Wall clock time and date at job start Tue Mar 31 2020 14:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47018 * 2 1 4 4 C 1.38148 * 126.31410 * 84.93960 * 3 2 1 5 5 C 1.47266 * 126.42160 * 0.02562 * 4 3 2 6 6 O 1.21523 * 120.00357 * 0.30400 * 5 4 3 7 7 O 1.34758 * 119.99744 * 180.30821 * 5 4 3 8 8 C 1.45204 * 116.99911 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46982 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.46907 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.47338 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99400 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00372 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99700 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00027 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47300 * 59.99758 * 15 13 11 17 17 H 1.48501 * 109.47099 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47193 * 299.99825 * 15 13 11 19 19 C 1.41390 * 107.15592 * 180.25313 * 4 3 2 20 20 N 1.30462 * 108.05727 * 359.74322 * 19 4 3 21 21 N 1.34502 * 126.31687 * 264.74413 * 3 2 1 22 22 C 1.40152 * 125.75962 * 0.02562 * 21 3 2 23 23 C 1.38846 * 120.06723 * 135.21022 * 22 21 3 24 24 C 1.38121 * 119.93036 * 180.02562 * 23 22 21 25 25 C 1.38276 * 120.07160 * 359.97438 * 24 23 22 26 26 C 1.38284 * 120.13150 * 359.97438 * 25 24 23 27 27 C 1.38119 * 120.06984 * 0.02562 * 26 25 24 28 28 H 1.08991 * 109.46907 * 184.09431 * 1 2 3 29 29 H 1.09004 * 109.46710 * 304.09281 * 1 2 3 30 30 H 1.09002 * 109.46965 * 64.08924 * 1 2 3 31 31 H 1.08997 * 109.46998 * 240.00100 * 2 1 3 32 32 H 1.09000 * 109.47122 * 120.00468 * 2 1 3 33 33 H 1.09002 * 109.46542 * 299.99164 * 8 7 5 34 34 H 1.08993 * 109.47500 * 59.99554 * 8 7 5 35 35 H 1.09000 * 109.47241 * 299.99860 * 9 8 7 36 36 H 1.09003 * 109.47311 * 60.00140 * 9 8 7 37 37 H 1.09000 * 109.47313 * 299.99553 * 10 9 8 38 38 H 1.08993 * 109.47316 * 59.99955 * 10 9 8 39 39 H 0.96994 * 119.99748 * 180.02562 * 14 13 11 40 40 H 1.07997 * 125.97343 * 179.77841 * 19 4 3 41 41 H 1.07996 * 120.03828 * 0.04191 * 23 22 21 42 42 H 1.08007 * 119.96449 * 180.02562 * 24 23 22 43 43 H 1.07999 * 119.93233 * 179.72198 * 25 24 23 44 44 H 1.08006 * 119.96508 * 180.02562 * 26 25 24 45 45 H 1.08000 * 120.03474 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2125 2.2249 1.1088 5 6 1.9503 1.8540 2.5097 6 8 1.5387 0.7424 2.7772 7 8 2.1669 2.7474 3.4950 8 6 1.8874 2.3129 4.8520 9 6 2.1915 3.4533 5.8256 10 6 1.8964 2.9956 7.2554 11 6 2.1953 4.1191 8.2143 12 1 2.5597 5.0649 7.8412 13 6 2.0046 3.9394 9.5679 14 7 1.5613 2.7875 10.0222 15 14 2.3757 5.3317 10.7565 16 1 1.5255 6.5038 10.4270 17 1 2.0892 4.8875 12.1443 18 1 3.8070 5.7110 10.6432 19 6 2.6906 3.4724 0.6461 20 7 2.7928 3.4097 -0.6530 21 7 2.3915 2.1388 -1.0792 22 6 2.3624 1.6916 -2.4071 23 6 1.8466 2.5078 -3.4049 24 6 1.8188 2.0640 -4.7126 25 6 2.3045 0.8086 -5.0287 26 6 2.8198 -0.0062 -4.0373 27 6 2.8503 0.4318 -2.7278 28 1 -0.3633 -1.0250 0.0734 29 1 -0.3633 0.5761 0.8511 30 1 -0.3633 0.4491 -0.9244 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.8369 2.0342 4.9351 34 1 2.5118 1.4529 5.0940 35 1 3.2420 3.7318 5.7423 36 1 1.5673 4.3136 5.5838 37 1 0.8458 2.7176 7.3384 38 1 2.5202 2.1352 7.4975 39 1 1.4268 2.6611 10.9744 40 1 2.9300 4.3276 1.2607 41 1 1.4677 3.4887 -3.1589 42 1 1.4181 2.6987 -5.4892 43 1 2.2776 0.4621 -6.0512 44 1 3.1988 -0.9862 -4.2873 45 1 3.2533 -0.2048 -1.9540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914630967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:26 Heat of formation + Delta-G solvation = -15.147471 kcal Electronic energy + Delta-G solvation = -26430.541996 eV Core-core repulsion = 22606.624859 eV Total energy + Delta-G solvation = -3823.917137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.05441 -41.10547 -39.94714 -37.72915 -35.93335 -35.42718 -34.43757 -33.63564 -32.05538 -30.76675 -30.36393 -28.90681 -26.16348 -24.98660 -24.31266 -23.86900 -23.34812 -22.13101 -21.78540 -20.73507 -19.21110 -18.56320 -17.85317 -17.65098 -17.53140 -17.09124 -16.83373 -16.48327 -15.99710 -15.68472 -15.46254 -15.16780 -15.11326 -14.72837 -14.50083 -14.32315 -14.09035 -13.89918 -13.76259 -13.71799 -13.44459 -12.84060 -12.78782 -12.69581 -12.51674 -12.38959 -12.32175 -12.27459 -12.03228 -11.79410 -11.70033 -11.37971 -11.36517 -11.21553 -11.17664 -10.54984 -10.20131 -10.06329 -9.51700 -8.20030 -6.31349 -0.33358 0.27105 0.40329 0.91532 0.99457 1.42270 1.45585 1.53346 1.76000 2.02514 2.42794 2.62832 3.13641 3.22206 3.45273 3.63349 3.79897 3.82314 3.87991 4.04846 4.10836 4.16619 4.17230 4.20302 4.35577 4.37249 4.42004 4.44804 4.48284 4.67097 4.83423 4.84477 4.90558 4.95409 5.01788 5.10581 5.11331 5.18142 5.29281 5.31165 5.44484 5.45448 5.54503 5.64414 5.66650 5.82124 5.98235 6.21150 6.26966 6.76162 6.84515 7.37794 8.91895 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.032984 B = 0.001908 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.685327 B =14674.057515 C =15242.848947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.075 4.075 3 C 0.179 3.821 4 C -0.299 4.299 5 C 0.540 3.460 6 O -0.537 6.537 7 O -0.353 6.353 8 C 0.082 3.918 9 C -0.094 4.094 10 C 0.026 3.974 11 C -0.544 4.544 12 H 0.065 0.935 13 C -0.001 4.001 14 N -0.933 5.933 15 Si 0.969 3.031 16 H -0.266 1.266 17 H -0.284 1.284 18 H -0.266 1.266 19 C 0.112 3.888 20 N -0.311 5.311 21 N -0.311 5.311 22 C 0.109 3.891 23 C -0.117 4.117 24 C -0.103 4.103 25 C -0.106 4.106 26 C -0.097 4.097 27 C -0.130 4.130 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.066 0.934 37 H -0.003 1.003 38 H -0.003 1.003 39 H 0.264 0.736 40 H 0.221 0.779 41 H 0.123 0.877 42 H 0.156 0.844 43 H 0.162 0.838 44 H 0.164 0.836 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.908 -6.139 -35.360 35.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 C 0.047 3.953 4 C -0.311 4.311 5 C 0.387 3.613 6 O -0.428 6.428 7 O -0.269 6.269 8 C 0.008 3.992 9 C -0.131 4.131 10 C -0.011 4.011 11 C -0.582 4.582 12 H 0.083 0.917 13 C -0.199 4.199 14 N -0.573 5.573 15 Si 0.793 3.207 16 H -0.191 1.191 17 H -0.209 1.209 18 H -0.191 1.191 19 C -0.076 4.076 20 N -0.127 5.127 21 N -0.083 5.083 22 C 0.020 3.980 23 C -0.137 4.137 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.115 4.115 27 C -0.150 4.150 28 H 0.107 0.893 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.073 0.927 40 H 0.238 0.762 41 H 0.141 0.859 42 H 0.174 0.826 43 H 0.180 0.820 44 H 0.181 0.819 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.078 -5.897 -36.253 36.745 hybrid contribution -0.159 0.257 2.248 2.268 sum 0.918 -5.640 -34.005 34.482 Atomic orbital electron populations 1.21592 0.92472 1.03758 1.01427 1.20772 0.98013 0.86804 1.05797 1.21947 0.92058 0.95905 0.85351 1.19133 1.23673 0.98142 0.90140 1.20125 0.73562 0.82167 0.85456 1.90778 1.44648 1.22683 1.84739 1.86503 1.79129 1.44011 1.17248 1.23130 1.00904 0.98548 0.76575 1.21460 1.02059 0.96599 0.93031 1.18932 0.95433 0.95967 0.90785 1.21604 1.44359 0.99859 0.92352 0.91700 1.26003 0.94852 0.98490 1.00568 1.70094 1.46828 1.25682 1.14658 0.85448 0.79145 0.78941 0.77194 1.19117 1.20907 1.19100 1.24663 0.93746 0.97773 0.91409 1.77353 1.23728 0.98138 1.13513 1.45746 1.47874 1.09790 1.04883 1.17830 1.04346 0.96203 0.79670 1.21179 0.99355 0.99881 0.93236 1.21432 0.98570 0.97170 0.94916 1.21759 0.96042 0.93331 1.01305 1.21445 0.98015 1.01437 0.90607 1.21351 1.00220 0.94265 0.99164 0.89284 0.94077 0.92276 0.87277 0.88216 0.91838 0.91787 0.91456 0.91488 0.98432 0.98412 0.92711 0.76225 0.85914 0.82599 0.81998 0.81889 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.89 71.98 0.71 -1.79 16 2 C -0.08 -1.46 5.42 29.85 0.16 -1.30 16 3 C 0.18 4.35 6.08 42.13 0.26 4.61 16 4 C -0.30 -8.45 6.13 -20.15 -0.12 -8.57 16 5 C 0.54 17.98 7.95 70.20 0.56 18.54 16 6 O -0.54 -19.49 14.72 19.76 0.29 -19.20 16 7 O -0.35 -12.29 10.07 -56.69 -0.57 -12.86 16 8 C 0.08 3.13 5.48 71.98 0.39 3.52 16 9 C -0.09 -3.97 5.53 30.59 0.17 -3.80 16 10 C 0.03 1.39 4.97 29.85 0.15 1.53 16 11 C -0.54 -31.08 9.11 25.60 0.23 -30.85 16 12 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 13 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 14 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 15 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 16 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 19 C 0.11 2.85 11.87 85.67 1.02 3.87 16 20 N -0.31 -8.09 12.35 -56.20 -0.69 -8.78 16 21 N -0.31 -7.26 3.66 -174.47 -0.64 -7.90 16 22 C 0.11 1.98 6.13 38.10 0.23 2.21 16 23 C -0.12 -1.82 9.86 22.39 0.22 -1.60 16 24 C -0.10 -0.93 10.04 22.25 0.22 -0.71 16 25 C -0.11 -0.65 10.04 22.29 0.22 -0.43 16 26 C -0.10 -0.71 10.04 22.25 0.22 -0.49 16 27 C -0.13 -1.68 8.28 22.39 0.19 -1.50 16 28 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.04 0.97 8.11 -2.38 -0.02 0.95 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 1.47 4.93 -2.39 -0.01 1.46 16 32 H 0.10 2.22 6.78 -2.39 -0.02 2.21 16 33 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.22 4.50 8.06 -2.91 -0.02 4.48 16 41 H 0.12 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 43 H 0.16 0.00 8.06 -2.91 -0.02 -0.03 16 44 H 0.16 0.26 8.06 -2.91 -0.02 0.24 16 45 H 0.14 1.59 6.49 -2.91 -0.02 1.57 16 Total: -1.00 -72.74 385.01 6.99 -65.75 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.99 Total: 9.71 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 5.30 Total: -16.33 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -1.05 Total: -73.50 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.28 Total: -32.06 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -72.74 6.99 -65.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914630967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.603 kcal (2) G-P(sol) polarization free energy of solvation -72.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds