Wall clock time and date at job start Tue Mar 31 2020 14:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.46861 * 2 1 4 4 N 1.31355 * 119.64227 * 88.98778 * 3 2 1 5 5 C 1.33760 * 119.76574 * 179.97438 * 4 3 2 6 6 C 1.40720 * 120.86197 * 180.02562 * 5 4 3 7 7 C 1.35714 * 120.08729 * 179.67885 * 6 5 4 8 8 C 1.40664 * 120.83858 * 0.60873 * 7 6 5 9 9 C 1.47750 * 119.75819 * 179.68935 * 8 7 6 10 10 O 1.21464 * 119.99723 * 179.73159 * 9 8 7 11 11 O 1.34714 * 119.99877 * 359.71949 * 9 8 7 12 12 C 1.45206 * 116.99658 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46931 * 180.02562 * 12 11 9 14 14 C 1.50693 * 109.46812 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00484 * 0.02562 * 14 13 12 16 16 C 1.37886 * 119.99728 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99868 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99755 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47404 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46687 * 120.00036 * 18 16 14 21 21 H 1.48502 * 109.47039 * 239.99867 * 18 16 14 22 22 C 1.38468 * 120.48272 * 359.40887 * 8 7 6 23 23 C 1.40445 * 119.48509 * 0.27357 * 22 8 7 24 24 N 1.33795 * 120.92491 * 180.02562 * 23 22 8 25 25 C 1.31298 * 119.73408 * 179.97438 * 24 23 22 26 26 C 1.50700 * 119.66327 * 179.97438 * 25 24 23 27 27 C 1.52994 * 109.47439 * 89.32090 * 26 25 24 28 28 H 1.08999 * 109.47472 * 303.95144 * 1 2 3 29 29 H 1.08998 * 109.47677 * 63.95793 * 1 2 3 30 30 H 1.09005 * 109.46972 * 183.95637 * 1 2 3 31 31 H 1.08997 * 109.47175 * 240.00777 * 2 1 3 32 32 H 1.08998 * 109.47472 * 120.00126 * 2 1 3 33 33 H 1.07995 * 119.95660 * 0.02656 * 6 5 4 34 34 H 1.08008 * 119.57919 * 180.29415 * 7 6 5 35 35 H 1.08996 * 109.46819 * 60.00536 * 12 11 9 36 36 H 1.09002 * 109.47109 * 300.00117 * 12 11 9 37 37 H 1.08998 * 109.47414 * 300.00389 * 13 12 11 38 38 H 1.09005 * 109.46562 * 60.00224 * 13 12 11 39 39 H 0.96997 * 119.99637 * 179.97438 * 17 16 14 40 40 H 1.07999 * 120.25596 * 180.29520 * 22 8 7 41 41 H 1.09001 * 109.46954 * 209.32347 * 26 25 24 42 42 H 1.09002 * 109.47079 * 329.32238 * 26 25 24 43 43 H 1.09002 * 109.47315 * 175.23525 * 27 26 25 44 44 H 1.09002 * 109.47505 * 295.24077 * 27 26 25 45 45 H 1.08996 * 109.47121 * 55.23812 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2298 2.0401 1.1415 5 6 2.6760 3.3011 1.1444 6 6 2.8961 3.9861 2.3537 7 6 3.3554 5.2631 2.3384 8 6 3.6058 5.9248 1.1226 9 6 4.0989 7.3176 1.1338 10 8 4.3212 7.8915 0.0866 11 8 4.3018 7.9509 2.3053 12 6 4.7867 9.3181 2.2402 13 6 4.9560 9.8672 3.6582 14 6 5.4598 11.2858 3.5906 15 1 5.6408 11.7495 2.6322 16 6 5.6898 11.9918 4.7525 17 7 5.4699 11.4269 5.9196 18 14 6.3151 13.7500 4.6687 19 1 6.4811 14.1493 3.2481 20 1 5.3377 14.6547 5.3257 21 1 7.6229 13.8441 5.3659 22 6 3.3989 5.2786 -0.0844 23 6 2.9302 3.9547 -0.0883 24 7 2.7208 3.3028 -1.2377 25 6 2.2827 2.0653 -1.2141 26 6 2.0469 1.3327 -2.5097 27 6 3.3316 0.6177 -2.9325 28 1 -0.3634 0.5739 0.8524 29 1 -0.3634 0.4512 -0.9233 30 1 -0.3633 -1.0253 0.0709 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.7047 3.4932 3.2953 34 1 3.5259 5.7796 3.2715 35 1 4.0697 9.9323 1.6956 36 1 5.7475 9.3387 1.7258 37 1 3.9955 9.8465 4.1730 38 1 5.6733 9.2528 4.2025 39 1 5.6321 11.9234 6.7369 40 1 3.5969 5.7886 -1.0156 41 1 1.2513 0.6001 -2.3733 42 1 1.7564 2.0449 -3.2822 43 1 3.1385 0.0197 -3.8232 44 1 4.1034 1.3558 -3.1507 45 1 3.6685 -0.0321 -2.1248 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916615595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:15 Heat of formation + Delta-G solvation = -45.570427 kcal Electronic energy + Delta-G solvation = -26266.705516 eV Core-core repulsion = 22441.469141 eV Total energy + Delta-G solvation = -3825.236375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.90913 -40.09983 -38.08548 -36.19797 -35.60852 -34.86110 -33.37167 -32.77527 -30.72843 -30.40218 -29.82138 -26.48173 -25.46283 -25.00161 -23.32514 -22.57666 -22.35363 -21.32478 -20.76192 -18.81410 -18.56289 -17.23429 -16.46022 -16.24628 -16.06347 -15.87986 -15.71359 -14.96555 -14.76546 -14.57573 -14.51680 -14.22983 -13.99151 -13.57751 -13.41848 -13.20694 -13.05510 -12.66361 -12.41829 -12.37087 -12.03231 -11.91993 -11.79269 -11.74090 -11.62931 -11.52073 -11.44052 -11.26564 -11.07650 -10.80933 -10.74478 -10.39343 -9.71176 -9.68575 -9.40309 -9.31707 -9.09357 -8.84158 -8.47073 -6.13009 -4.17278 -0.25781 0.13326 1.50736 2.05686 2.88729 2.98301 3.26288 3.33847 3.38681 3.53649 3.65058 3.70570 3.85921 4.21759 4.30840 4.36795 4.62167 4.67283 4.72242 4.77315 4.78272 4.85108 4.87099 4.95601 5.10265 5.23369 5.23890 5.36488 5.39336 5.46530 5.47834 5.57797 5.63453 5.70839 5.75108 5.85841 5.92697 6.01250 6.03035 6.04573 6.32052 6.58562 6.83229 6.95925 7.40121 7.51647 7.58447 7.82776 8.06288 8.20919 8.88385 9.47326 10.98498 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.031169 B = 0.001956 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.112956 B =14313.177818 C =15002.045805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C 0.122 3.878 4 N -0.427 5.427 5 C 0.099 3.901 6 C -0.094 4.094 7 C -0.052 4.052 8 C -0.093 4.093 9 C 0.500 3.500 10 O -0.507 6.507 11 O -0.349 6.349 12 C 0.075 3.925 13 C 0.024 3.976 14 C -0.526 4.526 15 H 0.060 0.940 16 C 0.060 3.940 17 N -0.889 5.889 18 Si 0.900 3.100 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.013 4.013 23 C 0.065 3.935 24 N -0.413 5.413 25 C 0.107 3.893 26 C -0.076 4.076 27 C -0.147 4.147 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.148 0.852 34 H 0.157 0.843 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.263 0.737 40 H 0.156 0.844 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.255 -26.833 -13.688 31.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.034 4.034 4 N -0.140 5.140 5 C -0.024 4.024 6 C -0.113 4.113 7 C -0.072 4.072 8 C -0.096 4.096 9 C 0.344 3.656 10 O -0.397 6.397 11 O -0.265 6.265 12 C 0.003 3.997 13 C -0.013 4.013 14 C -0.565 4.565 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.032 4.032 23 C -0.058 4.058 24 N -0.127 5.127 25 C -0.050 4.050 26 C -0.114 4.114 27 C -0.205 4.205 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.165 0.835 34 H 0.174 0.826 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.173 0.827 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.082 -26.343 -13.635 31.022 hybrid contribution 0.437 1.230 0.058 1.306 sum -8.645 -25.114 -13.578 29.829 Atomic orbital electron populations 1.21740 0.93467 1.02697 1.02593 1.20621 0.96978 0.89509 1.04473 1.22476 0.94274 0.97861 0.88818 1.68565 1.09613 1.07282 1.28576 1.19707 0.97409 0.91032 0.94278 1.20712 0.99768 0.94127 0.96740 1.21316 0.93578 0.93841 0.98502 1.19322 1.03707 0.92493 0.94122 1.20910 0.75226 0.86507 0.82919 1.90818 1.48039 1.67368 1.33481 1.86566 1.76269 1.31760 1.31868 1.23741 0.97924 0.74804 1.03230 1.19190 0.98601 0.95498 0.88004 1.21009 1.45259 0.97177 0.93019 0.92152 1.24987 0.95302 0.98641 0.95253 1.69978 1.48211 1.37216 0.97362 0.86411 0.78515 0.84069 0.78298 1.19576 1.20826 1.20819 1.21208 0.92329 0.91018 0.98665 1.19311 1.01628 0.95463 0.89421 1.68470 1.08434 1.07577 1.28174 1.22387 0.95134 0.90948 0.96501 1.20594 0.99489 0.98990 0.92358 1.21743 0.96729 1.00506 1.01555 0.92046 0.92342 0.91302 0.89147 0.89263 0.83454 0.82564 0.92030 0.92033 0.95244 0.95244 0.92740 0.82676 0.89216 0.89296 0.91340 0.91986 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.79 37.16 0.36 -0.36 16 2 C -0.08 -0.44 5.54 -27.88 -0.15 -0.60 16 3 C 0.12 1.16 6.05 -82.24 -0.50 0.66 16 4 N -0.43 -5.02 10.37 -7.00 -0.07 -5.09 16 5 C 0.10 1.27 6.59 -84.72 -0.56 0.71 16 6 C -0.09 -1.09 9.95 -39.55 -0.39 -1.48 16 7 C -0.05 -0.66 9.51 -39.57 -0.38 -1.03 16 8 C -0.09 -1.36 5.87 -105.01 -0.62 -1.97 16 9 C 0.50 8.95 7.89 34.62 0.27 9.22 16 10 O -0.51 -10.14 16.09 -19.24 -0.31 -10.45 16 11 O -0.35 -6.82 9.43 -40.53 -0.38 -7.20 16 12 C 0.08 1.65 5.41 37.16 0.20 1.85 16 13 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 14 C -0.53 -14.68 9.11 -34.44 -0.31 -15.00 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 18 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.01 -0.18 9.56 -38.67 -0.37 -0.54 16 23 C 0.07 0.87 6.58 -84.81 -0.56 0.31 16 24 N -0.41 -5.15 10.37 -7.07 -0.07 -5.22 16 25 C 0.11 1.05 6.05 -82.27 -0.50 0.55 16 26 C -0.08 -0.46 5.54 -27.89 -0.15 -0.61 16 27 C -0.15 -0.78 9.72 37.15 0.36 -0.41 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.26 7.43 -51.93 -0.39 -0.12 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.33 5.90 -51.93 -0.31 0.02 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.16 1.84 7.57 -52.48 -0.40 1.44 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.16 2.13 7.61 -52.49 -0.40 1.73 16 41 H 0.09 0.34 5.82 -51.93 -0.30 0.04 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.28 7.58 -51.93 -0.39 -0.11 16 LS Contribution 381.80 15.07 5.75 5.75 Total: -1.00 -32.51 381.80 -9.28 -41.79 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -6.38 Total: -3.87 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -3.54 Total: -6.63 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.59 Total: -35.69 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.69 Total: -17.65 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.51 -9.28 -41.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916615595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.783 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds