Wall clock time and date at job start Tue Mar 31 2020 15:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46856 * 2 1 4 4 C 1.52996 * 109.47010 * 240.00317 * 2 1 3 5 5 C 1.50699 * 109.47193 * 119.99759 * 2 1 3 6 6 C 1.34336 * 126.16287 * 75.00725 * 5 2 1 7 7 O 1.34753 * 107.10929 * 179.97438 * 6 5 2 8 8 C 1.33966 * 107.75661 * 359.97438 * 7 6 5 9 9 C 1.50707 * 125.61590 * 180.02562 * 8 7 6 10 10 N 1.46495 * 109.46823 * 270.01932 * 9 8 7 11 11 C 1.34774 * 120.00222 * 179.97438 * 10 9 8 12 12 O 1.21584 * 119.99838 * 0.02562 * 11 10 9 13 13 C 1.47637 * 120.00661 * 179.97438 * 11 10 9 14 14 C 1.40022 * 119.89301 * 359.72848 * 13 11 10 15 15 C 1.36321 * 120.10721 * 179.71110 * 14 13 11 16 16 C 1.40881 * 119.88774 * 0.56202 * 15 14 13 17 17 C 1.41115 * 120.10266 * 179.68967 * 16 15 14 18 18 H 1.07994 * 120.00633 * 204.64537 * 17 16 15 19 19 C 1.40230 * 119.99655 * 24.65081 * 17 16 15 20 20 N 1.30645 * 119.99785 * 17.87187 * 19 17 16 21 21 Si 1.86794 * 120.00113 * 197.87288 * 19 17 16 22 22 H 1.48513 * 109.47054 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47424 * 119.99698 * 21 19 17 24 24 H 1.48502 * 109.47390 * 239.99956 * 21 19 17 25 25 C 1.40895 * 119.79847 * 359.71565 * 16 15 14 26 26 C 1.36312 * 119.88977 * 359.97438 * 25 16 15 27 27 N 1.30250 * 108.76031 * 0.26066 * 8 7 6 28 28 H 1.08998 * 109.46995 * 299.99571 * 1 2 3 29 29 H 1.08995 * 109.47292 * 59.99858 * 1 2 3 30 30 H 1.09001 * 109.47043 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46971 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46916 * 300.00199 * 3 2 1 33 33 H 1.08998 * 109.46968 * 60.00413 * 3 2 1 34 34 H 1.08997 * 109.47221 * 299.99032 * 4 2 1 35 35 H 1.08995 * 109.47236 * 59.99790 * 4 2 1 36 36 H 1.09003 * 109.46907 * 179.97438 * 4 2 1 37 37 H 1.07992 * 126.44218 * 359.97053 * 6 5 2 38 38 H 1.09000 * 109.46974 * 150.02177 * 9 8 7 39 39 H 1.09000 * 109.47249 * 30.02142 * 9 8 7 40 40 H 0.97000 * 120.00341 * 0.02562 * 10 9 8 41 41 H 1.07997 * 119.94443 * 0.02562 * 14 13 11 42 42 H 1.07996 * 120.05186 * 180.25091 * 15 14 13 43 43 H 0.97005 * 119.99884 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.05295 * 179.97438 * 25 16 15 45 45 H 1.07995 * 119.94551 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2305 6 6 2.0321 -2.0381 1.4349 7 8 2.5645 -2.2515 2.6543 8 6 2.8819 -1.0591 3.1759 9 6 3.5056 -0.8309 4.5288 10 7 2.4503 -0.6700 5.5321 11 6 2.7745 -0.4544 6.8224 12 8 3.9427 -0.3930 7.1536 13 6 1.7110 -0.2916 7.8335 14 6 0.3663 -0.3559 7.4485 15 6 -0.6191 -0.2120 8.3795 16 6 -0.2826 0.0135 9.7288 17 6 -1.2991 0.1696 10.6951 18 1 -1.1001 0.7168 11.6046 19 6 -2.5675 -0.3860 10.4744 20 7 -2.7233 -1.3225 9.5768 21 14 -4.0345 0.2128 11.4637 22 1 -3.5957 1.2717 12.4081 23 1 -5.0601 0.7655 10.5430 24 1 -4.6139 -0.9222 12.2262 25 6 1.0719 0.0833 10.1104 26 6 2.0503 -0.0681 9.1734 27 7 2.5579 -0.1292 2.3233 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6768 -1.7488 -1.2492 35 1 1.6766 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.6727 -2.7924 0.7508 38 1 4.1189 0.0697 4.4988 39 1 4.1285 -1.6862 4.7906 40 1 1.5183 -0.7193 5.2679 41 1 0.1095 -0.5248 6.4132 42 1 -1.6559 -0.2658 8.0822 43 1 -3.6008 -1.7065 9.4239 44 1 1.3345 0.2564 11.1435 45 1 3.0888 -0.0144 9.4649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889558960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:46 Heat of formation + Delta-G solvation = -13.852359 kcal Electronic energy + Delta-G solvation = -26591.583498 eV Core-core repulsion = 22767.722522 eV Total energy + Delta-G solvation = -3823.860976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.55370 -39.15062 -37.62039 -37.16858 -34.86104 -33.95083 -33.89591 -30.87181 -29.81573 -29.46005 -27.83876 -27.55095 -26.79543 -25.39185 -23.26064 -22.08783 -21.43263 -20.89954 -19.79816 -19.50228 -17.60306 -17.49659 -16.84145 -16.75961 -15.60702 -15.43319 -15.23881 -14.72659 -14.40176 -14.36175 -14.21753 -13.97738 -13.72708 -13.38100 -13.13879 -12.75938 -12.69175 -12.63649 -12.32083 -12.11348 -11.94397 -11.93939 -11.53522 -11.47632 -11.39865 -11.29646 -11.22030 -10.98962 -10.97014 -10.67665 -10.59133 -10.07545 -9.59238 -9.38144 -9.25407 -8.84695 -8.79411 -7.74602 -7.57408 -7.06361 -4.62785 1.21706 2.18434 2.40774 2.56270 2.88488 2.93861 2.99416 3.02017 3.60933 3.72043 3.81097 3.88395 4.33094 4.52327 4.52926 4.68605 4.85809 4.92069 5.26083 5.31337 5.33440 5.43657 5.47461 5.53715 5.55369 5.62421 5.66990 5.70352 5.75340 5.80999 5.98506 6.01824 6.03188 6.12900 6.20316 6.29608 6.69680 6.75598 6.80276 7.00784 7.10451 7.40996 7.58748 7.60748 7.74996 7.83921 8.04095 8.10911 8.37594 8.60627 8.72671 8.95230 9.85516 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014027 B = 0.002504 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.681088 B =11178.957131 C =12520.138644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.012 3.988 3 C -0.131 4.131 4 C -0.140 4.140 5 C -0.003 4.003 6 C -0.070 4.070 7 O -0.194 6.194 8 C 0.180 3.820 9 C 0.224 3.776 10 N -0.739 5.739 11 C 0.578 3.422 12 O -0.572 6.572 13 C -0.284 4.284 14 C -0.061 4.061 15 C -0.178 4.178 16 C 0.129 3.871 17 C -0.440 4.440 18 H 0.086 0.914 19 C 0.074 3.926 20 N -0.770 5.770 21 Si 0.913 3.087 22 H -0.257 1.257 23 H -0.269 1.269 24 H -0.271 1.271 25 C -0.239 4.239 26 C -0.020 4.020 27 N -0.456 5.456 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.213 0.787 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.401 0.599 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.286 0.714 44 H 0.099 0.901 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.394 -0.786 -18.457 18.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.011 3.989 3 C -0.189 4.189 4 C -0.198 4.198 5 C -0.123 4.123 6 C -0.141 4.141 7 O -0.080 6.080 8 C -0.028 4.028 9 C 0.099 3.901 10 N -0.395 5.395 11 C 0.373 3.627 12 O -0.453 6.453 13 C -0.289 4.289 14 C -0.080 4.080 15 C -0.197 4.197 16 C 0.125 3.875 17 C -0.468 4.468 18 H 0.104 0.896 19 C -0.148 4.148 20 N -0.393 5.393 21 Si 0.737 3.263 22 H -0.180 1.180 23 H -0.194 1.194 24 H -0.196 1.196 25 C -0.258 4.258 26 C -0.039 4.039 27 N -0.186 5.186 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.229 0.771 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.237 0.763 41 H 0.105 0.895 42 H 0.138 0.862 43 H 0.097 0.903 44 H 0.117 0.883 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.166 -0.322 -18.177 18.454 hybrid contribution -1.386 -0.794 -0.072 1.599 sum 1.780 -1.116 -18.249 18.370 Atomic orbital electron populations 1.21909 0.93151 1.02146 1.02529 1.18948 0.95455 0.95527 0.88968 1.21720 1.01285 0.93873 1.01999 1.21927 1.01441 1.00064 0.96375 1.21700 1.03205 0.91075 0.96323 1.24745 1.04158 0.98781 0.86448 1.84493 1.60108 1.35420 1.27944 1.26287 1.00782 0.77466 0.98228 1.19372 0.89634 1.04029 0.77040 1.45890 1.09157 1.77074 1.07368 1.18576 0.89088 0.74152 0.80863 1.90650 1.20514 1.53532 1.80621 1.18798 0.91547 1.25162 0.93383 1.20465 0.92331 0.98094 0.97147 1.20968 0.98483 1.07680 0.92590 1.17805 0.91694 0.85569 0.92401 1.19897 0.94385 1.28240 1.04230 0.89596 1.26119 1.00821 0.92861 0.94985 1.69753 1.25766 1.16722 1.27078 0.86166 0.79990 0.79965 0.80212 1.18011 1.19374 1.19645 1.20716 0.92869 1.14467 0.97752 1.20356 0.97958 0.94000 0.91584 1.70371 1.14168 1.32817 1.01271 0.92071 0.91756 0.92507 0.92494 0.92609 0.91627 0.92502 0.91617 0.92296 0.77073 0.87622 0.89012 0.76317 0.89497 0.86200 0.90252 0.88288 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.46 37.16 0.31 -0.81 16 2 C 0.01 0.10 0.95 -155.66 -0.15 -0.04 16 3 C -0.13 -1.23 8.05 37.16 0.30 -0.93 16 4 C -0.14 -0.93 8.19 37.16 0.30 -0.62 16 5 C 0.00 -0.03 5.53 -82.81 -0.46 -0.49 16 6 C -0.07 -0.73 11.45 29.36 0.34 -0.40 16 7 O -0.19 -2.52 10.78 5.36 0.06 -2.46 16 8 C 0.18 2.47 7.71 -12.95 -0.10 2.37 16 9 C 0.22 3.23 6.30 -5.19 -0.03 3.20 16 10 N -0.74 -12.60 5.50 -62.50 -0.34 -12.94 16 11 C 0.58 12.13 7.76 -12.42 -0.10 12.03 16 12 O -0.57 -13.20 16.32 5.29 0.09 -13.12 16 13 C -0.28 -6.46 5.89 -104.73 -0.62 -7.08 16 14 C -0.06 -1.36 9.47 -39.60 -0.38 -1.74 16 15 C -0.18 -4.36 8.63 -39.27 -0.34 -4.70 16 16 C 0.13 3.26 5.58 -106.80 -0.60 2.66 16 17 C -0.44 -10.87 9.04 -37.74 -0.34 -11.21 16 18 H 0.09 2.03 7.91 -52.49 -0.42 1.61 16 19 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 20 N -0.77 -18.35 10.95 55.56 0.61 -17.74 16 21 Si 0.91 17.15 29.60 -169.99 -5.03 12.12 16 22 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 23 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 24 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 25 C -0.24 -5.73 9.73 -39.27 -0.38 -6.11 16 26 C -0.02 -0.46 9.52 -39.61 -0.38 -0.84 16 27 N -0.46 -6.36 10.67 -7.36 -0.08 -6.44 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 34 H 0.06 0.31 7.51 -51.93 -0.39 -0.08 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.21 1.36 7.66 -52.49 -0.40 0.96 16 38 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.40 6.50 6.47 -40.82 -0.26 6.24 16 41 H 0.09 1.68 6.37 -52.49 -0.33 1.35 16 42 H 0.12 2.98 6.16 -52.49 -0.32 2.65 16 43 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 44 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 45 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 LS Contribution 379.95 15.07 5.73 5.73 Total: -1.00 -28.93 379.95 -7.98 -36.92 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -6.31 Total: 11.02 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -2.70 Total: -13.09 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.19 Total: -37.12 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.14 Total: -15.57 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.12 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.93 -7.98 -36.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889558960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.065 kcal (2) G-P(sol) polarization free energy of solvation -28.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds