Wall clock time and date at job start Tue Mar 31 2020 16:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47444 * 2 1 4 4 C 1.53004 * 109.47179 * 120.00219 * 2 1 3 5 5 N 1.46498 * 109.47146 * 174.99952 * 4 2 1 6 6 C 1.34777 * 119.99785 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00256 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99835 * 180.02562 * 6 5 4 9 9 C 1.53070 * 109.44585 * 59.79079 * 8 6 5 10 10 C 1.53195 * 109.29524 * 181.23845 * 9 8 6 11 11 N 1.46919 * 108.89273 * 305.57804 * 10 9 8 12 12 C 1.34783 * 120.63144 * 233.55709 * 11 10 9 13 13 O 1.21274 * 119.99655 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99922 * 179.97438 * 12 11 10 15 15 S 1.81002 * 109.46922 * 180.02562 * 14 12 11 16 16 C 1.76204 * 99.99932 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00106 * 359.97438 * 16 15 14 18 18 C 1.38799 * 119.99685 * 179.97438 * 16 15 14 19 19 N 1.31632 * 120.00277 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99781 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46948 * 90.00349 * 20 18 16 22 22 H 1.48500 * 109.47056 * 210.00208 * 20 18 16 23 23 H 1.48492 * 109.47222 * 330.00387 * 20 18 16 24 24 C 1.46928 * 118.73982 * 53.53793 * 11 10 9 25 25 C 1.53039 * 109.46083 * 179.97438 * 8 6 5 26 26 H 1.09004 * 109.47116 * 299.99623 * 1 2 3 27 27 H 1.08997 * 109.47376 * 60.00013 * 1 2 3 28 28 H 1.09004 * 109.47266 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47212 * 239.99454 * 2 1 3 30 30 H 1.09004 * 109.46656 * 60.00095 * 3 2 1 31 31 H 1.08997 * 109.47581 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46824 * 300.00326 * 3 2 1 33 33 H 1.08998 * 109.47532 * 54.99502 * 4 2 1 34 34 H 1.08999 * 109.47050 * 294.99938 * 4 2 1 35 35 H 0.96993 * 120.00104 * 0.02562 * 5 4 2 36 36 H 1.09007 * 109.45494 * 299.96338 * 8 6 5 37 37 H 1.08997 * 109.38860 * 61.36032 * 9 8 6 38 38 H 1.09003 * 109.62046 * 301.25375 * 9 8 6 39 39 H 1.09002 * 109.58720 * 185.71834 * 10 9 8 40 40 H 1.08996 * 109.58651 * 65.43731 * 10 9 8 41 41 H 1.09001 * 109.47385 * 300.00399 * 14 12 11 42 42 H 1.08997 * 109.47457 * 60.00250 * 14 12 11 43 43 H 0.96997 * 119.99912 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.58787 * 66.18123 * 24 11 10 45 45 H 1.09007 * 109.58600 * 186.46436 * 24 11 10 46 46 H 1.09002 * 109.49876 * 58.67167 * 25 8 6 47 47 H 1.09005 * 109.52615 * 298.59417 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1729 -1.4293 2.1907 7 8 3.5699 -1.8843 3.1394 8 6 5.6749 -1.5369 2.1306 9 6 6.2840 -0.1343 2.0620 10 6 7.8089 -0.2486 1.9699 11 7 8.2933 -1.0656 3.0907 12 6 9.2559 -0.6023 3.9126 13 8 9.7303 0.4989 3.7305 14 6 9.7418 -1.4521 5.0583 15 16 11.0254 -0.5591 5.9698 16 6 11.4013 -1.7491 7.2138 17 1 10.8779 -2.6935 7.2334 18 6 12.3701 -1.4725 8.1685 19 7 13.0077 -0.3212 8.1449 20 14 12.7682 -2.7338 9.4877 21 1 13.8520 -3.6279 9.0067 22 1 13.2126 -2.0365 10.7212 23 1 11.5566 -3.5396 9.7838 24 6 7.7082 -2.3972 3.2990 25 6 6.1847 -2.2586 3.3802 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8899 33 1 1.6054 -1.7198 1.2952 34 1 1.7516 -0.1584 2.1370 35 1 3.9824 -0.4622 0.4320 36 1 5.9633 -2.0998 1.2428 37 1 6.0143 0.4216 2.9600 38 1 5.9044 0.3870 1.1831 39 1 8.2536 0.7452 2.0230 40 1 8.0835 -0.7219 1.0272 41 1 8.9089 -1.6724 5.7260 42 1 10.1528 -2.3842 4.6705 43 1 13.6845 -0.1279 8.8123 44 1 7.9725 -3.0470 2.4648 45 1 8.0885 -2.8221 4.2280 46 1 5.7323 -3.2485 3.4386 47 1 5.9180 -1.6838 4.2671 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915262477.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:33 Heat of formation + Delta-G solvation = -96.194938 kcal Electronic energy + Delta-G solvation = -25553.021383 eV Core-core repulsion = 21861.033716 eV Total energy + Delta-G solvation = -3691.987667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.63530 -39.46087 -37.37385 -36.66650 -33.82998 -32.89886 -32.41256 -31.46710 -29.12810 -27.71739 -27.17615 -25.52964 -25.19798 -23.28884 -21.83404 -21.01491 -20.23873 -19.06942 -17.78196 -17.47092 -16.58537 -16.53765 -15.82042 -15.63039 -15.32847 -15.09900 -14.78868 -14.52195 -14.27599 -13.98795 -13.88931 -13.82508 -13.48494 -13.11075 -12.98066 -12.76475 -12.69109 -12.52229 -12.35752 -12.11119 -11.79871 -11.66895 -11.47992 -11.42360 -11.26913 -11.05073 -11.01699 -10.98015 -10.86648 -10.73460 -9.98390 -9.78823 -9.41752 -9.35340 -9.05125 -8.55023 -8.21200 -6.48595 -6.20144 -3.90646 2.37644 2.81215 2.94357 3.06689 3.23726 3.27528 3.31902 3.60792 4.19437 4.21627 4.30765 4.33585 4.44862 4.47522 4.50715 4.84709 4.93439 4.98372 4.99665 5.09662 5.11430 5.15042 5.16104 5.25374 5.28579 5.33645 5.39332 5.42337 5.47912 5.57012 5.57693 5.62144 5.70934 5.72039 5.77323 5.83723 5.90385 5.92343 6.05908 6.13430 6.15322 6.62796 7.14189 7.54268 7.61399 7.93745 8.36843 8.55778 9.25242 10.87270 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026869 B = 0.002082 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.849327 B =13445.578801 C =13939.731594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.150 4.150 4 C 0.122 3.878 5 N -0.732 5.732 6 C 0.518 3.482 7 O -0.536 6.536 8 C -0.106 4.106 9 C -0.124 4.124 10 C 0.115 3.885 11 N -0.621 5.621 12 C 0.536 3.464 13 O -0.517 6.517 14 C -0.151 4.151 15 S -0.062 6.062 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.108 3.892 25 C -0.115 4.115 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.400 0.600 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.733 -2.026 -20.199 30.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.208 4.208 4 C -0.002 4.002 5 N -0.385 5.385 6 C 0.304 3.696 7 O -0.412 6.412 8 C -0.127 4.127 9 C -0.163 4.163 10 C -0.008 4.008 11 N -0.358 5.358 12 C 0.324 3.676 13 O -0.392 6.392 14 C -0.302 4.302 15 S 0.165 5.835 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.015 4.015 25 C -0.154 4.154 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.234 0.766 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.113 0.887 46 H 0.101 0.899 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.332 -0.597 -19.675 29.769 hybrid contribution -0.199 -1.966 0.622 2.072 sum -22.531 -2.563 -19.053 29.618 Atomic orbital electron populations 1.21767 0.93975 1.02236 1.02378 1.21361 0.96824 0.96784 0.97756 1.21882 1.01109 0.95454 1.02314 1.21435 0.79873 1.00681 0.98178 1.46054 1.07746 1.60575 1.24135 1.20728 0.89969 0.77002 0.81867 1.90717 1.70359 1.47166 1.32972 1.21357 0.90892 0.98910 1.01535 1.21937 0.96185 0.94881 1.03269 1.21462 0.92513 0.97832 0.89002 1.48122 1.39575 1.17669 1.30427 1.20340 0.78099 0.86864 0.82255 1.90684 1.55995 1.20704 1.71786 1.23562 1.05066 1.03017 0.98551 1.85387 1.42256 1.23873 1.31984 1.22863 1.25987 1.04133 1.15302 0.90916 1.24990 0.95073 0.96037 0.97480 1.70019 1.23701 1.21768 1.34809 0.86171 0.78728 0.80461 0.80168 1.20280 1.20763 1.19670 1.21759 0.92572 0.84109 1.03088 1.21756 0.94831 1.01672 0.97104 0.92239 0.92087 0.92328 0.90557 0.92275 0.92543 0.92290 0.91536 0.91425 0.76558 0.88302 0.90673 0.90587 0.88465 0.91624 0.89170 0.89218 0.92204 0.91350 0.88734 0.89910 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.19 37.16 0.34 -0.26 16 2 C -0.11 -0.48 2.96 -90.62 -0.27 -0.75 16 3 C -0.15 -0.66 9.07 37.16 0.34 -0.32 16 4 C 0.12 0.83 5.06 -4.04 -0.02 0.80 16 5 N -0.73 -5.04 5.17 -60.29 -0.31 -5.36 16 6 C 0.52 5.15 7.16 -10.99 -0.08 5.07 16 7 O -0.54 -7.61 15.98 5.56 0.09 -7.52 16 8 C -0.11 -0.89 2.48 -91.72 -0.23 -1.12 16 9 C -0.12 -1.06 5.27 -26.59 -0.14 -1.20 16 10 C 0.11 1.25 6.43 -3.71 -0.02 1.23 16 11 N -0.62 -8.57 2.97 -172.77 -0.51 -9.08 16 12 C 0.54 10.17 7.72 -10.98 -0.08 10.08 16 13 O -0.52 -11.74 15.27 5.56 0.08 -11.66 16 14 C -0.15 -3.10 4.50 36.00 0.16 -2.94 16 15 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 16 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 20 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 24 C 0.11 1.17 6.34 -3.71 -0.02 1.15 16 25 C -0.11 -1.19 4.65 -26.61 -0.12 -1.31 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.23 7.18 -51.93 -0.37 -0.14 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.40 1.75 7.05 -40.82 -0.29 1.46 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.43 7.53 -51.93 -0.39 0.04 16 39 H 0.10 1.25 7.00 -51.93 -0.36 0.89 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.73 7.69 -51.91 -0.40 1.33 16 42 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.09 1.08 5.93 -51.92 -0.31 0.77 16 46 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 47 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 LS Contribution 390.23 15.07 5.88 5.88 Total: -1.00 -36.41 390.23 -9.22 -45.63 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -7.99 Total: -2.41 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 0.05 Total: -2.55 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: -0.09 Total: -39.99 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.17 Total: -19.18 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.41 -9.22 -45.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915262477.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.562 kcal (2) G-P(sol) polarization free energy of solvation -36.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds