Wall clock time and date at job start Tue Mar 31 2020 15:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47558 * 2 1 4 4 C 1.53007 * 109.47017 * 120.00303 * 2 1 3 5 5 C 1.50700 * 109.47263 * 64.99576 * 4 2 1 6 6 C 1.34177 * 126.10636 * 125.00221 * 5 4 2 7 7 O 1.35023 * 107.25216 * 179.76406 * 6 5 4 8 8 C 1.34197 * 107.73754 * 0.41588 * 7 6 5 9 9 N 1.38652 * 125.69544 * 179.84057 * 8 7 6 10 10 C 1.34774 * 120.00326 * 359.69624 * 9 8 7 11 11 O 1.21270 * 119.99758 * 359.97438 * 10 9 8 12 12 C 1.50695 * 120.00256 * 180.02562 * 10 9 8 13 13 C 1.50701 * 109.47556 * 179.97438 * 12 10 9 14 14 C 1.37630 * 120.12796 * 265.00188 * 13 12 10 15 15 C 1.38619 * 120.24694 * 180.29070 * 14 13 12 16 16 C 1.38655 * 120.49866 * 359.44683 * 15 14 13 17 17 C 1.37604 * 120.25111 * 0.55480 * 16 15 14 18 18 C 1.40697 * 120.12236 * 85.01918 * 13 12 10 19 19 C 1.41390 * 120.25030 * 359.96070 * 18 13 12 20 20 H 1.08004 * 119.99865 * 334.08548 * 19 18 13 21 21 C 1.39940 * 120.00399 * 154.08926 * 19 18 13 22 22 N 1.30822 * 119.99912 * 343.61139 * 21 19 18 23 23 Si 1.86803 * 120.00192 * 163.62242 * 21 19 18 24 24 H 1.48494 * 109.47012 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47407 * 119.99663 * 23 21 19 26 26 H 1.48508 * 109.46756 * 239.99409 * 23 21 19 27 27 N 1.30949 * 108.60613 * 359.57636 * 8 7 6 28 28 H 1.09001 * 109.47184 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47416 * 300.00057 * 1 2 3 30 30 H 1.09006 * 109.46680 * 60.00031 * 1 2 3 31 31 H 1.09003 * 109.47261 * 239.99708 * 2 1 3 32 32 H 1.08996 * 109.47424 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46764 * 300.00202 * 3 2 1 34 34 H 1.09003 * 109.47073 * 59.99593 * 3 2 1 35 35 H 1.09008 * 109.46685 * 304.99783 * 4 2 1 36 36 H 1.08997 * 109.47339 * 185.00494 * 4 2 1 37 37 H 1.08002 * 126.37593 * 0.02562 * 6 5 4 38 38 H 0.97004 * 120.00188 * 179.69701 * 9 8 7 39 39 H 1.09003 * 109.47324 * 59.99832 * 12 10 9 40 40 H 1.09000 * 109.47440 * 299.99911 * 12 10 9 41 41 H 1.07995 * 119.88141 * 0.02562 * 14 13 12 42 42 H 1.07999 * 119.74930 * 179.69896 * 15 14 13 43 43 H 1.08004 * 119.87487 * 180.29445 * 16 15 14 44 44 H 1.07992 * 120.12974 * 179.74704 * 17 16 15 45 45 H 0.97001 * 120.00439 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7214 1.2493 5 6 1.6412 -2.1734 1.1889 6 6 2.4687 -3.2252 1.2846 7 8 1.7126 -4.3397 1.1874 8 6 0.4371 -3.9556 1.0248 9 7 -0.6511 -4.8029 0.8822 10 6 -0.4714 -6.1386 0.8947 11 8 0.6422 -6.5993 1.0302 12 6 -1.6540 -7.0595 0.7392 13 6 -1.1857 -8.4911 0.7866 14 6 -0.9213 -9.1704 -0.3808 15 6 -0.4961 -10.4892 -0.3403 16 6 -0.3214 -11.1352 0.8740 17 6 -0.5799 -10.4756 2.0537 18 6 -1.0175 -9.1384 2.0245 19 6 -1.2856 -8.4504 3.2302 20 1 -1.2093 -7.3736 3.2661 21 6 -1.6499 -9.1645 4.3773 22 7 -2.0533 -10.4048 4.2750 23 14 -1.5603 -8.3468 6.0544 24 1 -1.0765 -6.9514 5.8995 25 1 -2.9101 -8.3372 6.6732 26 1 -0.6226 -9.1019 6.9238 27 7 0.3912 -2.6469 1.0289 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6052 -0.2618 2.1370 36 1 3.1262 -0.6444 1.2953 37 1 3.5397 -3.1875 1.4190 38 1 -1.5418 -4.4344 0.7735 39 1 -2.1402 -6.8681 -0.2174 40 1 -2.3621 -6.8815 1.5486 41 1 -1.0495 -8.6756 -1.3321 42 1 -0.2956 -11.0161 -1.2614 43 1 0.0148 -12.1614 0.8940 44 1 -0.4470 -10.9820 2.9983 45 1 -2.3055 -10.9000 5.0700 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894437202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:56 Heat of formation + Delta-G solvation = -3.137662 kcal Electronic energy + Delta-G solvation = -27257.263658 eV Core-core repulsion = 23433.867306 eV Total energy + Delta-G solvation = -3823.396352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.18363 -39.60531 -37.47526 -36.92808 -34.96848 -33.91892 -33.68195 -31.90155 -30.14214 -29.51632 -27.30248 -27.21673 -26.38330 -25.10913 -22.76677 -21.98286 -21.00174 -20.63922 -19.97118 -19.30353 -17.98305 -17.22036 -16.75029 -16.62618 -16.18835 -15.47606 -15.25154 -14.79444 -14.56083 -14.28630 -14.00657 -13.73982 -13.64172 -13.43867 -13.40570 -12.63834 -12.49903 -12.30985 -12.05667 -11.84685 -11.62554 -11.53221 -11.39411 -11.23453 -11.14319 -11.04842 -10.94236 -10.86522 -10.75696 -10.43501 -10.21078 -10.11578 -9.68295 -9.55173 -9.43930 -9.21623 -8.10217 -7.39299 -7.36835 -6.79677 -4.41394 1.58726 2.16549 2.51857 2.74580 2.93077 3.05341 3.10666 3.22014 3.22920 3.40667 3.90069 4.45703 4.60459 4.65266 4.77233 4.99045 5.06933 5.25264 5.36734 5.45314 5.49692 5.55239 5.65309 5.68799 5.80026 5.84718 5.89834 5.90602 5.95626 6.01207 6.15142 6.21471 6.23721 6.30385 6.43966 6.45417 6.69450 6.71643 7.02595 7.08334 7.23113 7.35450 7.58017 7.84973 7.98153 8.01700 8.07388 8.24191 8.34396 8.58711 8.84620 8.94377 10.14379 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014810 B = 0.003030 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.222381 B = 9240.127453 C =10388.540811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.031 4.031 5 C 0.008 3.992 6 C -0.098 4.098 7 O -0.181 6.181 8 C 0.436 3.564 9 N -0.625 5.625 10 C 0.509 3.491 11 O -0.472 6.472 12 C -0.061 4.061 13 C -0.192 4.192 14 C -0.077 4.077 15 C -0.240 4.240 16 C -0.104 4.104 17 C -0.158 4.158 18 C 0.130 3.870 19 C -0.457 4.457 20 H 0.073 0.927 21 C 0.078 3.922 22 N -0.792 5.792 23 Si 0.902 3.098 24 H -0.262 1.262 25 H -0.273 1.273 26 H -0.271 1.271 27 N -0.510 5.510 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.212 0.788 38 H 0.433 0.567 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.118 0.882 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.229 16.735 -4.870 17.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.107 4.107 3 C -0.205 4.205 4 C -0.069 4.069 5 C -0.112 4.112 6 C -0.170 4.170 7 O -0.065 6.065 8 C 0.140 3.860 9 N -0.287 5.287 10 C 0.297 3.703 11 O -0.339 6.339 12 C -0.100 4.100 13 C -0.194 4.194 14 C -0.095 4.095 15 C -0.259 4.259 16 C -0.122 4.122 17 C -0.177 4.177 18 C 0.128 3.872 19 C -0.487 4.487 20 H 0.092 0.908 21 C -0.140 4.140 22 N -0.417 5.417 23 Si 0.727 3.273 24 H -0.185 1.185 25 H -0.199 1.199 26 H -0.196 1.196 27 N -0.249 5.249 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.228 0.772 38 H 0.274 0.726 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.135 0.865 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.419 16.359 -4.679 17.355 hybrid contribution 0.299 0.056 0.891 0.941 sum 3.718 16.415 -3.788 17.252 Atomic orbital electron populations 1.22032 0.94397 1.04436 1.00426 1.21011 0.97074 0.95277 0.97387 1.21859 1.00676 0.96113 1.01812 1.20028 1.00426 0.87225 0.99190 1.21433 0.88114 0.97216 1.04397 1.24583 0.98020 0.82477 1.11932 1.84716 1.16962 1.35070 1.69780 1.21798 0.80855 0.86279 0.97052 1.43240 1.06698 1.05458 1.73259 1.22056 0.93289 0.80080 0.74915 1.90794 1.25783 1.74329 1.43026 1.20261 0.93988 0.92391 1.03402 1.18965 1.13555 0.93191 0.93706 1.20310 0.99135 0.94505 0.95564 1.20321 1.13615 0.95818 0.96144 1.20704 1.00398 0.97722 0.93423 1.21306 1.03522 0.96145 0.96772 1.17344 0.87000 0.91705 0.91163 1.19492 1.40928 0.94614 0.93616 0.90840 1.25874 0.92346 0.94647 1.01134 1.69817 1.30401 1.09972 1.31491 0.86352 0.78680 0.80720 0.81583 1.18527 1.19876 1.19624 1.70572 1.23753 1.04185 1.26397 0.89324 0.93274 0.93850 0.91478 0.92859 0.92696 0.92666 0.90257 0.90359 0.77160 0.72598 0.89502 0.87573 0.89580 0.89519 0.89461 0.86459 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.93 37.15 0.33 -1.25 16 2 C -0.09 -0.81 2.91 -90.62 -0.26 -1.07 16 3 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 4 C -0.03 -0.29 5.25 -27.88 -0.15 -0.44 16 5 C 0.01 0.11 6.29 -82.80 -0.52 -0.42 16 6 C -0.10 -1.33 12.05 29.30 0.35 -0.98 16 7 O -0.18 -3.25 9.09 -17.88 -0.16 -3.41 16 8 C 0.44 7.25 8.88 -86.60 -0.77 6.48 16 9 N -0.63 -9.56 5.39 -13.06 -0.07 -9.63 16 10 C 0.51 9.62 7.42 -10.99 -0.08 9.54 16 11 O -0.47 -11.12 14.79 -16.29 -0.24 -11.36 16 12 C -0.06 -1.10 5.18 -29.04 -0.15 -1.25 16 13 C -0.19 -4.44 4.43 -103.92 -0.46 -4.90 16 14 C -0.08 -1.71 9.66 -39.66 -0.38 -2.09 16 15 C -0.24 -5.44 10.05 -39.29 -0.39 -5.83 16 16 C -0.10 -2.48 10.02 -39.66 -0.40 -2.88 16 17 C -0.16 -4.14 8.68 -38.87 -0.34 -4.48 16 18 C 0.13 3.39 5.56 -106.83 -0.59 2.80 16 19 C -0.46 -11.73 8.14 -37.75 -0.31 -12.04 16 20 H 0.07 1.84 6.68 -52.48 -0.35 1.49 16 21 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 22 N -0.79 -20.04 10.97 55.55 0.61 -19.43 16 23 Si 0.90 18.71 29.59 -169.99 -5.03 13.68 16 24 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 N -0.51 -7.53 8.71 -10.57 -0.09 -7.62 16 28 H 0.09 1.08 5.48 -51.93 -0.28 0.79 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 37 H 0.21 1.97 8.06 -52.49 -0.42 1.55 16 38 H 0.43 4.88 8.82 -40.82 -0.36 4.52 16 39 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 40 H 0.11 1.85 7.06 -51.93 -0.37 1.48 16 41 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 44 H 0.12 3.16 6.22 -52.49 -0.33 2.84 16 45 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -31.50 375.62 -9.51 -41.00 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.31 Total: 8.81 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -3.87 Total: -17.70 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.45 Total: -36.67 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.40 Total: -14.77 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.50 -9.51 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894437202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.866 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds