Wall clock time and date at job start Tue Mar 31 2020 15:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47558 * 2 1 4 4 C 1.53007 * 109.47017 * 120.00303 * 2 1 3 5 5 C 1.50700 * 109.47263 * 64.99576 * 4 2 1 6 6 C 1.34177 * 126.10636 * 125.00221 * 5 4 2 7 7 O 1.35023 * 107.25216 * 179.76406 * 6 5 4 8 8 C 1.34197 * 107.73754 * 0.41588 * 7 6 5 9 9 N 1.38652 * 125.69544 * 179.84057 * 8 7 6 10 10 C 1.34774 * 120.00326 * 359.69624 * 9 8 7 11 11 O 1.21270 * 119.99758 * 359.97438 * 10 9 8 12 12 C 1.50695 * 120.00256 * 180.02562 * 10 9 8 13 13 C 1.50701 * 109.47556 * 179.97438 * 12 10 9 14 14 C 1.37630 * 120.12796 * 265.00188 * 13 12 10 15 15 C 1.38619 * 120.24694 * 180.29070 * 14 13 12 16 16 C 1.38655 * 120.49866 * 359.44683 * 15 14 13 17 17 C 1.37604 * 120.25111 * 0.55480 * 16 15 14 18 18 C 1.40697 * 120.12236 * 85.01918 * 13 12 10 19 19 C 1.41390 * 120.25030 * 359.96070 * 18 13 12 20 20 H 1.08004 * 119.99865 * 334.08548 * 19 18 13 21 21 C 1.39940 * 120.00399 * 154.08926 * 19 18 13 22 22 N 1.30822 * 119.99912 * 343.61139 * 21 19 18 23 23 Si 1.86803 * 120.00192 * 163.62242 * 21 19 18 24 24 H 1.48494 * 109.47012 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47407 * 119.99663 * 23 21 19 26 26 H 1.48508 * 109.46756 * 239.99409 * 23 21 19 27 27 N 1.30949 * 108.60613 * 359.57636 * 8 7 6 28 28 H 1.09001 * 109.47184 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47416 * 300.00057 * 1 2 3 30 30 H 1.09006 * 109.46680 * 60.00031 * 1 2 3 31 31 H 1.09003 * 109.47261 * 239.99708 * 2 1 3 32 32 H 1.08996 * 109.47424 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46764 * 300.00202 * 3 2 1 34 34 H 1.09003 * 109.47073 * 59.99593 * 3 2 1 35 35 H 1.09008 * 109.46685 * 304.99783 * 4 2 1 36 36 H 1.08997 * 109.47339 * 185.00494 * 4 2 1 37 37 H 1.08002 * 126.37593 * 0.02562 * 6 5 4 38 38 H 0.97004 * 120.00188 * 179.69701 * 9 8 7 39 39 H 1.09003 * 109.47324 * 59.99832 * 12 10 9 40 40 H 1.09000 * 109.47440 * 299.99911 * 12 10 9 41 41 H 1.07995 * 119.88141 * 0.02562 * 14 13 12 42 42 H 1.07999 * 119.74930 * 179.69896 * 15 14 13 43 43 H 1.08004 * 119.87487 * 180.29445 * 16 15 14 44 44 H 1.07992 * 120.12974 * 179.74704 * 17 16 15 45 45 H 0.97001 * 120.00439 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7214 1.2493 5 6 1.6412 -2.1734 1.1889 6 6 2.4687 -3.2252 1.2846 7 8 1.7126 -4.3397 1.1874 8 6 0.4371 -3.9556 1.0248 9 7 -0.6511 -4.8029 0.8822 10 6 -0.4714 -6.1386 0.8947 11 8 0.6422 -6.5993 1.0302 12 6 -1.6540 -7.0595 0.7392 13 6 -1.1857 -8.4911 0.7866 14 6 -0.9213 -9.1704 -0.3808 15 6 -0.4961 -10.4892 -0.3403 16 6 -0.3214 -11.1352 0.8740 17 6 -0.5799 -10.4756 2.0537 18 6 -1.0175 -9.1384 2.0245 19 6 -1.2856 -8.4504 3.2302 20 1 -1.2093 -7.3736 3.2661 21 6 -1.6499 -9.1645 4.3773 22 7 -2.0533 -10.4048 4.2750 23 14 -1.5603 -8.3468 6.0544 24 1 -1.0765 -6.9514 5.8995 25 1 -2.9101 -8.3372 6.6732 26 1 -0.6226 -9.1019 6.9238 27 7 0.3912 -2.6469 1.0289 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6052 -0.2618 2.1370 36 1 3.1262 -0.6444 1.2953 37 1 3.5397 -3.1875 1.4190 38 1 -1.5418 -4.4344 0.7735 39 1 -2.1402 -6.8681 -0.2174 40 1 -2.3621 -6.8815 1.5486 41 1 -1.0495 -8.6756 -1.3321 42 1 -0.2956 -11.0161 -1.2614 43 1 0.0148 -12.1614 0.8940 44 1 -0.4470 -10.9820 2.9983 45 1 -2.3055 -10.9000 5.0700 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894437202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:55 Heat of formation + Delta-G solvation = -20.821575 kcal Electronic energy + Delta-G solvation = -27258.030490 eV Core-core repulsion = 23433.867306 eV Total energy + Delta-G solvation = -3824.163184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.34285 -41.09811 -39.22053 -37.76737 -36.32032 -35.52523 -35.00764 -33.55020 -31.40436 -31.17173 -28.81358 -27.89123 -27.44954 -26.89244 -24.10393 -23.12193 -22.84335 -21.87833 -21.18108 -20.58579 -19.28490 -19.01028 -18.03814 -17.94683 -17.38683 -17.17706 -16.35550 -16.24733 -16.06118 -15.51472 -15.16954 -15.13085 -15.04163 -14.72971 -14.46560 -14.39895 -13.58751 -13.41201 -13.18684 -13.10735 -12.95127 -12.91285 -12.77891 -12.76199 -12.53608 -12.50961 -12.28334 -12.14618 -11.80467 -11.58641 -11.34637 -11.27523 -11.25727 -11.22448 -11.08832 -11.05053 -9.24616 -9.23186 -9.20926 -8.62654 -6.32561 0.39167 0.85007 1.04580 1.23293 1.32619 1.34534 1.46584 1.50290 1.91784 2.17241 2.21441 2.75947 3.43427 3.71353 3.81386 3.98503 4.07202 4.21047 4.22847 4.36904 4.41160 4.48762 4.58319 4.69553 4.74751 4.77181 4.79572 4.86639 4.90880 4.99402 5.02851 5.08525 5.16317 5.17516 5.19642 5.33121 5.35203 5.38861 5.52554 5.54244 5.73961 5.75804 5.91148 6.03302 6.13996 6.20732 6.38810 6.71087 6.82023 6.95963 6.98958 7.08578 8.33924 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014810 B = 0.003030 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.222381 B = 9240.127453 C =10388.540811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.029 4.029 5 C 0.002 3.998 6 C -0.102 4.102 7 O -0.215 6.215 8 C 0.404 3.596 9 N -0.608 5.608 10 C 0.517 3.483 11 O -0.527 6.527 12 C -0.058 4.058 13 C -0.195 4.195 14 C -0.086 4.086 15 C -0.243 4.243 16 C -0.114 4.114 17 C -0.194 4.194 18 C 0.098 3.902 19 C -0.482 4.482 20 H 0.071 0.929 21 C 0.039 3.961 22 N -0.822 5.822 23 Si 0.968 3.032 24 H -0.267 1.267 25 H -0.258 1.258 26 H -0.270 1.270 27 N -0.500 5.500 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.247 0.753 38 H 0.450 0.550 39 H 0.132 0.868 40 H 0.112 0.888 41 H 0.121 0.879 42 H 0.116 0.884 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.432 19.252 -5.597 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.106 4.106 3 C -0.200 4.200 4 C -0.066 4.066 5 C -0.117 4.117 6 C -0.172 4.172 7 O -0.100 6.100 8 C 0.109 3.891 9 N -0.270 5.270 10 C 0.306 3.694 11 O -0.399 6.399 12 C -0.098 4.098 13 C -0.197 4.197 14 C -0.104 4.104 15 C -0.262 4.262 16 C -0.133 4.133 17 C -0.213 4.213 18 C 0.095 3.905 19 C -0.512 4.512 20 H 0.089 0.911 21 C -0.176 4.176 22 N -0.449 5.449 23 Si 0.790 3.210 24 H -0.191 1.191 25 H -0.183 1.183 26 H -0.195 1.195 27 N -0.240 5.240 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.263 0.737 38 H 0.295 0.705 39 H 0.149 0.851 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.134 0.866 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.580 18.914 -5.423 19.999 hybrid contribution 0.282 -0.645 0.984 1.210 sum 3.862 18.269 -4.440 19.193 Atomic orbital electron populations 1.22005 0.95397 1.03028 1.00815 1.20996 0.96209 0.96554 0.96856 1.21809 1.01443 0.94496 1.02203 1.20202 1.02225 0.84759 0.99450 1.22056 0.87243 0.98863 1.03568 1.25428 0.99442 0.81567 1.10805 1.84701 1.17902 1.37224 1.70178 1.22080 0.80888 0.86863 0.99288 1.42821 1.07492 1.04423 1.72295 1.21973 0.92450 0.81060 0.73912 1.90774 1.27641 1.75570 1.45881 1.20300 0.93772 0.89614 1.06079 1.19453 1.11807 0.95471 0.92995 1.20773 0.98210 0.94571 0.96841 1.20742 1.12476 0.96353 0.96674 1.20969 1.00227 0.98693 0.93394 1.21312 1.06065 0.97113 0.96848 1.17734 0.87877 0.92109 0.92744 1.19626 1.42366 0.94566 0.94603 0.91120 1.26608 0.91679 0.95139 1.04204 1.69872 1.31188 1.11153 1.32657 0.85369 0.79181 0.79156 0.77314 1.19062 1.18280 1.19467 1.70638 1.24863 1.03238 1.25244 0.91498 0.93145 0.93249 0.92313 0.91619 0.92439 0.92186 0.89780 0.87590 0.73686 0.70534 0.85056 0.86962 0.86093 0.86625 0.87719 0.88575 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 8.93 71.98 0.64 -2.27 16 2 C -0.09 -1.40 2.91 -10.79 -0.03 -1.43 16 3 C -0.14 -1.63 9.19 71.98 0.66 -0.97 16 4 C -0.03 -0.47 5.25 29.85 0.16 -0.31 16 5 C 0.00 0.06 6.29 41.20 0.26 0.32 16 6 C -0.10 -2.63 12.05 66.89 0.81 -1.82 16 7 O -0.21 -7.72 9.09 12.21 0.11 -7.61 16 8 C 0.40 13.31 8.88 178.94 1.59 14.90 16 9 N -0.61 -18.25 5.39 -423.81 -2.28 -20.53 16 10 C 0.52 19.43 7.42 87.66 0.65 20.08 16 11 O -0.53 -25.32 14.79 17.90 0.26 -25.05 16 12 C -0.06 -2.05 5.18 29.10 0.15 -1.90 16 13 C -0.20 -8.98 4.43 -19.41 -0.09 -9.07 16 14 C -0.09 -3.70 9.66 22.22 0.21 -3.48 16 15 C -0.24 -10.78 10.05 22.46 0.23 -10.55 16 16 C -0.11 -5.54 10.02 22.22 0.22 -5.32 16 17 C -0.19 -10.57 8.68 22.73 0.20 -10.37 16 18 C 0.10 5.22 5.56 -21.29 -0.12 5.11 16 19 C -0.48 -25.53 8.14 23.46 0.19 -25.34 16 20 H 0.07 3.64 6.68 -2.91 -0.02 3.62 16 21 C 0.04 1.96 5.16 85.26 0.44 2.40 16 22 N -0.82 -43.07 10.97 21.82 0.24 -42.83 16 23 Si 0.97 39.12 29.59 68.60 2.03 41.15 16 24 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 26 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 27 N -0.50 -14.32 8.71 -301.69 -2.63 -16.95 16 28 H 0.07 1.56 5.48 -2.39 -0.01 1.55 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 1.32 8.14 -2.38 -0.02 1.31 16 36 H 0.11 1.14 8.11 -2.39 -0.02 1.13 16 37 H 0.25 4.01 8.06 -2.91 -0.02 3.99 16 38 H 0.45 9.62 8.82 -92.71 -0.82 8.81 16 39 H 0.13 3.38 8.05 -2.39 -0.02 3.36 16 40 H 0.11 3.83 7.06 -2.39 -0.02 3.81 16 41 H 0.12 4.29 8.06 -2.91 -0.02 4.26 16 42 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 43 H 0.10 4.52 8.06 -2.91 -0.02 4.49 16 44 H 0.10 5.51 6.22 -2.91 -0.02 5.49 16 45 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 Total: -1.00 -71.59 375.62 4.11 -67.49 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: 0.20 Total: 34.36 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 6.17 Total: -30.02 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -4.67 Total: -80.32 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: 0.38 Total: -32.66 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -71.59 4.11 -67.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894437202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.666 kcal (2) G-P(sol) polarization free energy of solvation -71.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds