Wall clock time and date at job start Tue Mar 31 2020 15:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.47143 * 2 1 4 4 C 1.52992 * 109.47054 * 120.00159 * 2 1 3 5 5 C 1.50701 * 109.46701 * 240.00144 * 2 1 3 6 6 C 1.34325 * 126.16769 * 74.71993 * 5 2 1 7 7 O 1.34755 * 107.11504 * 179.83697 * 6 5 2 8 8 C 1.33964 * 107.75491 * 0.41908 * 7 6 5 9 9 C 1.50696 * 125.62248 * 179.69697 * 8 7 6 10 10 N 1.46493 * 109.47402 * 270.04426 * 9 8 7 11 11 C 1.34780 * 120.00176 * 179.97438 * 10 9 8 12 12 O 1.21554 * 119.99758 * 0.02562 * 11 10 9 13 13 C 1.47889 * 120.00309 * 179.97438 * 11 10 9 14 14 C 1.39921 * 120.02265 * 359.72280 * 13 11 10 15 15 C 1.38326 * 120.35894 * 179.78831 * 14 13 11 16 16 C 1.37753 * 120.40922 * 0.46974 * 15 14 13 17 17 C 1.40748 * 120.03933 * 359.78580 * 16 15 14 18 18 C 1.41441 * 120.17645 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00046 * 334.92695 * 18 17 16 20 20 C 1.39940 * 119.99934 * 154.92944 * 18 17 16 21 21 N 1.30825 * 120.00102 * 342.58862 * 20 18 17 22 22 Si 1.86805 * 119.99714 * 162.58351 * 20 18 17 23 23 H 1.48504 * 109.46589 * 90.00589 * 22 20 18 24 24 H 1.48501 * 109.46951 * 209.99853 * 22 20 18 25 25 H 1.48493 * 109.47365 * 330.00462 * 22 20 18 26 26 C 1.38987 * 120.02560 * 180.02562 * 13 11 10 27 27 N 1.30261 * 108.76185 * 359.73446 * 8 7 6 28 28 H 1.09001 * 109.46916 * 60.00301 * 1 2 3 29 29 H 1.08998 * 109.46891 * 299.99811 * 1 2 3 30 30 H 1.08997 * 109.46842 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47194 * 59.99988 * 3 2 1 32 32 H 1.08997 * 109.47462 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47183 * 300.00148 * 3 2 1 34 34 H 1.09006 * 109.47570 * 60.00007 * 4 2 1 35 35 H 1.08998 * 109.47449 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.47377 * 300.00333 * 4 2 1 37 37 H 1.08004 * 126.44229 * 359.97438 * 6 5 2 38 38 H 1.09007 * 109.46670 * 30.04369 * 9 8 7 39 39 H 1.09001 * 109.47331 * 150.04115 * 9 8 7 40 40 H 0.97000 * 120.00394 * 359.97438 * 10 9 8 41 41 H 1.08002 * 119.82077 * 359.97438 * 14 13 11 42 42 H 1.08001 * 119.79855 * 180.23585 * 15 14 13 43 43 H 1.08002 * 119.97853 * 179.76568 * 16 15 14 44 44 H 0.96996 * 119.99824 * 180.02562 * 21 20 18 45 45 H 1.08001 * 120.20326 * 359.95474 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0323 -0.7104 -1.2305 6 6 2.0271 -0.2258 -2.4833 7 8 2.5642 -1.1730 -3.2772 8 6 2.8804 -2.2215 -2.5057 9 6 3.5017 -3.5081 -2.9848 10 7 2.4449 -4.4556 -3.3471 11 6 2.7669 -5.6813 -3.8058 12 8 3.9343 -6.0007 -3.9184 13 6 1.7000 -6.6381 -4.1710 14 6 0.3560 -6.2735 -4.0350 15 6 -0.6475 -7.1613 -4.3786 16 6 -0.3358 -8.4178 -4.8494 17 6 1.0105 -8.8043 -4.9879 18 6 1.3339 -10.0936 -5.4715 19 1 0.6307 -10.9053 -5.3572 20 6 2.5650 -10.3173 -6.0981 21 7 3.2658 -9.3063 -6.5432 22 14 3.2078 -12.0598 -6.2987 23 1 2.7308 -12.6177 -7.5897 24 1 4.6927 -12.0443 -6.2847 25 1 2.7109 -12.9025 -5.1815 26 6 2.0315 -7.9025 -4.6436 27 7 2.5614 -1.9460 -1.2731 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 -1.7490 1.2492 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -0.2075 2.1392 37 1 1.6630 0.7420 -2.7953 38 1 4.1248 -3.3080 -3.8566 39 1 4.1145 -3.9337 -2.1902 40 1 1.5133 -4.2009 -3.2568 41 1 0.1007 -5.2924 -3.6626 42 1 -1.6819 -6.8690 -4.2736 43 1 -1.1249 -9.1068 -5.1121 44 1 4.1190 -9.4614 -6.9778 45 1 3.0676 -8.1897 -4.7462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889563364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:50 Heat of formation + Delta-G solvation = -9.571934 kcal Electronic energy + Delta-G solvation = -26698.659388 eV Core-core repulsion = 22874.984025 eV Total energy + Delta-G solvation = -3823.675363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.59198 -39.26587 -37.65273 -37.07400 -34.93040 -34.03692 -33.69857 -30.90021 -29.78475 -29.44808 -27.81574 -27.58468 -26.53975 -25.24301 -23.29641 -22.53668 -21.45203 -20.92543 -19.79012 -19.47817 -17.91986 -17.30059 -16.87500 -16.25995 -15.48571 -15.46706 -15.08875 -14.81147 -14.68838 -14.41824 -14.38124 -13.97281 -13.73961 -13.39491 -13.14748 -12.72681 -12.70987 -12.65184 -12.51500 -12.34791 -11.97262 -11.66505 -11.56846 -11.50914 -11.25395 -11.16759 -11.08103 -11.02398 -10.77290 -10.62756 -10.51047 -10.08667 -9.71505 -9.30144 -9.22141 -8.89648 -8.86762 -7.66097 -7.53760 -6.81240 -4.42644 1.17522 2.15831 2.36406 2.52144 2.79926 3.07632 3.10244 3.15791 3.54478 3.78738 3.80863 3.91546 4.29636 4.48811 4.61650 4.65419 4.82227 4.88662 5.22638 5.26563 5.30086 5.39672 5.43734 5.50453 5.58564 5.59757 5.63725 5.65731 5.71213 5.75623 5.78230 5.98184 6.06093 6.09537 6.17193 6.25037 6.60227 6.69325 6.96078 6.98675 7.19269 7.35727 7.55037 7.65628 7.71238 7.88301 7.99938 8.15727 8.48208 8.77338 8.80582 8.83864 10.13685 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023985 B = 0.002299 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.135558 B =12176.513287 C =12708.643021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.012 3.988 3 C -0.141 4.141 4 C -0.132 4.132 5 C -0.002 4.002 6 C -0.070 4.070 7 O -0.194 6.194 8 C 0.180 3.820 9 C 0.222 3.778 10 N -0.734 5.734 11 C 0.570 3.430 12 O -0.541 6.541 13 C -0.127 4.127 14 C -0.217 4.217 15 C -0.097 4.097 16 C -0.210 4.210 17 C 0.098 3.902 18 C -0.459 4.459 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.784 5.784 22 Si 0.910 3.090 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.260 1.260 26 C -0.090 4.090 27 N -0.456 5.456 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.213 0.787 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.403 0.597 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.285 0.715 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.478 18.900 9.566 21.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.011 3.989 3 C -0.198 4.198 4 C -0.189 4.189 5 C -0.123 4.123 6 C -0.141 4.141 7 O -0.079 6.079 8 C -0.028 4.028 9 C 0.097 3.903 10 N -0.391 5.391 11 C 0.362 3.638 12 O -0.419 6.419 13 C -0.130 4.130 14 C -0.237 4.237 15 C -0.115 4.115 16 C -0.230 4.230 17 C 0.096 3.904 18 C -0.488 4.488 19 H 0.099 0.901 20 C -0.146 4.146 21 N -0.408 5.408 22 Si 0.734 3.266 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.184 1.184 26 C -0.110 4.110 27 N -0.186 5.186 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.229 0.771 38 H 0.113 0.887 39 H 0.126 0.874 40 H 0.239 0.761 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.269 18.303 9.786 20.794 hybrid contribution -0.333 0.149 -0.766 0.848 sum -1.601 18.452 9.020 20.601 Atomic orbital electron populations 1.21908 0.93164 1.02589 1.02031 1.18950 0.95440 0.93940 0.90581 1.21930 1.01479 0.94212 1.02203 1.21718 1.01334 1.00799 0.95042 1.21704 1.03127 0.91934 0.95530 1.24750 1.04001 0.95506 0.89846 1.84496 1.59968 1.23386 1.40077 1.26240 1.00880 0.91209 0.84424 1.19416 0.89544 0.79456 1.01882 1.45925 1.09400 1.14472 1.69277 1.18848 0.89386 0.80474 0.75134 1.90718 1.20254 1.77205 1.53677 1.19374 0.91611 0.95326 1.06690 1.20328 0.91982 0.99043 1.12347 1.20432 0.96742 0.94489 0.99874 1.21109 0.96047 0.96226 1.09625 1.17601 0.90529 0.93004 0.89280 1.19578 1.00931 0.95534 1.32745 0.90051 1.25969 0.96169 0.99246 0.93228 1.69781 1.12364 1.32820 1.25830 0.86282 0.78535 0.82177 0.79618 1.19447 1.19930 1.18366 1.21634 1.00881 0.91352 0.97125 1.70388 1.14158 1.14301 1.19714 0.92526 0.91745 0.92101 0.91602 0.92276 0.92509 0.91634 0.92466 0.92597 0.77054 0.88743 0.87388 0.76109 0.89380 0.88879 0.88554 0.90403 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.46 37.16 0.31 -0.72 16 2 C 0.01 0.10 0.95 -155.66 -0.15 -0.05 16 3 C -0.14 -0.88 8.19 37.16 0.30 -0.58 16 4 C -0.13 -1.18 8.05 37.15 0.30 -0.88 16 5 C 0.00 -0.03 5.53 -82.81 -0.46 -0.48 16 6 C -0.07 -0.69 11.45 29.35 0.34 -0.36 16 7 O -0.19 -2.43 10.78 5.36 0.06 -2.37 16 8 C 0.18 2.41 7.71 -12.95 -0.10 2.31 16 9 C 0.22 3.17 6.30 -5.20 -0.03 3.13 16 10 N -0.73 -12.35 5.50 -62.42 -0.34 -12.69 16 11 C 0.57 12.30 7.77 -12.31 -0.10 12.20 16 12 O -0.54 -13.17 16.33 5.32 0.09 -13.09 16 13 C -0.13 -2.98 5.87 -105.04 -0.62 -3.59 16 14 C -0.22 -4.58 9.55 -38.92 -0.37 -4.95 16 15 C -0.10 -2.07 10.01 -39.73 -0.40 -2.47 16 16 C -0.21 -4.97 9.78 -38.81 -0.38 -5.35 16 17 C 0.10 2.59 5.57 -106.87 -0.59 1.99 16 18 C -0.46 -11.98 9.05 -37.73 -0.34 -12.32 16 19 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 20 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 21 N -0.78 -20.61 10.97 55.55 0.61 -20.00 16 22 Si 0.91 18.67 29.59 -169.99 -5.03 13.64 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 26 C -0.09 -2.38 8.23 -38.45 -0.32 -2.69 16 27 N -0.46 -6.16 10.67 -7.36 -0.08 -6.24 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.29 7.52 -51.93 -0.39 -0.10 16 34 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.21 1.26 7.67 -52.48 -0.40 0.85 16 38 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.40 6.24 6.48 -40.82 -0.26 5.98 16 41 H 0.09 1.57 6.38 -52.49 -0.33 1.24 16 42 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 44 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 45 H 0.13 3.83 5.77 -52.49 -0.30 3.53 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -30.29 380.26 -7.97 -38.26 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.31 Total: 9.82 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -2.69 Total: -13.06 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.19 Total: -38.93 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.14 Total: -15.46 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.29 -7.97 -38.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889563364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.685 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds