Wall clock time and date at job start Tue Mar 31 2020 14:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47113 * 2 1 4 4 C 1.35320 * 126.66686 * 89.99819 * 3 2 1 5 5 C 1.42265 * 103.92314 * 179.97438 * 4 3 2 6 6 C 1.48334 * 126.94127 * 179.97438 * 5 4 3 7 7 O 1.21496 * 119.99486 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00502 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00306 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46581 * 325.00172 * 9 8 6 11 11 C 1.52992 * 109.47005 * 205.00035 * 9 8 6 12 12 C 1.52997 * 109.47482 * 64.99872 * 11 9 8 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 9 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.50700 * 109.46969 * 84.99373 * 9 8 6 22 22 C 1.38243 * 119.99881 * 39.73243 * 21 9 8 23 23 C 1.38230 * 119.99760 * 179.80336 * 22 21 9 24 24 C 1.38237 * 120.00010 * 0.39835 * 23 22 21 25 25 C 1.38228 * 120.00227 * 359.85651 * 24 23 22 26 26 C 1.38231 * 119.99932 * 359.95140 * 25 24 23 27 27 N 1.30984 * 106.12174 * 0.26005 * 5 4 3 28 28 O 1.20902 * 111.44350 * 359.53779 * 27 5 4 29 29 H 1.09004 * 109.46752 * 60.00051 * 1 2 3 30 30 H 1.09000 * 109.46954 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47087 * 300.00110 * 1 2 3 32 32 H 1.08996 * 109.47447 * 239.99491 * 2 1 3 33 33 H 1.09004 * 109.46752 * 119.99949 * 2 1 3 34 34 H 1.08001 * 128.03390 * 359.95932 * 4 3 2 35 35 H 0.97003 * 119.99459 * 359.97438 * 8 6 5 36 36 H 1.09002 * 109.47103 * 304.99625 * 11 9 8 37 37 H 1.08998 * 109.46862 * 185.00437 * 11 9 8 38 38 H 1.09002 * 109.47153 * 59.99783 * 12 11 9 39 39 H 1.09001 * 109.46832 * 299.99974 * 12 11 9 40 40 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 41 41 H 1.07998 * 119.99681 * 359.97438 * 22 21 9 42 42 H 1.08000 * 119.99734 * 180.22965 * 23 22 21 43 43 H 1.08005 * 119.99870 * 179.83255 * 24 23 22 44 44 H 1.07998 * 120.00222 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.00023 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3016 2.1826 1.0854 5 6 2.7396 3.4194 0.5354 6 6 3.1661 4.6268 1.2841 7 8 3.1635 4.6205 2.4991 8 7 3.5566 5.7307 0.6168 9 6 3.9784 6.9230 1.3563 10 1 3.3856 7.0145 2.2665 11 6 3.7705 8.1634 0.4853 12 6 2.2758 8.3577 0.2228 13 6 2.0711 9.5799 -0.6347 14 1 2.9220 10.1599 -0.9603 15 6 0.7975 9.9572 -1.0045 16 7 -0.2386 9.2507 -0.6085 17 14 0.5438 11.4718 -2.0680 18 1 1.2546 11.2943 -3.3598 19 1 -0.9070 11.6604 -2.3227 20 1 1.0820 12.6650 -1.3666 21 6 5.4365 6.8007 1.7168 22 6 6.3303 6.2640 0.8090 23 6 7.6685 6.1556 1.1381 24 6 8.1115 6.5763 2.3782 25 6 7.2169 7.1080 3.2879 26 6 5.8794 7.2201 2.9573 27 7 2.6841 3.2788 -0.7657 28 8 2.2997 2.1751 -1.0750 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.2060 1.9142 2.1272 35 1 3.5590 5.7355 -0.3532 36 1 4.2920 8.0330 -0.4630 37 1 4.1660 9.0391 0.9999 38 1 1.7543 8.4881 1.1710 39 1 1.8805 7.4819 -0.2919 40 1 -1.1346 9.5163 -0.8683 41 1 5.9835 5.9320 -0.1584 42 1 8.3674 5.7397 0.4275 43 1 9.1566 6.4890 2.6363 44 1 7.5630 7.4363 4.2569 45 1 5.1805 7.6360 3.6679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891159565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:50 Heat of formation + Delta-G solvation = 11.643414 kcal Electronic energy + Delta-G solvation = -27186.925063 eV Core-core repulsion = 23364.169666 eV Total energy + Delta-G solvation = -3822.755397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -46.21357 -41.31217 -39.84166 -37.31360 -35.86594 -35.28830 -34.95729 -33.05115 -31.93255 -31.75629 -31.12383 -28.47844 -26.31048 -25.18516 -24.87263 -23.66859 -23.40946 -22.68218 -21.55113 -21.14536 -18.97755 -18.67363 -18.56793 -18.05439 -17.81886 -17.13682 -16.62636 -16.34086 -15.79330 -15.70435 -15.48991 -15.33324 -15.00140 -14.72763 -14.62067 -14.37331 -14.27443 -13.99994 -13.85581 -13.50885 -13.44691 -12.93985 -12.85450 -12.59176 -12.54195 -12.41590 -12.20754 -11.98044 -11.89449 -11.85036 -11.59983 -11.52890 -11.46237 -11.28780 -10.59465 -10.49754 -10.31472 -9.82781 -9.64149 -8.22507 -6.34652 -0.00322 0.39863 0.49117 0.62153 1.37899 1.40998 1.48876 1.76375 1.97525 2.04446 2.38367 2.79282 2.90932 3.10828 3.44877 3.71543 3.87503 3.87974 4.04581 4.10437 4.14724 4.20294 4.26469 4.27550 4.35197 4.43919 4.57379 4.61578 4.68810 4.70660 4.88868 4.96614 5.02225 5.05831 5.10247 5.10848 5.14010 5.20300 5.40388 5.44995 5.55449 5.58870 5.60469 5.72437 5.79013 6.09972 6.17025 6.22527 6.81698 6.82946 7.00476 7.35047 8.88873 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.006725 B = 0.004305 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4162.772043 B = 6502.575152 C = 9905.822940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.037 4.037 3 C -0.014 4.014 4 C -0.193 4.193 5 C -0.049 4.049 6 C 0.596 3.404 7 O -0.555 6.555 8 N -0.692 5.692 9 C 0.192 3.808 10 H 0.072 0.928 11 C -0.095 4.095 12 C 0.032 3.968 13 C -0.544 4.544 14 H 0.063 0.937 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.965 3.035 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.266 1.266 21 C -0.101 4.101 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.121 4.121 26 C -0.124 4.124 27 N -0.350 5.350 28 O 0.129 5.871 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.193 0.807 35 H 0.409 0.591 36 H 0.067 0.933 37 H 0.073 0.927 38 H -0.017 1.017 39 H -0.005 1.005 40 H 0.263 0.737 41 H 0.116 0.884 42 H 0.144 0.856 43 H 0.152 0.848 44 H 0.147 0.853 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.323 -18.914 2.736 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.075 4.075 3 C -0.078 4.078 4 C -0.216 4.216 5 C -0.206 4.206 6 C 0.381 3.619 7 O -0.432 6.432 8 N -0.341 5.341 9 C 0.088 3.912 10 H 0.090 0.910 11 C -0.133 4.133 12 C -0.005 4.005 13 C -0.581 4.581 14 H 0.082 0.918 15 C -0.197 4.197 16 N -0.573 5.573 17 Si 0.789 3.211 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.191 1.191 21 C -0.102 4.102 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.139 4.139 26 C -0.143 4.143 27 N -0.049 5.049 28 O 0.051 5.949 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.131 0.869 33 H 0.142 0.858 34 H 0.210 0.790 35 H 0.245 0.755 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.002 0.998 39 H 0.013 0.987 40 H 0.071 0.929 41 H 0.134 0.866 42 H 0.162 0.838 43 H 0.170 0.830 44 H 0.165 0.835 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.440 -18.000 2.603 21.486 hybrid contribution -0.960 0.826 -0.125 1.272 sum 10.480 -17.175 2.479 20.272 Atomic orbital electron populations 1.21843 0.93156 1.04038 1.02142 1.20447 0.96652 0.83175 1.07219 1.25300 1.00177 0.98320 0.83959 1.22653 1.05427 0.90750 1.02790 1.23480 1.08152 0.98301 0.90685 1.17169 0.76693 0.81791 0.86276 1.90731 1.55601 1.83276 1.13601 1.45868 1.65040 1.12364 1.10875 1.19924 0.91527 0.84325 0.95449 0.90954 1.21724 0.98019 0.94878 0.98643 1.18938 0.91397 0.95506 0.94700 1.21633 0.92861 1.11644 1.32010 0.91836 1.25982 0.95837 1.00276 0.97598 1.70112 0.99010 1.41191 1.47009 0.85505 0.77036 0.79296 0.79249 1.19007 1.20971 1.19100 1.20175 0.94600 1.00043 0.95412 1.21046 0.94026 0.99719 0.99105 1.21420 0.95019 0.99938 0.97826 1.21513 1.00886 0.98196 0.93465 1.21421 0.92396 0.99268 1.00786 1.21198 0.97254 1.00237 0.95609 1.74199 1.14847 1.00244 1.15570 1.84743 1.59295 1.16579 1.34264 0.93061 0.88722 0.92917 0.86906 0.85796 0.78966 0.75477 0.91477 0.90805 0.99817 0.98665 0.92852 0.86613 0.83791 0.83050 0.83540 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.89 71.98 0.71 -0.86 16 2 C -0.04 -0.35 6.50 29.85 0.19 -0.16 16 3 C -0.01 -0.29 6.73 25.01 0.17 -0.12 16 4 C -0.19 -4.91 10.92 22.60 0.25 -4.66 16 5 C -0.05 -1.62 7.19 42.96 0.31 -1.31 16 6 C 0.60 23.03 7.81 86.93 0.68 23.71 16 7 O -0.55 -23.85 16.61 -3.70 -0.06 -23.91 16 8 N -0.69 -26.10 3.76 -448.52 -1.68 -27.78 16 9 C 0.19 7.36 2.17 44.24 0.10 7.46 16 10 H 0.07 3.10 7.44 -2.39 -0.02 3.08 16 11 C -0.09 -3.98 4.67 30.59 0.14 -3.84 16 12 C 0.03 1.71 4.86 29.85 0.15 1.85 16 13 C -0.54 -31.24 9.11 25.60 0.23 -31.01 16 14 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 15 C 0.00 0.06 5.46 84.66 0.46 0.52 16 16 N -0.93 -58.14 13.29 21.45 0.28 -57.86 16 17 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 C -0.10 -3.36 4.92 -19.86 -0.10 -3.46 16 22 C -0.12 -3.56 9.33 22.27 0.21 -3.35 16 23 C -0.12 -2.96 10.05 22.27 0.22 -2.74 16 24 C -0.12 -2.65 10.05 22.27 0.22 -2.43 16 25 C -0.12 -2.90 10.05 22.27 0.22 -2.68 16 26 C -0.12 -3.76 9.67 22.27 0.22 -3.54 16 27 N -0.35 -11.19 11.84 -49.51 -0.59 -11.77 16 28 O 0.13 3.33 11.18 71.87 0.80 4.13 16 29 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 32 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.19 4.15 8.06 -2.91 -0.02 4.13 16 35 H 0.41 14.96 8.36 -92.71 -0.78 14.18 16 36 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 38 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 39 H -0.01 -0.29 7.75 -2.39 -0.02 -0.31 16 40 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 41 H 0.12 3.33 7.71 -2.91 -0.02 3.31 16 42 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 43 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 44 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 45 H 0.12 3.56 8.04 -2.91 -0.02 3.53 16 Total: -1.00 -75.69 389.61 5.39 -70.30 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.22 Total: 26.63 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 4.38 Total: -26.62 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -1.99 Total: -97.41 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.74 Total: -19.77 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -75.69 5.39 -70.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891159565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.947 kcal (2) G-P(sol) polarization free energy of solvation -75.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds