Wall clock time and date at job start Tue Mar 31 2020 15:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.47143 * 2 1 4 4 C 1.52992 * 109.47054 * 120.00159 * 2 1 3 5 5 C 1.50701 * 109.46701 * 240.00144 * 2 1 3 6 6 C 1.34325 * 126.16769 * 74.71993 * 5 2 1 7 7 O 1.34755 * 107.11504 * 179.83697 * 6 5 2 8 8 C 1.33964 * 107.75491 * 0.41908 * 7 6 5 9 9 C 1.50696 * 125.62248 * 179.69697 * 8 7 6 10 10 N 1.46493 * 109.47402 * 270.04426 * 9 8 7 11 11 C 1.34780 * 120.00176 * 179.97438 * 10 9 8 12 12 O 1.21554 * 119.99758 * 0.02562 * 11 10 9 13 13 C 1.47889 * 120.00309 * 179.97438 * 11 10 9 14 14 C 1.39921 * 120.02265 * 359.72280 * 13 11 10 15 15 C 1.38326 * 120.35894 * 179.78831 * 14 13 11 16 16 C 1.37753 * 120.40922 * 0.46974 * 15 14 13 17 17 C 1.40748 * 120.03933 * 359.78580 * 16 15 14 18 18 C 1.41441 * 120.17645 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00046 * 334.92695 * 18 17 16 20 20 C 1.39940 * 119.99934 * 154.92944 * 18 17 16 21 21 N 1.30825 * 120.00102 * 342.58862 * 20 18 17 22 22 Si 1.86805 * 119.99714 * 162.58351 * 20 18 17 23 23 H 1.48504 * 109.46589 * 90.00589 * 22 20 18 24 24 H 1.48501 * 109.46951 * 209.99853 * 22 20 18 25 25 H 1.48493 * 109.47365 * 330.00462 * 22 20 18 26 26 C 1.38987 * 120.02560 * 180.02562 * 13 11 10 27 27 N 1.30261 * 108.76185 * 359.73446 * 8 7 6 28 28 H 1.09001 * 109.46916 * 60.00301 * 1 2 3 29 29 H 1.08998 * 109.46891 * 299.99811 * 1 2 3 30 30 H 1.08997 * 109.46842 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47194 * 59.99988 * 3 2 1 32 32 H 1.08997 * 109.47462 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47183 * 300.00148 * 3 2 1 34 34 H 1.09006 * 109.47570 * 60.00007 * 4 2 1 35 35 H 1.08998 * 109.47449 * 179.97438 * 4 2 1 36 36 H 1.08999 * 109.47377 * 300.00333 * 4 2 1 37 37 H 1.08004 * 126.44229 * 359.97438 * 6 5 2 38 38 H 1.09007 * 109.46670 * 30.04369 * 9 8 7 39 39 H 1.09001 * 109.47331 * 150.04115 * 9 8 7 40 40 H 0.97000 * 120.00394 * 359.97438 * 10 9 8 41 41 H 1.08002 * 119.82077 * 359.97438 * 14 13 11 42 42 H 1.08001 * 119.79855 * 180.23585 * 15 14 13 43 43 H 1.08002 * 119.97853 * 179.76568 * 16 15 14 44 44 H 0.96996 * 119.99824 * 180.02562 * 21 20 18 45 45 H 1.08001 * 120.20326 * 359.95474 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0323 -0.7104 -1.2305 6 6 2.0271 -0.2258 -2.4833 7 8 2.5642 -1.1730 -3.2772 8 6 2.8804 -2.2215 -2.5057 9 6 3.5017 -3.5081 -2.9848 10 7 2.4449 -4.4556 -3.3471 11 6 2.7669 -5.6813 -3.8058 12 8 3.9343 -6.0007 -3.9184 13 6 1.7000 -6.6381 -4.1710 14 6 0.3560 -6.2735 -4.0350 15 6 -0.6475 -7.1613 -4.3786 16 6 -0.3358 -8.4178 -4.8494 17 6 1.0105 -8.8043 -4.9879 18 6 1.3339 -10.0936 -5.4715 19 1 0.6307 -10.9053 -5.3572 20 6 2.5650 -10.3173 -6.0981 21 7 3.2658 -9.3063 -6.5432 22 14 3.2078 -12.0598 -6.2987 23 1 2.7308 -12.6177 -7.5897 24 1 4.6927 -12.0443 -6.2847 25 1 2.7109 -12.9025 -5.1815 26 6 2.0315 -7.9025 -4.6436 27 7 2.5614 -1.9460 -1.2731 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 -1.7490 1.2492 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -0.2075 2.1392 37 1 1.6630 0.7420 -2.7953 38 1 4.1248 -3.3080 -3.8566 39 1 4.1145 -3.9337 -2.1902 40 1 1.5133 -4.2009 -3.2568 41 1 0.1007 -5.2924 -3.6626 42 1 -1.6819 -6.8690 -4.2736 43 1 -1.1249 -9.1068 -5.1121 44 1 4.1190 -9.4614 -6.9778 45 1 3.0676 -8.1897 -4.7462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889563364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:48 Heat of formation + Delta-G solvation = -29.146880 kcal Electronic energy + Delta-G solvation = -26699.508221 eV Core-core repulsion = 22874.984025 eV Total energy + Delta-G solvation = -3824.524197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.50286 -40.96257 -38.88264 -38.32597 -36.32276 -35.59284 -35.01445 -32.45146 -31.33653 -31.03115 -28.63810 -28.12237 -27.61630 -27.03258 -24.19457 -24.07975 -22.86520 -22.41921 -21.36687 -20.38293 -19.58329 -18.41044 -17.91125 -17.78551 -17.06415 -16.70979 -16.47212 -16.45876 -15.91857 -15.53208 -15.18025 -15.08295 -14.99126 -14.72618 -14.49329 -14.34738 -14.26497 -13.95505 -13.46692 -13.24058 -12.97720 -12.95394 -12.78011 -12.56355 -12.55869 -12.37351 -12.20934 -12.18516 -11.95225 -11.93353 -11.76035 -11.52878 -11.46027 -11.06749 -10.95715 -10.36873 -9.84612 -9.50272 -9.40425 -8.66754 -6.38354 0.24823 0.33470 0.99629 1.37380 1.42421 1.46643 1.53476 1.60769 2.03807 2.19775 2.29239 2.76542 2.78602 3.55146 3.68114 3.76469 3.92860 4.03524 4.06300 4.23760 4.33935 4.36050 4.42268 4.55480 4.63464 4.78311 4.80056 4.84025 4.88561 4.89672 4.94588 5.03282 5.04589 5.07753 5.13955 5.17284 5.18269 5.30960 5.39369 5.42437 5.46007 5.50109 5.83023 5.90037 6.03836 6.25883 6.38563 6.60446 6.64197 6.87414 6.93015 7.15085 8.30341 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023985 B = 0.002299 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.135558 B =12176.513287 C =12708.643021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.011 3.989 3 C -0.137 4.137 4 C -0.130 4.130 5 C -0.021 4.021 6 C -0.053 4.053 7 O -0.202 6.202 8 C 0.161 3.839 9 C 0.225 3.775 10 N -0.713 5.713 11 C 0.570 3.430 12 O -0.578 6.578 13 C -0.137 4.137 14 C -0.199 4.199 15 C -0.095 4.095 16 C -0.215 4.215 17 C 0.067 3.933 18 C -0.496 4.496 19 H 0.085 0.915 20 C 0.029 3.971 21 N -0.824 5.824 22 Si 0.982 3.018 23 H -0.257 1.257 24 H -0.272 1.272 25 H -0.255 1.255 26 C -0.127 4.127 27 N -0.472 5.472 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.255 0.745 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.412 0.588 41 H 0.129 0.871 42 H 0.137 0.863 43 H 0.110 0.890 44 H 0.287 0.713 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.461 21.475 10.315 24.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.010 3.990 3 C -0.195 4.195 4 C -0.187 4.187 5 C -0.141 4.141 6 C -0.123 4.123 7 O -0.087 6.087 8 C -0.045 4.045 9 C 0.101 3.899 10 N -0.368 5.368 11 C 0.360 3.640 12 O -0.458 6.458 13 C -0.140 4.140 14 C -0.219 4.219 15 C -0.113 4.113 16 C -0.235 4.235 17 C 0.065 3.935 18 C -0.525 4.525 19 H 0.103 0.897 20 C -0.186 4.186 21 N -0.450 5.450 22 Si 0.803 3.197 23 H -0.182 1.182 24 H -0.197 1.197 25 H -0.179 1.179 26 C -0.148 4.148 27 N -0.203 5.203 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.270 0.730 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.249 0.751 41 H 0.147 0.853 42 H 0.155 0.845 43 H 0.128 0.872 44 H 0.098 0.902 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.290 20.920 10.546 23.658 hybrid contribution 0.150 -0.397 -0.873 0.971 sum -3.140 20.523 9.673 22.905 Atomic orbital electron populations 1.21895 0.92211 1.01749 1.03530 1.19093 0.96120 0.94838 0.88942 1.21920 1.00946 0.92722 1.03873 1.21699 1.00483 0.99950 0.96613 1.22218 1.03459 0.91328 0.97140 1.25582 1.01684 0.95890 0.89177 1.84493 1.60110 1.23612 1.40511 1.25765 1.02741 0.91361 0.84625 1.19378 0.88820 0.79611 1.02104 1.45678 1.10574 1.13249 1.67298 1.18640 0.88387 0.81572 0.75362 1.90696 1.21472 1.78197 1.55461 1.19666 0.93509 0.94828 1.05986 1.20789 0.90677 1.00567 1.09866 1.20902 0.99018 0.93262 0.98124 1.21412 0.95249 0.97684 1.09149 1.17958 0.91850 0.93553 0.90166 1.19855 1.02243 0.95999 1.34369 0.89723 1.26858 0.95972 1.03375 0.92363 1.69876 1.12896 1.35074 1.27138 0.85199 0.77739 0.76828 0.79963 1.18176 1.19687 1.17889 1.21449 0.99602 0.93372 1.00359 1.70363 1.14234 1.15900 1.19838 0.91254 0.90069 0.94069 0.90111 0.93136 0.90744 0.93868 0.93743 0.90625 0.72966 0.88192 0.87568 0.75076 0.85342 0.84487 0.87212 0.90211 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.46 71.99 0.61 -1.02 16 2 C 0.01 0.16 0.95 -52.93 -0.05 0.11 16 3 C -0.14 -1.26 8.19 71.98 0.59 -0.67 16 4 C -0.13 -2.18 8.05 71.98 0.58 -1.60 16 5 C -0.02 -0.41 5.53 41.26 0.23 -0.19 16 6 C -0.05 -0.89 11.45 66.93 0.77 -0.12 16 7 O -0.20 -4.64 10.78 -3.72 -0.04 -4.68 16 8 C 0.16 4.16 7.71 88.34 0.68 4.84 16 9 C 0.22 6.38 6.30 85.63 0.54 6.92 16 10 N -0.71 -23.53 5.50 -469.66 -2.58 -26.11 16 11 C 0.57 25.01 7.77 86.80 0.67 25.68 16 12 O -0.58 -29.37 16.33 -3.88 -0.06 -29.44 16 13 C -0.14 -6.50 5.87 -20.13 -0.12 -6.61 16 14 C -0.20 -7.99 9.55 22.70 0.22 -7.77 16 15 C -0.10 -3.81 10.01 22.18 0.22 -3.59 16 16 C -0.22 -10.08 9.78 22.77 0.22 -9.86 16 17 C 0.07 3.65 5.57 -21.32 -0.12 3.53 16 18 C -0.50 -26.93 9.05 23.47 0.21 -26.72 16 19 H 0.08 4.33 7.90 -2.91 -0.02 4.31 16 20 C 0.03 1.53 5.14 85.26 0.44 1.97 16 21 N -0.82 -45.81 10.97 21.83 0.24 -45.57 16 22 Si 0.98 39.54 29.59 68.60 2.03 41.57 16 23 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 24 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 25 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 26 C -0.13 -7.06 8.23 23.01 0.19 -6.88 16 27 N -0.47 -12.33 10.67 -291.98 -3.11 -15.44 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.42 7.52 -2.38 -0.02 0.41 16 34 H 0.04 0.90 8.09 -2.38 -0.02 0.88 16 35 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.25 1.77 7.67 -2.91 -0.02 1.75 16 38 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 39 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.41 11.96 6.48 -92.71 -0.60 11.36 16 41 H 0.13 4.07 6.38 -2.91 -0.02 4.05 16 42 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 43 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 44 H 0.29 14.68 8.30 -92.71 -0.77 13.91 16 45 H 0.10 6.26 5.77 -2.91 -0.02 6.25 16 Total: -1.00 -70.33 380.26 2.76 -67.57 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: 0.41 Total: 34.08 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 5.88 Total: -21.98 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -5.46 Total: -87.12 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.10 Total: -34.12 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -70.33 2.76 -67.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889563364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.422 kcal (2) G-P(sol) polarization free energy of solvation -70.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds