Wall clock time and date at job start Tue Mar 31 2020 16:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35781 * 116.99974 * 2 1 4 4 C 1.39926 * 119.59321 * 0.02562 * 3 2 1 5 5 C 1.35929 * 120.76697 * 180.23199 * 4 3 2 6 6 C 1.40637 * 119.84142 * 359.49452 * 5 4 3 7 7 C 1.40402 * 121.08225 * 180.24808 * 6 5 4 8 8 C 1.39112 * 118.01007 * 180.24831 * 7 6 5 9 9 C 1.47678 * 120.26163 * 180.02562 * 8 7 6 10 10 O 1.21564 * 120.00361 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99525 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99620 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47110 * 180.02562 * 12 11 9 14 14 C 1.53009 * 109.47290 * 300.00208 * 13 12 11 15 15 C 1.53005 * 109.47116 * 59.99905 * 13 12 11 16 16 C 1.50705 * 109.47534 * 180.02562 * 13 12 11 17 17 H 1.07998 * 119.99256 * 0.02562 * 16 13 12 18 18 C 1.37876 * 119.99875 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00307 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99706 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46977 * 89.99748 * 20 18 16 22 22 H 1.48492 * 109.47300 * 210.00115 * 20 18 16 23 23 H 1.48499 * 109.47185 * 330.00470 * 20 18 16 24 24 C 1.40581 * 119.47245 * 359.97438 * 8 7 6 25 25 N 1.30808 * 121.51129 * 0.02562 * 24 8 7 26 26 C 1.33900 * 121.71751 * 359.95239 * 25 24 8 27 27 C 1.37695 * 119.59645 * 179.97438 * 3 2 1 28 28 H 1.09008 * 109.46559 * 299.99585 * 1 2 3 29 29 H 1.09001 * 109.47612 * 59.99129 * 1 2 3 30 30 H 1.09000 * 109.47162 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.61410 * 359.94547 * 4 3 2 32 32 H 1.08007 * 120.08056 * 179.72036 * 5 4 3 33 33 H 1.08006 * 120.99846 * 0.26504 * 7 6 5 34 34 H 0.96994 * 120.00088 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.47260 * 300.00328 * 12 11 9 36 36 H 1.09004 * 109.47323 * 60.00646 * 12 11 9 37 37 H 1.08999 * 109.46529 * 59.99377 * 14 13 12 38 38 H 1.08995 * 109.47408 * 179.97438 * 14 13 12 39 39 H 1.08998 * 109.46565 * 300.00132 * 14 13 12 40 40 H 1.09000 * 109.46979 * 60.00169 * 15 13 12 41 41 H 1.09004 * 109.47103 * 180.02562 * 15 13 12 42 42 H 1.08994 * 109.46929 * 300.00218 * 15 13 12 43 43 H 0.97001 * 119.99486 * 179.97438 * 19 18 16 44 44 H 1.07997 * 119.24567 * 180.02562 * 24 8 7 45 45 H 1.08005 * 120.16165 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.2750 2.3779 0.0005 5 6 1.8672 3.6014 -0.0042 6 6 3.2701 3.6999 0.0011 7 6 3.9089 4.9502 0.0016 8 6 5.2998 4.9731 0.0016 9 6 6.0229 6.2608 0.0027 10 8 5.4027 7.3063 0.0041 11 7 7.3707 6.2767 0.0033 12 6 8.0880 7.5540 0.0049 13 6 9.5954 7.2924 0.0046 14 6 9.9746 6.4928 1.2528 15 6 9.9746 6.4962 -1.2457 16 6 10.3335 8.6064 0.0069 17 1 9.7823 9.5351 0.0089 18 6 11.7121 8.6226 0.0076 19 7 12.3831 7.4916 0.0067 20 14 12.6269 10.2513 0.0098 21 1 12.8686 10.6814 1.4105 22 1 13.9267 10.0900 -0.6898 23 1 11.8124 11.2775 -0.6894 24 6 6.0116 3.7608 0.0017 25 7 5.3960 2.6066 0.0012 26 6 4.0597 2.5215 0.0016 27 6 3.4210 1.2722 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.1974 2.3064 0.0001 32 1 1.2617 4.4958 -0.0083 33 1 3.3376 5.8668 0.0023 34 1 7.8656 5.4425 0.0025 35 1 7.8182 8.1235 -0.8845 36 1 7.8176 8.1215 0.8955 37 1 9.4408 5.5425 1.2515 38 1 11.0485 6.3060 1.2523 39 1 9.7045 7.0601 2.1435 40 1 9.7045 7.0657 -2.1350 41 1 11.0485 6.3094 -1.2458 42 1 9.4408 5.5458 -1.2470 43 1 13.3531 7.5032 0.0067 44 1 7.0913 3.7829 0.0021 45 1 4.0054 0.3639 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909883197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:22 Heat of formation + Delta-G solvation = -41.086298 kcal Electronic energy + Delta-G solvation = -26791.651095 eV Core-core repulsion = 22966.609166 eV Total energy + Delta-G solvation = -3825.041929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.13871 -40.89889 -39.97646 -38.12959 -37.04679 -35.06239 -34.45031 -32.84544 -31.41305 -31.16371 -28.27692 -27.54688 -27.48003 -26.90781 -25.21367 -24.71991 -23.25409 -22.07280 -20.64468 -19.80736 -19.28360 -18.48666 -17.82325 -17.49090 -16.87920 -16.76903 -16.52096 -16.37049 -16.34128 -15.97714 -15.26703 -15.25066 -14.87002 -14.77105 -14.45517 -14.36789 -14.18728 -13.93065 -13.35099 -13.20190 -13.16645 -13.08511 -13.01461 -12.68034 -12.58562 -12.24172 -12.17953 -12.11866 -12.09387 -11.47310 -11.42104 -11.27655 -11.11024 -10.70161 -10.53258 -10.38452 -10.01722 -9.73088 -9.08293 -8.00386 -6.15894 -0.83800 -0.49874 0.77209 1.43845 1.45015 1.46881 1.54772 2.15136 2.17391 2.19920 2.49270 2.98836 3.23327 3.23655 3.48906 3.59970 3.66296 3.74468 3.80495 4.05668 4.16063 4.35936 4.41103 4.43837 4.52933 4.53149 4.69079 4.73583 4.78302 4.78848 4.97423 5.00264 5.06832 5.07111 5.12485 5.18506 5.21289 5.29282 5.34600 5.50077 5.56204 5.68947 5.69518 6.16574 6.22861 6.28777 6.44794 6.56000 6.73943 6.88094 7.17882 7.51608 8.98497 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.037005 B = 0.002130 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.467018 B =13140.787607 C =13700.886912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.328 6.328 3 C 0.164 3.836 4 C -0.189 4.189 5 C -0.035 4.035 6 C -0.156 4.156 7 C 0.031 3.969 8 C -0.218 4.218 9 C 0.560 3.440 10 O -0.582 6.582 11 N -0.704 5.704 12 C 0.147 3.853 13 C 0.050 3.950 14 C -0.123 4.123 15 C -0.123 4.123 16 C -0.526 4.526 17 H 0.047 0.953 18 C 0.027 3.973 19 N -0.899 5.899 20 Si 0.945 3.055 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.275 1.275 24 C 0.174 3.826 25 N -0.502 5.502 26 C 0.163 3.837 27 C -0.177 4.177 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.174 0.826 32 H 0.172 0.828 33 H 0.164 0.836 34 H 0.407 0.593 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.063 0.937 42 H 0.036 0.964 43 H 0.260 0.740 44 H 0.175 0.825 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.856 -14.940 -0.029 29.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.241 6.241 3 C 0.116 3.884 4 C -0.207 4.207 5 C -0.053 4.053 6 C -0.159 4.159 7 C 0.005 3.995 8 C -0.224 4.224 9 C 0.347 3.653 10 O -0.464 6.464 11 N -0.355 5.355 12 C 0.024 3.976 13 C 0.049 3.951 14 C -0.181 4.181 15 C -0.180 4.180 16 C -0.564 4.564 17 H 0.065 0.935 18 C -0.173 4.173 19 N -0.537 5.537 20 Si 0.772 3.228 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.200 1.200 24 C 0.001 3.999 25 N -0.211 5.211 26 C 0.043 3.957 27 C -0.197 4.197 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.138 0.862 31 H 0.192 0.808 32 H 0.189 0.811 33 H 0.181 0.819 34 H 0.245 0.755 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.192 0.808 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.607 -15.327 -0.033 28.990 hybrid contribution 0.757 1.541 0.014 1.717 sum -23.850 -13.786 -0.020 27.548 Atomic orbital electron populations 1.23514 0.75522 1.06135 1.03035 1.86087 1.24248 1.26249 1.87529 1.19083 0.91504 0.85408 0.92410 1.21473 1.02314 0.90927 1.05939 1.21273 0.91495 0.99624 0.92952 1.18951 0.96236 0.92825 1.07847 1.22113 0.92893 0.98212 0.86307 1.20799 0.95608 0.93907 1.12069 1.18281 0.82389 0.88527 0.76062 1.90720 1.68173 1.34751 1.52737 1.46060 1.05591 1.10878 1.72933 1.21358 0.92965 0.83782 0.99506 1.18386 0.88343 0.94900 0.93481 1.21696 1.02624 0.96877 0.96857 1.21692 1.02609 0.96886 0.96854 1.21250 0.91678 0.92382 1.51106 0.93520 1.25462 0.98229 0.98819 0.94805 1.69911 1.07078 1.26065 1.50691 0.85757 0.78053 0.81048 0.77921 1.20580 1.20984 1.20020 1.23268 1.01077 0.86062 0.89526 1.67988 1.09703 1.27996 1.15390 1.18829 0.89171 0.92975 0.94772 1.20050 0.92215 0.96709 1.10692 0.90819 0.90823 0.86249 0.80848 0.81086 0.81867 0.75461 0.93737 0.93719 0.94522 0.91830 0.96138 0.96115 0.91848 0.94512 0.93077 0.80790 0.84368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.80 113.37 1.11 1.17 16 2 O -0.33 -4.84 10.47 -91.09 -0.95 -5.80 16 3 C 0.16 2.78 6.67 22.55 0.15 2.93 16 4 C -0.19 -2.23 8.94 22.14 0.20 -2.03 16 5 C -0.03 -0.48 9.75 22.32 0.22 -0.27 16 6 C -0.16 -3.38 5.74 -21.27 -0.12 -3.50 16 7 C 0.03 0.74 9.45 23.01 0.22 0.96 16 8 C -0.22 -6.14 5.89 -20.00 -0.12 -6.26 16 9 C 0.56 19.27 7.77 86.74 0.67 19.94 16 10 O -0.58 -23.69 16.38 -3.92 -0.06 -23.75 16 11 N -0.70 -24.42 4.91 -466.14 -2.29 -26.71 16 12 C 0.15 6.18 4.50 86.38 0.39 6.57 16 13 C 0.05 2.27 0.50 -52.92 -0.03 2.24 16 14 C -0.12 -5.43 8.08 71.99 0.58 -4.85 16 15 C -0.12 -5.42 8.08 71.98 0.58 -4.84 16 16 C -0.53 -27.54 8.01 25.60 0.21 -27.34 16 17 H 0.05 2.49 7.74 -2.91 -0.02 2.46 16 18 C 0.03 1.40 5.15 84.65 0.44 1.83 16 19 N -0.90 -47.87 9.35 21.45 0.20 -47.67 16 20 Si 0.95 42.56 29.54 68.60 2.03 44.59 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 C 0.17 4.62 10.68 85.42 0.91 5.54 16 25 N -0.50 -13.98 10.30 -187.74 -1.93 -15.91 16 26 C 0.16 4.11 6.60 40.23 0.27 4.38 16 27 C -0.18 -3.93 9.93 22.65 0.22 -3.71 16 28 H 0.07 0.17 7.64 -2.38 -0.02 0.15 16 29 H 0.07 0.16 7.63 -2.39 -0.02 0.15 16 30 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.17 0.72 6.23 -2.91 -0.02 0.70 16 32 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 33 H 0.16 3.46 7.70 -2.91 -0.02 3.44 16 34 H 0.41 12.39 4.19 -92.71 -0.39 12.01 16 35 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.04 1.35 6.86 -2.39 -0.02 1.34 16 38 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 39 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 3.13 6.07 -2.38 -0.01 3.11 16 42 H 0.04 1.35 6.86 -2.39 -0.02 1.34 16 43 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 44 H 0.18 3.97 6.37 -2.91 -0.02 3.95 16 45 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -66.79 366.32 3.52 -63.27 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.64 Total: 19.20 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 5.90 Total: -7.22 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -4.02 Total: -90.29 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -1.02 Total: -29.55 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -66.79 3.52 -63.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909883197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.180 kcal (2) G-P(sol) polarization free energy of solvation -66.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds