11 C -0.318 4.318 12 C 0.081 3.919 13 N -0.295 5.295 14 N -0.309 5.309 15 C 0.249 3.751 16 C -0.542 4.542 17 H 0.067 0.933 18 C 0.068 3.932 19 N -0.888 5.888 20 Si 0.909 3.091 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.175 3.825 25 C -0.097 4.097 26 C -0.117 4.117 27 C -0.105 4.105 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.186 0.814 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.269 0.731 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.131 0.869 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.670 -9.727 -1.457 25.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.117 4.117 4 C -0.086 4.086 5 C -0.122 4.122 6 C -0.135 4.135 7 C 0.051 3.949 8 O -0.212 6.212 9 C 0.397 3.603 10 O -0.400 6.400 11 C -0.332 4.332 12 C -0.106 4.106 13 N -0.114 5.114 14 N -0.085 5.085 15 C 0.133 3.867 16 C -0.580 4.580 17 H 0.085 0.915 18 C -0.136 4.136 19 N -0.526 5.526 20 Si 0.735 3.265 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.205 1.205 24 C 0.037 3.963 25 C -0.155 4.155 26 C -0.136 4.136 27 C -0.123 4.123 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.203 0.797 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.111 0.889 44 H 0.149 0.851 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -22.274 -9.498 -1.482 24.260 hybrid contribution -0.421 0.601 0.743 1.044 sum -22.695 -8.897 -0.739 24.387 Atomic orbital electron populations 1.21790 0.95688 1.01709 1.01864 1.21522 0.95630 0.96043 1.02524 1.20633 0.90604 0.97424 1.03062 1.19933 0.95831 0.99780 0.93099 1.20862 0.93179 1.00369 0.97818 1.21329 0.94708 0.99854 0.97575 1.18511 0.81091 1.01884 0.93450 1.84651 1.17875 1.35991 1.82660 1.20395 0.87577 0.79535 0.72769 1.90794 1.66470 1.37073 1.45653 1.18729 0.89387 0.96065 1.28991 1.23949 0.89450 0.99372 0.97847 1.77232 1.21419 0.91253 1.21484 1.49453 1.06396 1.07886 1.44774 1.19937 0.80836 0.86802 0.99159 1.21277 1.16032 1.25248 0.95435 0.91522 1.24924 0.95057 0.96060 0.97581 1.69923 1.18809 1.34578 1.29271 0.86256 0.78487 0.79047 0.82672 1.19501 1.20510 1.20519 1.21444 0.85100 0.95988 0.93766 1.20635 1.01954 0.89999 1.02885 1.21199 0.94453 1.00525 0.97378 1.20864 0.93079 1.00518 0.97847 0.92686 0.92695 0.92683 0.91785 0.91773 0.90903 0.90917 0.85574 0.85455 0.79690 0.92217 0.92377 0.92098 0.89416 0.90331 0.88883 0.85098 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.74 5.92 -26.74 -0.16 -0.90 16 3 C -0.08 -0.56 5.34 -27.89 -0.15 -0.70 16 4 C -0.09 -0.82 5.13 -104.60 -0.54 -1.36 16 5 C -0.10 -1.08 9.69 -39.61 -0.38 -1.46 16 6 C -0.12 -1.46 9.58 -39.43 -0.38 -1.84 16 7 C 0.09 1.30 5.14 -39.21 -0.20 1.10 16 8 O -0.30 -4.65 9.87 -24.93 -0.25 -4.89 16 9 C 0.55 9.68 7.83 34.41 0.27 9.95 16 10 O -0.51 -9.69 14.38 -19.29 -0.28 -9.97 16 11 C -0.32 -5.97 6.13 -105.08 -0.64 -6.62 16 12 C 0.08 1.48 11.87 -16.97 -0.20 1.28 16 13 N -0.29 -6.34 12.50 30.87 0.39 -5.96 16 14 N -0.31 -6.89 3.56 -57.76 -0.21 -7.10 16 15 C 0.25 6.08 5.97 -5.19 -0.03 6.05 16 16 C -0.54 -14.36 9.39 -34.44 -0.32 -14.69 16 17 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -24.20 13.29 55.43 0.74 -23.47 16 20 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 C 0.18 3.51 7.01 -81.59 -0.57 2.94 16 25 C -0.10 -1.68 9.56 36.00 0.34 -1.34 16 26 C -0.12 -1.43 9.99 -39.43 -0.39 -1.82 16 27 C -0.11 -1.06 9.69 -39.60 -0.38 -1.44 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 37 H 0.19 2.63 8.06 -52.48 -0.42 2.21 16 38 H 0.06 1.55 8.14 -51.93 -0.42 1.12 16 39 H 0.06 1.39 7.01 -51.93 -0.36 1.03 16 40 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 41 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 42 H 0.08 1.32 7.04 -51.92 -0.37 0.95 16 43 H 0.09 1.53 6.52 -51.93 -0.34 1.19 16 44 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 45 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 388.21 15.07 5.85 5.85 Total: -1.00 -29.79 388.21 -8.78 -38.56 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.53 Total: 1.01 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -3.47 Total: -9.59 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.92 Total: -36.52 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.52 Total: -14.86 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.79 -8.78 -38.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889427912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.130 kcal (2) G-P(sol) polarization free energy of solvation -29.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds