Wall clock time and date at job start Tue Mar 31 2020 14:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47113 * 2 1 4 4 C 1.35320 * 126.66686 * 89.99819 * 3 2 1 5 5 C 1.42265 * 103.92314 * 179.97438 * 4 3 2 6 6 C 1.48334 * 126.94127 * 179.97438 * 5 4 3 7 7 O 1.21496 * 119.99486 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00502 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00306 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46581 * 325.00172 * 9 8 6 11 11 C 1.52992 * 109.47005 * 205.00035 * 9 8 6 12 12 C 1.52997 * 109.47482 * 64.99872 * 11 9 8 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 9 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.50700 * 109.46969 * 84.99373 * 9 8 6 22 22 C 1.38243 * 119.99881 * 39.73243 * 21 9 8 23 23 C 1.38230 * 119.99760 * 179.80336 * 22 21 9 24 24 C 1.38237 * 120.00010 * 0.39835 * 23 22 21 25 25 C 1.38228 * 120.00227 * 359.85651 * 24 23 22 26 26 C 1.38231 * 119.99932 * 359.95140 * 25 24 23 27 27 N 1.30984 * 106.12174 * 0.26005 * 5 4 3 28 28 O 1.20902 * 111.44350 * 359.53779 * 27 5 4 29 29 H 1.09004 * 109.46752 * 60.00051 * 1 2 3 30 30 H 1.09000 * 109.46954 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47087 * 300.00110 * 1 2 3 32 32 H 1.08996 * 109.47447 * 239.99491 * 2 1 3 33 33 H 1.09004 * 109.46752 * 119.99949 * 2 1 3 34 34 H 1.08001 * 128.03390 * 359.95932 * 4 3 2 35 35 H 0.97003 * 119.99459 * 359.97438 * 8 6 5 36 36 H 1.09002 * 109.47103 * 304.99625 * 11 9 8 37 37 H 1.08998 * 109.46862 * 185.00437 * 11 9 8 38 38 H 1.09002 * 109.47153 * 59.99783 * 12 11 9 39 39 H 1.09001 * 109.46832 * 299.99974 * 12 11 9 40 40 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 41 41 H 1.07998 * 119.99681 * 359.97438 * 22 21 9 42 42 H 1.08000 * 119.99734 * 180.22965 * 23 22 21 43 43 H 1.08005 * 119.99870 * 179.83255 * 24 23 22 44 44 H 1.07998 * 120.00222 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.00023 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3016 2.1826 1.0854 5 6 2.7396 3.4194 0.5354 6 6 3.1661 4.6268 1.2841 7 8 3.1635 4.6205 2.4991 8 7 3.5566 5.7307 0.6168 9 6 3.9784 6.9230 1.3563 10 1 3.3856 7.0145 2.2665 11 6 3.7705 8.1634 0.4853 12 6 2.2758 8.3577 0.2228 13 6 2.0711 9.5799 -0.6347 14 1 2.9220 10.1599 -0.9603 15 6 0.7975 9.9572 -1.0045 16 7 -0.2386 9.2507 -0.6085 17 14 0.5438 11.4718 -2.0680 18 1 1.2546 11.2943 -3.3598 19 1 -0.9070 11.6604 -2.3227 20 1 1.0820 12.6650 -1.3666 21 6 5.4365 6.8007 1.7168 22 6 6.3303 6.2640 0.8090 23 6 7.6685 6.1556 1.1381 24 6 8.1115 6.5763 2.3782 25 6 7.2169 7.1080 3.2879 26 6 5.8794 7.2201 2.9573 27 7 2.6841 3.2788 -0.7657 28 8 2.2997 2.1751 -1.0750 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.2060 1.9142 2.1272 35 1 3.5590 5.7355 -0.3532 36 1 4.2920 8.0330 -0.4630 37 1 4.1660 9.0391 0.9999 38 1 1.7543 8.4881 1.1710 39 1 1.8805 7.4819 -0.2919 40 1 -1.1346 9.5163 -0.8683 41 1 5.9835 5.9320 -0.1584 42 1 8.3674 5.7397 0.4275 43 1 9.1566 6.4890 2.6363 44 1 7.5630 7.4363 4.2569 45 1 5.1805 7.6360 3.6679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891159565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:51 Heat of formation + Delta-G solvation = 30.366225 kcal Electronic energy + Delta-G solvation = -27186.113181 eV Core-core repulsion = 23364.169666 eV Total energy + Delta-G solvation = -3821.943515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.10562 -39.95146 -38.62492 -35.80678 -35.11420 -33.90987 -33.16451 -31.54760 -30.71449 -30.35886 -30.23972 -26.78996 -24.85934 -24.25864 -23.50431 -22.58515 -22.33697 -21.11203 -20.08952 -19.84113 -17.86937 -17.58508 -16.91680 -16.76489 -16.28325 -15.74971 -15.21149 -14.87782 -14.66679 -14.48208 -14.39738 -14.31077 -13.62549 -13.56978 -13.28118 -13.15892 -12.98655 -12.86809 -12.56683 -12.12480 -12.09004 -11.77270 -11.71988 -11.25978 -11.16626 -10.96268 -10.94689 -10.68782 -10.57691 -10.43557 -10.19412 -9.83392 -9.60236 -9.54649 -9.18386 -8.85634 -8.74867 -8.46795 -8.36325 -6.01378 -4.04740 1.14399 1.50055 1.56202 1.64055 2.84052 3.16239 3.32409 3.34260 3.37012 3.39231 3.93570 4.03985 4.37908 4.44370 4.70632 4.84483 4.93318 4.97883 5.03089 5.04270 5.11684 5.24995 5.27008 5.34325 5.41013 5.47966 5.58467 5.64050 5.65191 5.75247 5.80735 5.84825 5.88529 6.09953 6.17600 6.28979 6.53322 6.59116 6.63184 6.69600 6.90952 6.94935 7.15464 7.61945 7.63438 7.74367 7.96905 8.02032 8.30431 8.37736 9.01826 9.59613 11.09536 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.006725 B = 0.004305 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4162.772043 B = 6502.575152 C = 9905.822940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.040 4.040 3 C -0.038 4.038 4 C -0.181 4.181 5 C -0.020 4.020 6 C 0.600 3.400 7 O -0.526 6.526 8 N -0.693 5.693 9 C 0.182 3.818 10 H 0.097 0.903 11 C -0.113 4.113 12 C 0.024 3.976 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.081 4.081 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.105 4.105 27 N -0.327 5.327 28 O 0.123 5.877 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.179 0.821 35 H 0.408 0.592 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.017 0.983 39 H 0.018 0.982 40 H 0.261 0.739 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.399 -17.814 3.361 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.078 4.078 3 C -0.101 4.101 4 C -0.203 4.203 5 C -0.179 4.179 6 C 0.383 3.617 7 O -0.400 6.400 8 N -0.343 5.343 9 C 0.078 3.922 10 H 0.115 0.885 11 C -0.151 4.151 12 C -0.013 4.013 13 C -0.562 4.562 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.082 4.082 22 C -0.126 4.126 23 C -0.141 4.141 24 C -0.147 4.147 25 C -0.139 4.139 26 C -0.123 4.123 27 N -0.027 5.027 28 O 0.047 5.953 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.196 0.804 35 H 0.244 0.756 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.035 0.965 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.491 -16.919 3.236 19.667 hybrid contribution -0.356 0.590 -0.334 0.766 sum 9.135 -16.329 2.902 18.934 Atomic orbital electron populations 1.21822 0.93332 1.02732 1.03242 1.20124 0.96772 0.86116 1.04799 1.24501 1.02718 0.97251 0.85602 1.22402 1.04798 0.91693 1.01413 1.23567 1.06236 0.97998 0.90092 1.16845 0.77311 0.81178 0.86379 1.90771 1.54233 1.82585 1.12456 1.45871 1.65179 1.12402 1.10887 1.20227 0.89856 0.85049 0.97087 0.88468 1.21994 1.01953 0.93460 0.97661 1.19105 0.88164 0.97023 0.97051 1.21172 0.92321 1.10888 1.31822 0.92676 1.25010 0.96172 0.96881 0.96215 1.69959 0.98494 1.39172 1.45571 0.86666 0.76989 0.83439 0.80952 1.20235 1.21292 1.20220 1.20367 0.96074 0.97701 0.94072 1.20935 0.93039 0.99326 0.99253 1.21070 0.95616 1.00617 0.96830 1.21066 0.99297 1.00059 0.94279 1.21078 0.93414 1.00035 0.99394 1.21031 0.95852 0.99538 0.95920 1.74208 1.13901 0.98962 1.15675 1.84781 1.60059 1.17069 1.33427 0.91836 0.91225 0.91872 0.89191 0.88395 0.80381 0.75622 0.92412 0.91155 0.96489 0.96336 0.92928 0.86497 0.86474 0.86542 0.86274 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 37.16 0.37 -0.58 16 2 C -0.04 -0.25 6.50 -27.89 -0.18 -0.43 16 3 C -0.04 -0.40 6.73 -35.35 -0.24 -0.64 16 4 C -0.18 -2.29 10.92 -39.08 -0.43 -2.72 16 5 C -0.02 -0.31 7.19 -82.53 -0.59 -0.91 16 6 C 0.60 10.87 7.81 -12.11 -0.09 10.77 16 7 O -0.53 -10.62 16.61 5.37 0.09 -10.53 16 8 N -0.69 -12.20 3.76 -55.73 -0.21 -12.41 16 9 C 0.18 3.27 2.17 -69.08 -0.15 3.12 16 10 H 0.10 1.89 7.44 -51.93 -0.39 1.51 16 11 C -0.11 -2.26 4.67 -26.74 -0.12 -2.38 16 12 C 0.02 0.60 4.86 -27.88 -0.14 0.46 16 13 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 17 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.08 -1.31 4.92 -104.62 -0.51 -1.82 16 22 C -0.11 -1.59 9.33 -39.58 -0.37 -1.96 16 23 C -0.12 -1.61 10.05 -39.58 -0.40 -2.00 16 24 C -0.13 -1.59 10.05 -39.59 -0.40 -1.99 16 25 C -0.12 -1.57 10.05 -39.59 -0.40 -1.97 16 26 C -0.10 -1.57 9.67 -39.58 -0.38 -1.95 16 27 N -0.33 -5.08 11.84 33.29 0.39 -4.68 16 28 O 0.12 1.60 11.18 17.24 0.19 1.79 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.41 6.94 8.36 -40.82 -0.34 6.60 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.49 7.75 -51.93 -0.40 0.09 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.12 1.66 7.71 -52.49 -0.40 1.25 16 42 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 43 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 44 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 45 H 0.12 1.73 8.04 -52.49 -0.42 1.31 16 LS Contribution 389.61 15.07 5.87 5.87 Total: -1.00 -33.40 389.61 -8.96 -42.37 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.57 Total: 5.53 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -4.45 Total: -18.39 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.92 Total: -43.31 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.28 Total: -8.74 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.40 -8.96 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891159565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.735 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds