Wall clock time and date at job start Tue Mar 31 2020 15:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46856 * 2 1 4 4 C 1.52996 * 109.47010 * 240.00317 * 2 1 3 5 5 C 1.50699 * 109.47193 * 119.99759 * 2 1 3 6 6 C 1.34336 * 126.16287 * 75.00725 * 5 2 1 7 7 O 1.34753 * 107.10929 * 179.97438 * 6 5 2 8 8 C 1.33966 * 107.75661 * 359.97438 * 7 6 5 9 9 C 1.50707 * 125.61590 * 180.02562 * 8 7 6 10 10 N 1.46495 * 109.46823 * 270.01932 * 9 8 7 11 11 C 1.34774 * 120.00222 * 179.97438 * 10 9 8 12 12 O 1.21584 * 119.99838 * 0.02562 * 11 10 9 13 13 C 1.47637 * 120.00661 * 179.97438 * 11 10 9 14 14 C 1.40022 * 119.89301 * 359.72848 * 13 11 10 15 15 C 1.36321 * 120.10721 * 179.71110 * 14 13 11 16 16 C 1.40881 * 119.88774 * 0.56202 * 15 14 13 17 17 C 1.41115 * 120.10266 * 179.68967 * 16 15 14 18 18 H 1.07994 * 120.00633 * 204.64537 * 17 16 15 19 19 C 1.40230 * 119.99655 * 24.65081 * 17 16 15 20 20 N 1.30645 * 119.99785 * 17.87187 * 19 17 16 21 21 Si 1.86794 * 120.00113 * 197.87288 * 19 17 16 22 22 H 1.48513 * 109.47054 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47424 * 119.99698 * 21 19 17 24 24 H 1.48502 * 109.47390 * 239.99956 * 21 19 17 25 25 C 1.40895 * 119.79847 * 359.71565 * 16 15 14 26 26 C 1.36312 * 119.88977 * 359.97438 * 25 16 15 27 27 N 1.30250 * 108.76031 * 0.26066 * 8 7 6 28 28 H 1.08998 * 109.46995 * 299.99571 * 1 2 3 29 29 H 1.08995 * 109.47292 * 59.99858 * 1 2 3 30 30 H 1.09001 * 109.47043 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46971 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46916 * 300.00199 * 3 2 1 33 33 H 1.08998 * 109.46968 * 60.00413 * 3 2 1 34 34 H 1.08997 * 109.47221 * 299.99032 * 4 2 1 35 35 H 1.08995 * 109.47236 * 59.99790 * 4 2 1 36 36 H 1.09003 * 109.46907 * 179.97438 * 4 2 1 37 37 H 1.07992 * 126.44218 * 359.97053 * 6 5 2 38 38 H 1.09000 * 109.46974 * 150.02177 * 9 8 7 39 39 H 1.09000 * 109.47249 * 30.02142 * 9 8 7 40 40 H 0.97000 * 120.00341 * 0.02562 * 10 9 8 41 41 H 1.07997 * 119.94443 * 0.02562 * 14 13 11 42 42 H 1.07996 * 120.05186 * 180.25091 * 15 14 13 43 43 H 0.97005 * 119.99884 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.05295 * 179.97438 * 25 16 15 45 45 H 1.07995 * 119.94551 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2305 6 6 2.0321 -2.0381 1.4349 7 8 2.5645 -2.2515 2.6543 8 6 2.8819 -1.0591 3.1759 9 6 3.5056 -0.8309 4.5288 10 7 2.4503 -0.6700 5.5321 11 6 2.7745 -0.4544 6.8224 12 8 3.9427 -0.3930 7.1536 13 6 1.7110 -0.2916 7.8335 14 6 0.3663 -0.3559 7.4485 15 6 -0.6191 -0.2120 8.3795 16 6 -0.2826 0.0135 9.7288 17 6 -1.2991 0.1696 10.6951 18 1 -1.1001 0.7168 11.6046 19 6 -2.5675 -0.3860 10.4744 20 7 -2.7233 -1.3225 9.5768 21 14 -4.0345 0.2128 11.4637 22 1 -3.5957 1.2717 12.4081 23 1 -5.0601 0.7655 10.5430 24 1 -4.6139 -0.9222 12.2262 25 6 1.0719 0.0833 10.1104 26 6 2.0503 -0.0681 9.1734 27 7 2.5579 -0.1292 2.3233 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6768 -1.7488 -1.2492 35 1 1.6766 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.6727 -2.7924 0.7508 38 1 4.1189 0.0697 4.4988 39 1 4.1285 -1.6862 4.7906 40 1 1.5183 -0.7193 5.2679 41 1 0.1095 -0.5248 6.4132 42 1 -1.6559 -0.2658 8.0822 43 1 -3.6008 -1.7065 9.4239 44 1 1.3345 0.2564 11.1435 45 1 3.0888 -0.0144 9.4649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889558960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:45 Heat of formation + Delta-G solvation = -31.387454 kcal Electronic energy + Delta-G solvation = -26592.343877 eV Core-core repulsion = 22767.722522 eV Total energy + Delta-G solvation = -3824.621355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.49634 -40.82353 -38.96137 -38.33222 -36.21121 -35.68909 -35.01149 -32.41927 -31.34116 -31.09057 -28.78985 -28.14044 -27.94961 -26.88854 -24.09925 -23.74417 -22.87511 -22.39300 -21.39979 -20.37969 -19.38357 -18.81324 -17.98701 -17.86800 -17.24275 -16.73214 -16.40023 -15.92950 -15.77104 -15.65969 -15.17941 -15.08585 -14.99530 -14.70208 -14.49630 -14.35500 -13.95619 -13.84850 -13.66447 -13.25550 -13.21094 -12.97862 -12.86593 -12.63730 -12.57596 -12.39845 -12.36725 -12.19314 -11.94241 -11.79552 -11.75404 -11.46359 -11.39384 -11.13945 -10.87508 -10.27232 -9.84015 -9.59372 -9.43351 -8.81067 -6.49593 0.26284 0.40492 1.14225 1.37755 1.41511 1.44733 1.55146 1.62615 2.07900 2.16690 2.40959 2.75183 2.80229 3.55247 3.67502 3.77448 4.04322 4.05001 4.10450 4.26041 4.27452 4.36614 4.44431 4.46189 4.63189 4.76863 4.80043 4.83976 4.88358 4.91499 4.94205 5.01758 5.02152 5.03317 5.13205 5.16464 5.27830 5.29078 5.38701 5.40918 5.45325 5.57240 5.79262 5.91199 5.98325 6.20973 6.50748 6.53604 6.64648 6.75686 6.87029 7.30147 8.14235 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014027 B = 0.002504 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.681088 B =11178.957131 C =12520.138644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.011 3.989 3 C -0.129 4.129 4 C -0.136 4.136 5 C -0.022 4.022 6 C -0.055 4.055 7 O -0.203 6.203 8 C 0.161 3.839 9 C 0.227 3.773 10 N -0.725 5.725 11 C 0.581 3.419 12 O -0.595 6.595 13 C -0.293 4.293 14 C -0.054 4.054 15 C -0.198 4.198 16 C 0.101 3.899 17 C -0.470 4.470 18 H 0.087 0.913 19 C 0.037 3.963 20 N -0.797 5.797 21 Si 0.988 3.012 22 H -0.256 1.256 23 H -0.261 1.261 24 H -0.263 1.263 25 C -0.252 4.252 26 C -0.029 4.029 27 N -0.474 5.474 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.253 0.747 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.406 0.594 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.297 0.703 44 H 0.107 0.893 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -1.467 -20.480 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.010 3.990 3 C -0.187 4.187 4 C -0.194 4.194 5 C -0.142 4.142 6 C -0.126 4.126 7 O -0.088 6.088 8 C -0.045 4.045 9 C 0.104 3.896 10 N -0.379 5.379 11 C 0.375 3.625 12 O -0.479 6.479 13 C -0.298 4.298 14 C -0.073 4.073 15 C -0.218 4.218 16 C 0.098 3.902 17 C -0.497 4.497 18 H 0.105 0.895 19 C -0.182 4.182 20 N -0.421 5.421 21 Si 0.807 3.193 22 H -0.180 1.180 23 H -0.185 1.185 24 H -0.188 1.188 25 C -0.271 4.271 26 C -0.048 4.048 27 N -0.205 5.205 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.269 0.731 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.243 0.757 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.108 0.892 44 H 0.125 0.875 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.997 -1.017 -20.235 20.358 hybrid contribution -0.974 -0.610 0.412 1.221 sum 1.023 -1.628 -19.822 19.915 Atomic orbital electron populations 1.21901 0.92450 1.02824 1.02302 1.19091 0.95937 0.95002 0.88962 1.21698 1.00562 0.94630 1.01797 1.21913 1.01020 1.00936 0.95521 1.22220 1.03544 0.91858 0.96583 1.25562 1.01975 0.99415 0.85612 1.84488 1.60263 1.35066 1.28999 1.25925 1.02461 0.77946 0.98176 1.19369 0.88844 1.04484 0.76945 1.45714 1.10168 1.75369 1.06659 1.18296 0.88166 0.74225 0.81820 1.90635 1.21140 1.54763 1.81316 1.19077 0.92356 1.24533 0.93811 1.20672 0.91747 0.96649 0.98216 1.20991 0.98589 1.09295 0.92885 1.18155 0.92465 0.86365 0.93210 1.20156 0.95651 1.29330 1.04544 0.89507 1.26953 1.02949 0.92379 0.95957 1.69772 1.27096 1.17181 1.28007 0.85063 0.76127 0.79431 0.78638 1.17959 1.18531 1.18775 1.20870 0.92807 1.15001 0.98420 1.20523 0.98142 0.94056 0.92110 1.70346 1.14325 1.33586 1.02264 0.94291 0.89994 0.91373 0.93554 0.90606 0.93986 0.90819 0.90095 0.92965 0.73072 0.87598 0.88116 0.75745 0.86703 0.86964 0.89180 0.87510 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.46 71.98 0.61 -1.30 16 2 C 0.01 0.17 0.95 -52.93 -0.05 0.12 16 3 C -0.13 -2.30 8.05 71.98 0.58 -1.73 16 4 C -0.14 -1.38 8.19 71.98 0.59 -0.79 16 5 C -0.02 -0.46 5.53 41.26 0.23 -0.23 16 6 C -0.06 -1.01 11.45 66.93 0.77 -0.24 16 7 O -0.20 -4.91 10.78 -3.73 -0.04 -4.95 16 8 C 0.16 4.32 7.71 88.35 0.68 5.00 16 9 C 0.23 6.45 6.30 85.64 0.54 6.99 16 10 N -0.72 -24.31 5.50 -469.90 -2.58 -26.89 16 11 C 0.58 24.29 7.76 86.73 0.67 24.97 16 12 O -0.59 -27.49 16.32 -3.98 -0.06 -27.56 16 13 C -0.29 -13.41 5.89 -19.93 -0.12 -13.53 16 14 C -0.05 -2.41 9.47 22.26 0.21 -2.20 16 15 C -0.20 -9.90 8.63 22.47 0.19 -9.70 16 16 C 0.10 5.27 5.58 -21.28 -0.12 5.15 16 17 C -0.47 -23.65 9.04 23.46 0.21 -23.44 16 18 H 0.09 4.19 7.91 -2.91 -0.02 4.17 16 19 C 0.04 1.70 5.14 85.35 0.44 2.14 16 20 N -0.80 -38.10 10.95 21.87 0.24 -37.86 16 21 Si 0.99 34.69 29.60 68.60 2.03 36.72 16 22 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 23 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 24 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 25 C -0.25 -12.41 9.73 22.47 0.22 -12.19 16 26 C -0.03 -1.39 9.52 22.25 0.21 -1.18 16 27 N -0.47 -12.95 10.67 -291.98 -3.11 -16.07 16 28 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.04 0.93 8.09 -2.39 -0.02 0.91 16 34 H 0.07 0.50 7.51 -2.39 -0.02 0.48 16 35 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.25 2.16 7.66 -2.91 -0.02 2.13 16 38 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 39 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.41 12.81 6.47 -92.71 -0.60 12.21 16 41 H 0.12 4.35 6.37 -2.91 -0.02 4.33 16 42 H 0.11 5.70 6.16 -2.91 -0.02 5.68 16 43 H 0.30 12.56 8.29 -92.70 -0.77 11.79 16 44 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 45 H 0.11 4.92 7.63 -2.91 -0.02 4.90 16 Total: -1.00 -63.45 379.95 2.75 -60.71 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: 0.41 Total: 38.07 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 5.86 Total: -22.17 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -5.46 Total: -80.82 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.11 Total: -32.51 kcal Atomic # 14 Polarization: 34.69 SS G_CDS: 2.03 Total: 36.72 kcal Total: -63.45 2.75 -60.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889558960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.319 kcal (2) G-P(sol) polarization free energy of solvation -63.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds