Wall clock time and date at job start Tue Mar 31 2020 16:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47444 * 2 1 4 4 C 1.53004 * 109.47179 * 120.00219 * 2 1 3 5 5 N 1.46498 * 109.47146 * 174.99952 * 4 2 1 6 6 C 1.34777 * 119.99785 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00256 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99835 * 180.02562 * 6 5 4 9 9 C 1.53070 * 109.44585 * 59.79079 * 8 6 5 10 10 C 1.53195 * 109.29524 * 181.23845 * 9 8 6 11 11 N 1.46919 * 108.89273 * 305.57804 * 10 9 8 12 12 C 1.34783 * 120.63144 * 233.55709 * 11 10 9 13 13 O 1.21274 * 119.99655 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99922 * 179.97438 * 12 11 10 15 15 S 1.81002 * 109.46922 * 180.02562 * 14 12 11 16 16 C 1.76204 * 99.99932 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00106 * 359.97438 * 16 15 14 18 18 C 1.38799 * 119.99685 * 179.97438 * 16 15 14 19 19 N 1.31632 * 120.00277 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99781 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46948 * 90.00349 * 20 18 16 22 22 H 1.48500 * 109.47056 * 210.00208 * 20 18 16 23 23 H 1.48492 * 109.47222 * 330.00387 * 20 18 16 24 24 C 1.46928 * 118.73982 * 53.53793 * 11 10 9 25 25 C 1.53039 * 109.46083 * 179.97438 * 8 6 5 26 26 H 1.09004 * 109.47116 * 299.99623 * 1 2 3 27 27 H 1.08997 * 109.47376 * 60.00013 * 1 2 3 28 28 H 1.09004 * 109.47266 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47212 * 239.99454 * 2 1 3 30 30 H 1.09004 * 109.46656 * 60.00095 * 3 2 1 31 31 H 1.08997 * 109.47581 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46824 * 300.00326 * 3 2 1 33 33 H 1.08998 * 109.47532 * 54.99502 * 4 2 1 34 34 H 1.08999 * 109.47050 * 294.99938 * 4 2 1 35 35 H 0.96993 * 120.00104 * 0.02562 * 5 4 2 36 36 H 1.09007 * 109.45494 * 299.96338 * 8 6 5 37 37 H 1.08997 * 109.38860 * 61.36032 * 9 8 6 38 38 H 1.09003 * 109.62046 * 301.25375 * 9 8 6 39 39 H 1.09002 * 109.58720 * 185.71834 * 10 9 8 40 40 H 1.08996 * 109.58651 * 65.43731 * 10 9 8 41 41 H 1.09001 * 109.47385 * 300.00399 * 14 12 11 42 42 H 1.08997 * 109.47457 * 60.00250 * 14 12 11 43 43 H 0.96997 * 119.99912 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.58787 * 66.18123 * 24 11 10 45 45 H 1.09007 * 109.58600 * 186.46436 * 24 11 10 46 46 H 1.09002 * 109.49876 * 58.67167 * 25 8 6 47 47 H 1.09005 * 109.52615 * 298.59417 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1729 -1.4293 2.1907 7 8 3.5699 -1.8843 3.1394 8 6 5.6749 -1.5369 2.1306 9 6 6.2840 -0.1343 2.0620 10 6 7.8089 -0.2486 1.9699 11 7 8.2933 -1.0656 3.0907 12 6 9.2559 -0.6023 3.9126 13 8 9.7303 0.4989 3.7305 14 6 9.7418 -1.4521 5.0583 15 16 11.0254 -0.5591 5.9698 16 6 11.4013 -1.7491 7.2138 17 1 10.8779 -2.6935 7.2334 18 6 12.3701 -1.4725 8.1685 19 7 13.0077 -0.3212 8.1449 20 14 12.7682 -2.7338 9.4877 21 1 13.8520 -3.6279 9.0067 22 1 13.2126 -2.0365 10.7212 23 1 11.5566 -3.5396 9.7838 24 6 7.7082 -2.3972 3.2990 25 6 6.1847 -2.2586 3.3802 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9562 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8899 33 1 1.6054 -1.7198 1.2952 34 1 1.7516 -0.1584 2.1370 35 1 3.9824 -0.4622 0.4320 36 1 5.9633 -2.0998 1.2428 37 1 6.0143 0.4216 2.9600 38 1 5.9044 0.3870 1.1831 39 1 8.2536 0.7452 2.0230 40 1 8.0835 -0.7219 1.0272 41 1 8.9089 -1.6724 5.7260 42 1 10.1528 -2.3842 4.6705 43 1 13.6845 -0.1279 8.8123 44 1 7.9725 -3.0470 2.4648 45 1 8.0885 -2.8221 4.2280 46 1 5.7323 -3.2485 3.4386 47 1 5.9180 -1.6838 4.2671 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915262477.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:32 Heat of formation + Delta-G solvation = -121.062483 kcal Electronic energy + Delta-G solvation = -25554.099721 eV Core-core repulsion = 21861.033716 eV Total energy + Delta-G solvation = -3693.066005 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.54875 -40.59722 -38.25599 -37.50246 -34.63812 -34.58275 -33.79464 -32.41525 -30.55502 -28.06728 -27.98671 -27.61465 -26.05788 -24.17680 -22.78729 -21.55880 -21.01173 -20.29912 -19.50900 -18.47846 -17.77763 -17.24230 -16.91160 -16.85510 -16.67103 -16.43994 -15.89523 -15.70875 -15.18475 -15.04126 -14.89639 -14.53287 -14.44691 -14.27493 -14.22211 -13.75647 -13.43871 -13.37465 -13.23180 -13.16040 -12.97975 -12.89950 -12.88859 -12.61686 -12.26382 -12.06019 -11.86391 -11.78524 -11.74342 -11.66951 -11.62810 -11.14513 -10.89328 -10.79688 -10.27039 -10.09712 -9.68951 -8.67459 -8.34968 -6.13209 1.25644 1.42099 1.45513 1.55898 1.56610 1.62144 2.10217 2.22048 2.27228 2.99034 3.24743 3.54863 3.61963 3.73148 3.81411 3.86378 3.95206 4.03652 4.12187 4.23134 4.24993 4.32218 4.42958 4.45644 4.59008 4.66161 4.67200 4.72115 4.76775 4.80089 4.84993 4.87590 4.97264 4.99845 5.04249 5.10034 5.22762 5.28518 5.35663 5.40395 5.41453 5.51816 5.58770 6.19416 6.27051 6.54451 7.06227 7.14536 7.25301 8.74265 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026869 B = 0.002082 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.849327 B =13445.578801 C =13939.731594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.151 4.151 4 C 0.122 3.878 5 N -0.715 5.715 6 C 0.516 3.484 7 O -0.586 6.586 8 C -0.098 4.098 9 C -0.114 4.114 10 C 0.110 3.890 11 N -0.608 5.608 12 C 0.533 3.467 13 O -0.566 6.566 14 C -0.126 4.126 15 S -0.151 6.151 16 C -0.546 4.546 17 H 0.082 0.918 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.998 3.002 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.259 1.259 24 C 0.105 3.895 25 C -0.111 4.111 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.416 0.584 36 H 0.137 0.863 37 H 0.046 0.954 38 H 0.114 0.886 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.881 -4.008 -22.362 32.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.208 4.208 4 C -0.002 4.002 5 N -0.368 5.368 6 C 0.303 3.697 7 O -0.466 6.466 8 C -0.119 4.119 9 C -0.152 4.152 10 C -0.012 4.012 11 N -0.343 5.343 12 C 0.321 3.679 13 O -0.444 6.444 14 C -0.277 4.277 15 S 0.076 5.924 16 C -0.694 4.694 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.820 3.180 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.183 1.183 24 C -0.017 4.017 25 C -0.150 4.150 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.253 0.747 36 H 0.155 0.845 37 H 0.065 0.935 38 H 0.132 0.868 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.123 0.877 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -23.524 -2.588 -21.913 32.253 hybrid contribution 0.012 -1.349 1.174 1.788 sum -23.513 -3.937 -20.739 31.598 Atomic orbital electron populations 1.21784 0.93801 1.02344 1.02550 1.21308 0.96908 0.96651 0.96873 1.21896 1.01469 0.95237 1.02227 1.21450 0.79743 1.00257 0.98775 1.45943 1.07897 1.59173 1.23804 1.20990 0.90568 0.76535 0.81580 1.90706 1.71348 1.49549 1.34983 1.21343 0.89660 0.98883 1.01993 1.21872 0.94460 0.95121 1.03767 1.21743 0.93671 0.96686 0.89085 1.48145 1.37562 1.18886 1.29670 1.20075 0.79230 0.86046 0.82560 1.90667 1.58217 1.22470 1.73076 1.23391 1.02806 1.02839 0.98685 1.85538 1.45923 1.27038 1.33882 1.23195 1.26356 1.04294 1.15577 0.89996 1.26126 0.94673 0.98290 1.00032 1.70182 1.24449 1.24096 1.35970 0.84957 0.78984 0.77493 0.76574 1.19122 1.20283 1.18327 1.22017 0.92600 0.82785 1.04344 1.21673 0.94371 1.01926 0.97000 0.92928 0.91078 0.92288 0.89065 0.93448 0.91970 0.91344 0.92393 0.93298 0.74665 0.84510 0.93469 0.86786 0.90762 0.87918 0.88043 0.87227 0.91981 0.87666 0.89505 0.89105 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.19 71.98 0.66 -0.33 16 2 C -0.10 -0.67 2.96 -10.79 -0.03 -0.70 16 3 C -0.15 -1.00 9.07 71.98 0.65 -0.35 16 4 C 0.12 1.50 5.06 86.38 0.44 1.94 16 5 N -0.72 -8.14 5.17 -463.06 -2.39 -10.54 16 6 C 0.52 9.31 7.16 87.66 0.63 9.94 16 7 O -0.59 -16.48 15.98 -3.03 -0.05 -16.53 16 8 C -0.10 -1.34 2.48 -11.50 -0.03 -1.37 16 9 C -0.11 -1.64 5.27 30.68 0.16 -1.48 16 10 C 0.11 2.13 6.43 86.36 0.56 2.68 16 11 N -0.61 -15.79 2.97 -818.91 -2.44 -18.22 16 12 C 0.53 20.28 7.72 87.66 0.68 20.96 16 13 O -0.57 -26.50 15.27 -3.01 -0.05 -26.55 16 14 C -0.13 -5.18 4.50 71.24 0.32 -4.86 16 15 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 16 C -0.55 -31.68 9.50 67.95 0.65 -31.03 16 17 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 18 C 0.01 0.78 5.49 84.86 0.47 1.25 16 19 N -0.91 -56.48 13.22 21.65 0.29 -56.19 16 20 Si 1.00 44.14 29.55 68.60 2.03 46.17 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 24 C 0.10 1.99 6.34 86.36 0.55 2.54 16 25 C -0.11 -2.08 4.65 30.67 0.14 -1.94 16 26 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.33 7.18 -2.39 -0.02 0.32 16 32 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.42 2.04 7.05 -92.71 -0.65 1.38 16 36 H 0.14 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.11 0.82 7.53 -2.39 -0.02 0.80 16 39 H 0.07 1.85 7.00 -2.39 -0.02 1.84 16 40 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.10 3.90 7.69 -2.39 -0.02 3.88 16 42 H 0.11 4.02 7.94 -2.40 -0.02 4.00 16 43 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 44 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.09 1.81 5.93 -2.38 -0.01 1.80 16 46 H 0.09 1.60 8.07 -2.39 -0.02 1.58 16 47 H 0.05 1.17 8.13 -2.38 -0.02 1.15 16 Total: -1.00 -84.26 390.23 2.36 -81.90 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.30 Total: 12.42 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 5.83 Total: -2.75 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -4.54 Total: -84.95 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -0.09 Total: -43.08 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -84.26 2.36 -81.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915262477.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.160 kcal (2) G-P(sol) polarization free energy of solvation -84.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds