Wall clock time and date at job start Tue Mar 31 2020 14:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47537 * 2 1 4 4 C 1.35319 * 126.66579 * 89.99794 * 3 2 1 5 5 C 1.42271 * 103.92108 * 180.02562 * 4 3 2 6 6 C 1.48326 * 126.94021 * 179.97438 * 5 4 3 7 7 O 1.21494 * 119.99985 * 0.02562 * 6 5 4 8 8 N 1.34784 * 120.00252 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99864 * 179.72903 * 8 6 5 10 10 H 1.08999 * 109.47597 * 34.99540 * 9 8 6 11 11 C 1.52996 * 109.47222 * 155.00033 * 9 8 6 12 12 C 1.53008 * 109.47146 * 294.99811 * 11 9 8 13 13 C 1.50699 * 109.46992 * 179.97438 * 12 11 9 14 14 H 1.07997 * 120.00207 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99602 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99669 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99978 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47343 * 89.99718 * 17 15 13 19 19 H 1.48503 * 109.47014 * 210.00049 * 17 15 13 20 20 H 1.48504 * 109.46749 * 329.99804 * 17 15 13 21 21 C 1.50706 * 109.47100 * 274.99628 * 9 8 6 22 22 C 1.38233 * 120.00024 * 319.73086 * 21 9 8 23 23 C 1.38234 * 119.99893 * 179.78422 * 22 21 9 24 24 C 1.38226 * 120.00168 * 0.44502 * 23 22 21 25 25 C 1.38240 * 120.00217 * 359.80570 * 24 23 22 26 26 C 1.38232 * 119.99788 * 140.00038 * 21 9 8 27 27 N 1.30988 * 106.12363 * 0.26569 * 5 4 3 28 28 O 1.20905 * 111.43888 * 359.53286 * 27 5 4 29 29 H 1.08998 * 109.47271 * 59.99798 * 1 2 3 30 30 H 1.08997 * 109.47837 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47027 * 300.00517 * 1 2 3 32 32 H 1.09001 * 109.47027 * 239.99483 * 2 1 3 33 33 H 1.09000 * 109.46544 * 120.00299 * 2 1 3 34 34 H 1.07999 * 128.03908 * 0.02562 * 4 3 2 35 35 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 36 36 H 1.09004 * 109.47220 * 54.99381 * 11 9 8 37 37 H 1.09006 * 109.47725 * 174.99836 * 11 9 8 38 38 H 1.09004 * 109.46710 * 299.99883 * 12 11 9 39 39 H 1.08993 * 109.46846 * 59.99635 * 12 11 9 40 40 H 0.97006 * 119.99765 * 179.97438 * 16 15 13 41 41 H 1.08004 * 119.99658 * 359.97438 * 22 21 9 42 42 H 1.08010 * 119.99794 * 180.27042 * 23 22 21 43 43 H 1.07997 * 120.00184 * 179.83661 * 24 23 22 44 44 H 1.07997 * 120.00079 * 180.02562 * 25 24 23 45 45 H 1.08000 * 120.00332 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3018 2.1826 1.0854 5 6 2.7387 3.4198 0.5354 6 6 3.1648 4.6272 1.2841 7 8 3.1628 4.6208 2.4990 8 7 3.5542 5.7315 0.6166 9 6 3.9694 6.9260 1.3561 10 1 4.4855 6.6274 2.2686 11 6 4.9116 7.7618 0.4875 12 6 6.1995 6.9767 0.2307 13 6 7.1272 7.7998 -0.6255 14 1 6.8284 8.7844 -0.9533 15 6 8.3581 7.2960 -0.9894 16 7 8.7226 6.0976 -0.5888 17 14 9.5084 8.3164 -2.0500 18 1 10.3816 9.1435 -1.1791 19 1 10.3477 7.4145 -2.8791 20 1 8.7102 9.2023 -2.9350 21 6 2.7548 7.7446 1.7110 22 6 1.7304 7.8941 0.7951 23 6 0.6143 8.6412 1.1222 24 6 0.5268 9.2464 2.3619 25 6 1.5536 9.1012 3.2760 26 6 2.6678 8.3505 2.9504 27 7 2.6826 3.2794 -0.7657 28 8 2.2986 2.1754 -1.0750 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 2.2071 1.9139 2.1272 35 1 3.5554 5.7367 -0.3534 36 1 4.4269 7.9855 -0.4629 37 1 5.1500 8.6929 1.0018 38 1 6.6842 6.7530 1.1811 39 1 5.9611 6.0458 -0.2836 40 1 9.5883 5.7430 -0.8451 41 1 1.8006 7.4246 -0.1751 42 1 -0.1881 8.7545 0.4081 43 1 -0.3440 9.8323 2.6165 44 1 1.4850 9.5737 4.2447 45 1 3.4699 8.2369 3.6646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891159564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:48 Heat of formation + Delta-G solvation = 30.281251 kcal Electronic energy + Delta-G solvation = -27184.845809 eV Core-core repulsion = 23362.898610 eV Total energy + Delta-G solvation = -3821.947199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.10571 -39.95113 -38.62683 -35.80683 -35.12836 -33.91149 -33.16443 -31.54973 -30.71608 -30.35749 -30.25438 -26.78978 -24.86506 -24.27567 -23.50520 -22.58851 -22.33993 -21.11255 -20.09121 -19.84188 -17.89066 -17.56270 -16.92283 -16.76957 -16.28155 -15.74884 -15.22496 -14.89259 -14.65225 -14.47888 -14.40960 -14.32415 -13.63842 -13.57453 -13.29193 -13.16542 -12.95394 -12.91184 -12.56853 -12.14324 -12.11095 -11.77858 -11.73544 -11.27336 -11.16841 -10.96505 -10.95886 -10.68721 -10.56022 -10.43490 -10.19646 -9.83615 -9.60475 -9.54964 -9.17139 -8.85594 -8.74978 -8.46904 -8.36600 -6.01508 -4.04750 1.14236 1.49922 1.56022 1.63981 2.83834 3.16359 3.31034 3.34065 3.37413 3.40459 3.93431 4.03871 4.37325 4.44341 4.69153 4.81643 4.92435 4.97754 5.02433 5.03586 5.11525 5.23716 5.26673 5.34248 5.40756 5.45021 5.58282 5.62334 5.64023 5.74483 5.78062 5.84526 5.85316 6.09836 6.17477 6.28983 6.53310 6.58997 6.63041 6.69569 6.90836 6.94962 7.15323 7.61911 7.63727 7.74434 7.96921 8.01897 8.30418 8.37744 9.02034 9.59606 11.09403 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007291 B = 0.004066 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3839.494874 B = 6884.381771 C = 9964.549194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.041 4.041 3 C -0.037 4.037 4 C -0.181 4.181 5 C -0.019 4.019 6 C 0.600 3.400 7 O -0.526 6.526 8 N -0.693 5.693 9 C 0.182 3.818 10 H 0.098 0.902 11 C -0.113 4.113 12 C 0.023 3.977 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.081 4.081 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.105 4.105 27 N -0.327 5.327 28 O 0.123 5.877 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.179 0.821 35 H 0.408 0.592 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.017 0.983 39 H 0.018 0.982 40 H 0.260 0.740 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.341 -7.695 3.300 21.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.079 4.079 3 C -0.100 4.100 4 C -0.203 4.203 5 C -0.179 4.179 6 C 0.383 3.617 7 O -0.400 6.400 8 N -0.343 5.343 9 C 0.078 3.922 10 H 0.115 0.885 11 C -0.151 4.151 12 C -0.014 4.014 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.082 4.082 22 C -0.126 4.126 23 C -0.141 4.141 24 C -0.147 4.147 25 C -0.139 4.139 26 C -0.123 4.123 27 N -0.028 5.028 28 O 0.047 5.953 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.196 0.804 35 H 0.244 0.756 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.035 0.965 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.871 -6.932 3.172 20.352 hybrid contribution 0.690 0.218 -0.320 0.792 sum -18.180 -6.714 2.852 19.589 Atomic orbital electron populations 1.21809 0.93465 1.02725 1.02953 1.20129 0.96601 0.86195 1.05006 1.24490 1.02719 0.97238 0.85601 1.22403 1.04763 0.91716 1.01414 1.23567 1.06093 0.98128 0.90092 1.16846 0.77435 0.81053 0.86379 1.90770 1.54073 1.82740 1.12457 1.45869 1.65331 1.12252 1.10880 1.20227 0.91600 0.83275 0.97125 0.88451 1.21999 0.96771 0.98620 0.97680 1.19110 0.89967 0.95228 0.97063 1.21207 1.00917 1.02163 1.31807 0.92628 1.25020 0.98106 0.94994 0.96239 1.69974 1.21192 1.16372 1.45634 0.86601 0.80898 0.80073 0.80476 1.20660 1.21238 1.19866 1.20367 0.96132 0.97677 0.94049 1.20935 0.93689 0.98751 0.99185 1.21069 0.97985 0.98230 0.96847 1.21065 0.98863 1.00496 0.94276 1.21083 0.94145 0.99320 0.99367 1.21034 0.98107 0.97214 0.95985 1.74211 1.13692 0.99190 1.15667 1.84781 1.60013 1.17119 1.33427 0.91984 0.91217 0.92016 0.89080 0.88314 0.80379 0.75627 0.92412 0.91160 0.96491 0.96321 0.92992 0.86496 0.86477 0.86544 0.86274 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.89 37.16 0.37 -0.45 16 2 C -0.04 -0.25 6.50 -27.89 -0.18 -0.44 16 3 C -0.04 -0.40 6.73 -35.35 -0.24 -0.63 16 4 C -0.18 -2.29 10.92 -39.07 -0.43 -2.71 16 5 C -0.02 -0.31 7.19 -82.53 -0.59 -0.90 16 6 C 0.60 10.87 7.81 -12.11 -0.09 10.77 16 7 O -0.53 -10.62 16.61 5.37 0.09 -10.53 16 8 N -0.69 -12.20 3.78 -55.73 -0.21 -12.41 16 9 C 0.18 3.26 2.17 -69.09 -0.15 3.11 16 10 H 0.10 1.90 7.43 -51.93 -0.39 1.51 16 11 C -0.11 -2.26 4.67 -26.73 -0.12 -2.38 16 12 C 0.02 0.59 4.86 -27.88 -0.14 0.46 16 13 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 17 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 C -0.08 -1.31 4.91 -104.62 -0.51 -1.82 16 22 C -0.11 -1.59 9.32 -39.59 -0.37 -1.96 16 23 C -0.12 -1.60 10.05 -39.59 -0.40 -2.00 16 24 C -0.13 -1.59 10.05 -39.59 -0.40 -1.98 16 25 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 26 C -0.10 -1.57 9.67 -39.58 -0.38 -1.95 16 27 N -0.33 -5.07 11.84 33.29 0.39 -4.68 16 28 O 0.12 1.60 11.18 17.24 0.19 1.79 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.41 6.93 8.37 -40.82 -0.34 6.59 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.50 7.75 -51.93 -0.40 0.10 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.12 1.66 7.73 -52.48 -0.41 1.25 16 42 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 43 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 45 H 0.12 1.73 8.04 -52.49 -0.42 1.31 16 LS Contribution 389.64 15.07 5.87 5.87 Total: -1.00 -33.44 389.64 -8.97 -42.41 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.57 Total: 5.32 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -4.45 Total: -18.25 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.92 Total: -43.30 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.28 Total: -8.74 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.44 -8.97 -42.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891159564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.691 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds