Wall clock time and date at job start Tue Mar 31 2020 14:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47018 * 2 1 4 4 C 1.38148 * 126.31410 * 84.93960 * 3 2 1 5 5 C 1.47266 * 126.42160 * 0.02562 * 4 3 2 6 6 O 1.21523 * 120.00357 * 0.30400 * 5 4 3 7 7 O 1.34758 * 119.99744 * 180.30821 * 5 4 3 8 8 C 1.45204 * 116.99911 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46982 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.46907 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.47338 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99400 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00372 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99700 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00027 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47300 * 59.99758 * 15 13 11 17 17 H 1.48501 * 109.47099 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47193 * 299.99825 * 15 13 11 19 19 C 1.41390 * 107.15592 * 180.25313 * 4 3 2 20 20 N 1.30462 * 108.05727 * 359.74322 * 19 4 3 21 21 N 1.34502 * 126.31687 * 264.74413 * 3 2 1 22 22 C 1.40152 * 125.75962 * 0.02562 * 21 3 2 23 23 C 1.38846 * 120.06723 * 135.21022 * 22 21 3 24 24 C 1.38121 * 119.93036 * 180.02562 * 23 22 21 25 25 C 1.38276 * 120.07160 * 359.97438 * 24 23 22 26 26 C 1.38284 * 120.13150 * 359.97438 * 25 24 23 27 27 C 1.38119 * 120.06984 * 0.02562 * 26 25 24 28 28 H 1.08991 * 109.46907 * 184.09431 * 1 2 3 29 29 H 1.09004 * 109.46710 * 304.09281 * 1 2 3 30 30 H 1.09002 * 109.46965 * 64.08924 * 1 2 3 31 31 H 1.08997 * 109.46998 * 240.00100 * 2 1 3 32 32 H 1.09000 * 109.47122 * 120.00468 * 2 1 3 33 33 H 1.09002 * 109.46542 * 299.99164 * 8 7 5 34 34 H 1.08993 * 109.47500 * 59.99554 * 8 7 5 35 35 H 1.09000 * 109.47241 * 299.99860 * 9 8 7 36 36 H 1.09003 * 109.47311 * 60.00140 * 9 8 7 37 37 H 1.09000 * 109.47313 * 299.99553 * 10 9 8 38 38 H 1.08993 * 109.47316 * 59.99955 * 10 9 8 39 39 H 0.96994 * 119.99748 * 180.02562 * 14 13 11 40 40 H 1.07997 * 125.97343 * 179.77841 * 19 4 3 41 41 H 1.07996 * 120.03828 * 0.04191 * 23 22 21 42 42 H 1.08007 * 119.96449 * 180.02562 * 24 23 22 43 43 H 1.07999 * 119.93233 * 179.72198 * 25 24 23 44 44 H 1.08006 * 119.96508 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.03474 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2125 2.2249 1.1088 5 6 1.9503 1.8540 2.5097 6 8 1.5387 0.7424 2.7772 7 8 2.1669 2.7474 3.4950 8 6 1.8874 2.3129 4.8520 9 6 2.1915 3.4533 5.8256 10 6 1.8964 2.9956 7.2554 11 6 2.1953 4.1191 8.2143 12 1 2.5597 5.0649 7.8412 13 6 2.0046 3.9394 9.5679 14 7 1.5613 2.7875 10.0222 15 14 2.3757 5.3317 10.7565 16 1 1.5255 6.5038 10.4270 17 1 2.0892 4.8875 12.1443 18 1 3.8070 5.7110 10.6432 19 6 2.6906 3.4724 0.6461 20 7 2.7928 3.4097 -0.6530 21 7 2.3915 2.1388 -1.0792 22 6 2.3624 1.6916 -2.4071 23 6 1.8466 2.5078 -3.4049 24 6 1.8188 2.0640 -4.7126 25 6 2.3045 0.8086 -5.0287 26 6 2.8198 -0.0062 -4.0373 27 6 2.8503 0.4318 -2.7278 28 1 -0.3633 -1.0250 0.0734 29 1 -0.3633 0.5761 0.8511 30 1 -0.3633 0.4491 -0.9244 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.8369 2.0342 4.9351 34 1 2.5118 1.4529 5.0940 35 1 3.2420 3.7318 5.7423 36 1 1.5673 4.3136 5.5838 37 1 0.8458 2.7176 7.3384 38 1 2.5202 2.1352 7.4975 39 1 1.4268 2.6611 10.9744 40 1 2.9300 4.3276 1.2607 41 1 1.4677 3.4887 -3.1589 42 1 1.4181 2.6987 -5.4892 43 1 2.2776 0.4621 -6.0512 44 1 3.1988 -0.9862 -4.2873 45 1 3.2533 -0.2048 -1.9540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914630967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:27 Heat of formation + Delta-G solvation = 1.235072 kcal Electronic energy + Delta-G solvation = -26429.831596 eV Core-core repulsion = 22606.624859 eV Total energy + Delta-G solvation = -3823.206736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.14359 -39.88345 -39.29124 -36.32827 -34.66128 -33.91135 -33.64983 -31.67328 -31.56933 -29.74985 -29.65962 -27.07893 -25.05369 -23.68223 -23.41972 -23.08534 -22.29774 -20.91363 -20.34728 -19.68685 -18.23538 -17.12724 -16.73334 -16.42923 -16.29808 -15.94808 -15.81966 -15.23240 -14.80978 -14.56691 -14.51576 -14.44610 -14.01036 -13.80915 -13.49428 -13.32734 -13.13029 -12.67556 -12.22978 -12.16789 -12.07374 -12.02906 -11.79726 -11.75811 -11.45036 -10.99579 -10.91752 -10.64522 -10.58107 -10.42153 -10.30495 -10.24449 -9.67143 -9.58085 -9.47487 -9.30176 -9.14634 -8.76508 -8.35847 -6.00927 -4.03773 0.35258 0.74632 1.29301 1.84066 1.90324 2.99806 3.16292 3.20813 3.34445 3.38605 3.41456 4.04981 4.20136 4.30728 4.45235 4.46398 4.49455 4.58457 4.77533 4.90600 4.92013 4.95984 5.02851 5.12702 5.34413 5.34951 5.40254 5.43931 5.61098 5.64720 5.69580 5.73201 5.74464 5.82886 5.89012 5.97251 6.06897 6.14055 6.17248 6.58590 6.59334 6.67969 6.90846 7.03532 7.20359 7.63392 7.74997 7.97502 8.07459 8.39061 9.02287 9.60253 11.10469 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.032984 B = 0.001908 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.685327 B =14674.057515 C =15242.848947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 C 0.172 3.828 4 C -0.270 4.270 5 C 0.540 3.460 6 O -0.518 6.518 7 O -0.353 6.353 8 C 0.071 3.929 9 C -0.109 4.109 10 C 0.024 3.976 11 C -0.521 4.521 12 H 0.057 0.943 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.112 3.888 20 N -0.294 5.294 21 N -0.318 5.318 22 C 0.146 3.854 23 C -0.102 4.102 24 C -0.103 4.103 25 C -0.116 4.116 26 C -0.101 4.101 27 C -0.124 4.124 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 40 H 0.205 0.795 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.408 -6.183 -32.722 33.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 C 0.042 3.958 4 C -0.282 4.282 5 C 0.385 3.615 6 O -0.408 6.408 7 O -0.269 6.269 8 C -0.001 4.001 9 C -0.147 4.147 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.075 0.925 13 C -0.145 4.145 14 N -0.534 5.534 15 Si 0.723 3.277 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.076 4.076 20 N -0.110 5.110 21 N -0.091 5.091 22 C 0.056 3.944 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.134 4.134 26 C -0.119 4.119 27 C -0.144 4.144 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.130 0.870 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.222 0.778 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.148 0.852 44 H 0.153 0.847 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.569 -5.955 -33.569 34.098 hybrid contribution 0.004 0.352 1.648 1.685 sum 0.573 -5.603 -31.921 32.414 Atomic orbital electron populations 1.21626 0.92866 1.02996 1.02229 1.20696 0.97808 0.87988 1.05120 1.21643 0.93277 0.95240 0.85605 1.19180 1.21128 0.96807 0.91119 1.19778 0.74179 0.82616 0.84966 1.90795 1.43544 1.22010 1.84464 1.86528 1.78842 1.43718 1.17859 1.23484 1.01186 0.99693 0.75782 1.21764 1.01609 0.95929 0.95377 1.19048 0.97356 0.97073 0.87833 1.21146 1.44364 0.99032 0.91427 0.92476 1.25027 0.95215 0.95753 0.98482 1.69956 1.45823 1.23457 1.14134 0.86606 0.78848 0.82331 0.79911 1.20205 1.21292 1.20200 1.24395 0.94226 0.97673 0.91327 1.77401 1.23130 0.96982 1.13469 1.45559 1.49102 1.10406 1.04016 1.17430 1.01705 0.94734 0.80549 1.21102 0.98643 1.00216 0.92234 1.21119 0.99119 0.96336 0.95588 1.21326 0.98051 0.94164 0.99858 1.21057 0.99005 1.00262 0.91603 1.21188 1.00202 0.95084 0.97884 0.91120 0.91477 0.93074 0.89998 0.86960 0.91513 0.91516 0.92131 0.92137 0.96229 0.96228 0.92873 0.77820 0.84804 0.84852 0.85154 0.84734 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.89 37.16 0.37 -0.96 16 2 C -0.08 -0.77 5.42 -27.88 -0.15 -0.92 16 3 C 0.17 2.08 6.08 -81.45 -0.50 1.58 16 4 C -0.27 -3.74 6.13 -105.06 -0.64 -4.38 16 5 C 0.54 8.75 7.95 34.40 0.27 9.02 16 6 O -0.52 -9.11 14.72 -19.28 -0.28 -9.40 16 7 O -0.35 -6.07 10.07 -40.65 -0.41 -6.48 16 8 C 0.07 1.33 5.48 37.16 0.20 1.54 16 9 C -0.11 -2.28 5.53 -26.73 -0.15 -2.43 16 10 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 11 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 12 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 15 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.11 1.41 11.87 -16.94 -0.20 1.21 16 20 N -0.29 -3.78 12.35 30.88 0.38 -3.40 16 21 N -0.32 -3.72 3.66 -6.50 -0.02 -3.75 16 22 C 0.15 1.39 6.13 -83.60 -0.51 0.88 16 23 C -0.10 -0.84 9.86 -39.40 -0.39 -1.23 16 24 C -0.10 -0.60 10.04 -39.61 -0.40 -1.00 16 25 C -0.12 -0.57 10.04 -39.55 -0.40 -0.97 16 26 C -0.10 -0.54 10.04 -39.61 -0.40 -0.94 16 27 C -0.12 -0.92 8.28 -39.40 -0.33 -1.25 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.61 4.93 -51.93 -0.26 0.36 16 32 H 0.11 1.24 6.78 -51.93 -0.35 0.89 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.21 2.07 8.06 -52.49 -0.42 1.65 16 41 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.13 0.48 8.06 -52.48 -0.42 0.05 16 43 H 0.13 0.33 8.06 -52.49 -0.42 -0.09 16 44 H 0.13 0.41 8.06 -52.48 -0.42 -0.02 16 45 H 0.13 0.89 6.49 -52.49 -0.34 0.55 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -33.11 385.01 -8.99 -42.10 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -6.41 Total: -2.48 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -3.76 Total: -12.90 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 1.09 Total: -33.31 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.69 Total: -15.87 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.11 -8.99 -42.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914630967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.337 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds