Wall clock time and date at job start Tue Mar 31 2020 15:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47229 * 2 1 4 4 C 1.50704 * 109.47265 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.94578 * 89.99431 * 4 3 2 6 6 C 1.38145 * 120.05761 * 179.97438 * 5 4 3 7 7 C 1.38732 * 119.94308 * 0.02707 * 6 5 4 8 8 O 1.35919 * 120.05716 * 179.97438 * 7 6 5 9 9 C 1.34767 * 116.99945 * 77.06426 * 8 7 6 10 10 O 1.21533 * 120.00375 * 355.09493 * 9 8 7 11 11 C 1.47286 * 120.00121 * 175.09232 * 9 8 7 12 12 C 1.41341 * 126.42511 * 359.96081 * 11 9 8 13 13 N 1.30427 * 108.01768 * 180.02562 * 12 11 9 14 14 N 1.39931 * 108.91562 * 0.02562 * 13 12 11 15 15 C 1.46501 * 125.74183 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.46844 * 269.95034 * 15 14 13 17 17 H 1.07998 * 119.99867 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00016 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99715 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00194 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47073 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47065 * 120.00293 * 20 18 16 23 23 H 1.48503 * 109.47195 * 240.00141 * 20 18 16 24 24 C 1.34234 * 108.51467 * 359.97438 * 14 13 12 25 25 C 1.50695 * 126.29591 * 180.26362 * 24 14 13 26 26 C 1.38736 * 119.88709 * 0.25172 * 7 6 5 27 27 C 1.38147 * 119.94469 * 359.45093 * 26 7 6 28 28 H 1.08993 * 109.46843 * 300.00312 * 1 2 3 29 29 H 1.09001 * 109.47031 * 60.00122 * 1 2 3 30 30 H 1.08994 * 109.47489 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47112 * 239.99489 * 2 1 3 32 32 H 1.08998 * 109.46809 * 120.00619 * 2 1 3 33 33 H 1.09002 * 109.47432 * 60.00245 * 3 2 1 34 34 H 1.09004 * 109.47473 * 299.99703 * 3 2 1 35 35 H 1.08001 * 119.97403 * 0.02562 * 5 4 3 36 36 H 1.08006 * 120.02754 * 180.02562 * 6 5 4 37 37 H 1.08003 * 125.99344 * 0.04051 * 12 11 9 38 38 H 1.08996 * 109.47541 * 29.95067 * 15 14 13 39 39 H 1.09002 * 109.47263 * 149.95795 * 15 14 13 40 40 H 0.97006 * 119.99631 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.47773 * 269.71613 * 25 24 14 42 42 H 1.09007 * 109.47406 * 29.71773 * 25 24 14 43 43 H 1.09004 * 109.46935 * 149.71107 * 25 24 14 44 44 H 1.08002 * 120.02499 * 179.72213 * 26 7 6 45 45 H 1.08001 * 119.97164 * 180.29979 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2367 1.4425 -1.1990 6 6 5.6182 1.4430 -1.2022 7 6 6.3135 1.4429 -0.0017 8 8 7.6727 1.4429 -0.0023 9 6 8.2844 2.6133 -0.2712 10 8 7.6258 3.5849 -0.5864 11 6 9.7511 2.7150 -0.1832 12 6 10.6446 1.6780 0.1691 13 7 11.8560 2.1601 0.1342 14 7 11.7972 3.5083 -0.2358 15 6 12.9459 4.4047 -0.3884 16 6 13.2315 5.0835 0.9264 17 1 12.6189 4.8684 1.7895 18 6 14.2755 5.9784 1.0278 19 7 15.0217 6.2399 -0.0231 20 14 14.6300 6.8193 2.6577 21 1 13.6536 6.3563 3.6762 22 1 16.0059 6.4794 3.1011 23 1 14.5127 8.2904 2.4916 24 6 10.5113 3.8418 -0.4284 25 6 9.9930 5.1950 -0.8421 26 6 5.6191 1.4370 1.1993 27 6 4.2376 1.4427 1.1972 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.6950 1.4429 -2.1333 36 1 6.1564 1.4435 -2.1386 37 1 10.3720 0.6641 0.4225 38 1 13.8181 3.8283 -0.6968 39 1 12.7217 5.1571 -1.1445 40 1 15.7560 6.8698 0.0481 41 1 9.7859 5.7919 0.0461 42 1 10.7418 5.6998 -1.4526 43 1 9.0765 5.0721 -1.4192 44 1 6.1582 1.4324 2.1352 45 1 3.6967 1.4430 2.1320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889427912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:59 Heat of formation + Delta-G solvation = -15.317023 kcal Electronic energy + Delta-G solvation = -26394.093042 eV Core-core repulsion = 22570.168553 eV Total energy + Delta-G solvation = -3823.924489 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.61819 -41.83435 -39.86496 -37.85389 -35.87294 -35.61135 -33.94523 -32.93903 -32.02718 -31.55108 -29.51629 -28.45547 -27.16070 -25.56395 -24.41403 -23.89174 -22.97796 -22.10271 -21.40546 -20.58529 -19.21801 -18.85575 -18.40317 -17.63002 -16.98104 -16.72009 -16.46901 -16.16478 -15.83992 -15.69972 -15.15424 -15.13552 -14.72475 -14.50484 -14.42192 -14.35632 -14.18728 -13.76820 -13.64810 -13.51151 -13.25301 -13.18299 -13.09411 -13.01342 -12.72485 -12.58739 -12.35735 -12.06919 -11.92050 -11.86275 -11.83674 -11.69031 -11.44210 -11.41084 -10.77480 -10.37398 -9.98602 -9.74043 -9.52194 -8.39882 -6.55921 0.02376 0.34019 0.35923 1.11675 1.36022 1.37916 1.43349 1.52452 1.91952 2.13795 2.31619 2.76270 2.93129 3.60933 3.66669 3.81234 3.83154 3.85608 3.97113 4.10770 4.20171 4.27519 4.38188 4.40849 4.48082 4.54283 4.58024 4.68427 4.77599 4.79281 4.88539 4.94088 5.01737 5.02997 5.05685 5.07851 5.20758 5.29936 5.33092 5.35921 5.46087 5.47750 5.51384 5.54765 5.63925 5.71690 5.90945 5.96462 6.52042 6.68046 6.88950 7.15392 8.68454 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028322 B = 0.002068 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.380694 B =13536.634373 C =13767.770631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.077 4.077 4 C -0.079 4.079 5 C -0.106 4.106 6 C -0.129 4.129 7 C 0.052 3.948 8 O -0.291 6.291 9 C 0.555 3.445 10 O -0.527 6.527 11 C -0.321 4.321 12 C 0.098 3.902 13 N -0.331 5.331 14 N -0.331 5.331 15 C 0.265 3.735 16 C -0.557 4.557 17 H 0.053 0.947 18 C 0.026 3.974 19 N -0.915 5.915 20 Si 0.971 3.029 21 H -0.273 1.273 22 H -0.274 1.274 23 H -0.268 1.268 24 C 0.165 3.835 25 C -0.091 4.091 26 C -0.127 4.127 27 C -0.105 4.105 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.150 0.850 36 H 0.125 0.875 37 H 0.224 0.776 38 H 0.036 0.964 39 H 0.057 0.943 40 H 0.275 0.725 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.136 0.864 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.223 -9.952 -0.611 28.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.115 4.115 4 C -0.079 4.079 5 C -0.124 4.124 6 C -0.148 4.148 7 C 0.012 3.988 8 O -0.207 6.207 9 C 0.403 3.597 10 O -0.417 6.417 11 C -0.334 4.334 12 C -0.089 4.089 13 N -0.150 5.150 14 N -0.107 5.107 15 C 0.146 3.854 16 C -0.595 4.595 17 H 0.071 0.929 18 C -0.176 4.176 19 N -0.553 5.553 20 Si 0.795 3.205 21 H -0.198 1.198 22 H -0.199 1.199 23 H -0.193 1.193 24 C 0.028 3.972 25 C -0.149 4.149 26 C -0.145 4.145 27 C -0.123 4.123 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.167 0.833 36 H 0.143 0.857 37 H 0.240 0.760 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.121 0.879 44 H 0.154 0.846 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -24.847 -9.743 -0.643 26.696 hybrid contribution 0.176 0.564 0.457 0.747 sum -24.670 -9.179 -0.186 26.323 Atomic orbital electron populations 1.21776 0.94794 1.02063 1.02273 1.21496 0.96364 0.95374 1.02277 1.20695 0.88500 0.98142 1.04125 1.20314 0.97382 0.97643 0.92591 1.21170 0.92374 0.99542 0.99339 1.21460 0.95839 1.00396 0.97074 1.18870 0.80235 1.04887 0.94853 1.84631 1.19285 1.34598 1.82149 1.20177 0.87055 0.80027 0.72413 1.90771 1.66739 1.37833 1.46317 1.18921 0.90302 0.95809 1.28406 1.24558 0.88188 1.00625 0.95544 1.77187 1.23299 0.91196 1.23340 1.49212 1.06526 1.08219 1.46770 1.19500 0.81013 0.86576 0.98267 1.21412 1.16335 1.25953 0.95805 0.92916 1.25701 0.94655 0.96443 1.00791 1.69998 1.19209 1.35079 1.30985 0.85301 0.78202 0.78430 0.78533 1.19761 1.19930 1.19298 1.21930 0.84511 0.97384 0.93351 1.20667 1.02278 0.88889 1.03086 1.21395 0.95516 1.00618 0.96971 1.21209 0.92332 0.99430 0.99326 0.92250 0.92333 0.92416 0.92142 0.91997 0.89791 0.89984 0.83267 0.85713 0.75953 0.94629 0.92494 0.91606 0.89133 0.90108 0.87850 0.84590 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 71.98 0.71 -0.46 16 2 C -0.12 -1.15 5.92 30.59 0.18 -0.97 16 3 C -0.08 -0.84 5.34 29.85 0.16 -0.68 16 4 C -0.08 -1.31 5.13 -19.85 -0.10 -1.42 16 5 C -0.11 -2.00 9.69 22.25 0.22 -1.78 16 6 C -0.13 -3.16 9.58 22.37 0.21 -2.94 16 7 C 0.05 1.44 5.14 22.51 0.12 1.56 16 8 O -0.29 -9.01 9.87 -0.44 0.00 -9.02 16 9 C 0.55 19.37 7.83 70.20 0.55 19.92 16 10 O -0.53 -19.79 14.38 19.73 0.28 -19.51 16 11 C -0.32 -12.00 6.13 -20.16 -0.12 -12.12 16 12 C 0.10 3.52 11.87 85.67 1.02 4.54 16 13 N -0.33 -14.46 12.50 -56.25 -0.70 -15.16 16 14 N -0.33 -15.14 3.56 -336.65 -1.20 -16.34 16 15 C 0.26 13.36 5.97 85.63 0.51 13.87 16 16 C -0.56 -30.18 9.39 25.60 0.24 -29.94 16 17 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 18 C 0.03 1.37 5.46 84.65 0.46 1.83 16 19 N -0.91 -50.30 13.29 21.45 0.28 -50.01 16 20 Si 0.97 42.14 29.54 68.60 2.03 44.16 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 C 0.17 6.70 7.01 42.16 0.30 7.00 16 25 C -0.09 -3.19 9.56 71.23 0.68 -2.51 16 26 C -0.13 -2.93 9.99 22.37 0.22 -2.71 16 27 C -0.11 -1.88 9.69 22.26 0.22 -1.66 16 28 H 0.06 0.41 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 34 H 0.08 0.77 8.08 -2.38 -0.02 0.75 16 35 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.12 2.99 8.06 -2.91 -0.02 2.96 16 37 H 0.22 5.95 8.06 -2.91 -0.02 5.93 16 38 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 2.84 7.01 -2.39 -0.02 2.82 16 40 H 0.27 14.09 8.31 -92.70 -0.77 13.32 16 41 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.08 2.75 7.04 -2.38 -0.02 2.73 16 43 H 0.10 3.37 6.52 -2.39 -0.02 3.36 16 44 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 45 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -64.33 388.21 7.25 -57.08 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.99 Total: 17.28 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 5.57 Total: -8.48 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -1.62 Total: -81.52 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: 0.28 Total: -28.52 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -64.33 7.25 -57.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889427912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.768 kcal (2) G-P(sol) polarization free energy of solvation -64.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds