Wall clock time and date at job start Tue Mar 31 2020 14:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.46861 * 2 1 4 4 N 1.31355 * 119.64227 * 88.98778 * 3 2 1 5 5 C 1.33760 * 119.76574 * 179.97438 * 4 3 2 6 6 C 1.40720 * 120.86197 * 180.02562 * 5 4 3 7 7 C 1.35714 * 120.08729 * 179.67885 * 6 5 4 8 8 C 1.40664 * 120.83858 * 0.60873 * 7 6 5 9 9 C 1.47750 * 119.75819 * 179.68935 * 8 7 6 10 10 O 1.21464 * 119.99723 * 179.73159 * 9 8 7 11 11 O 1.34714 * 119.99877 * 359.71949 * 9 8 7 12 12 C 1.45206 * 116.99658 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46931 * 180.02562 * 12 11 9 14 14 C 1.50693 * 109.46812 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00484 * 0.02562 * 14 13 12 16 16 C 1.37886 * 119.99728 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99868 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99755 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47404 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46687 * 120.00036 * 18 16 14 21 21 H 1.48502 * 109.47039 * 239.99867 * 18 16 14 22 22 C 1.38468 * 120.48272 * 359.40887 * 8 7 6 23 23 C 1.40445 * 119.48509 * 0.27357 * 22 8 7 24 24 N 1.33795 * 120.92491 * 180.02562 * 23 22 8 25 25 C 1.31298 * 119.73408 * 179.97438 * 24 23 22 26 26 C 1.50700 * 119.66327 * 179.97438 * 25 24 23 27 27 C 1.52994 * 109.47439 * 89.32090 * 26 25 24 28 28 H 1.08999 * 109.47472 * 303.95144 * 1 2 3 29 29 H 1.08998 * 109.47677 * 63.95793 * 1 2 3 30 30 H 1.09005 * 109.46972 * 183.95637 * 1 2 3 31 31 H 1.08997 * 109.47175 * 240.00777 * 2 1 3 32 32 H 1.08998 * 109.47472 * 120.00126 * 2 1 3 33 33 H 1.07995 * 119.95660 * 0.02656 * 6 5 4 34 34 H 1.08008 * 119.57919 * 180.29415 * 7 6 5 35 35 H 1.08996 * 109.46819 * 60.00536 * 12 11 9 36 36 H 1.09002 * 109.47109 * 300.00117 * 12 11 9 37 37 H 1.08998 * 109.47414 * 300.00389 * 13 12 11 38 38 H 1.09005 * 109.46562 * 60.00224 * 13 12 11 39 39 H 0.96997 * 119.99637 * 179.97438 * 17 16 14 40 40 H 1.07999 * 120.25596 * 180.29520 * 22 8 7 41 41 H 1.09001 * 109.46954 * 209.32347 * 26 25 24 42 42 H 1.09002 * 109.47079 * 329.32238 * 26 25 24 43 43 H 1.09002 * 109.47315 * 175.23525 * 27 26 25 44 44 H 1.09002 * 109.47505 * 295.24077 * 27 26 25 45 45 H 1.08996 * 109.47121 * 55.23812 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2298 2.0401 1.1415 5 6 2.6760 3.3011 1.1444 6 6 2.8961 3.9861 2.3537 7 6 3.3554 5.2631 2.3384 8 6 3.6058 5.9248 1.1226 9 6 4.0989 7.3176 1.1338 10 8 4.3212 7.8915 0.0866 11 8 4.3018 7.9509 2.3053 12 6 4.7867 9.3181 2.2402 13 6 4.9560 9.8672 3.6582 14 6 5.4598 11.2858 3.5906 15 1 5.6408 11.7495 2.6322 16 6 5.6898 11.9918 4.7525 17 7 5.4699 11.4269 5.9196 18 14 6.3151 13.7500 4.6687 19 1 6.4811 14.1493 3.2481 20 1 5.3377 14.6547 5.3257 21 1 7.6229 13.8441 5.3659 22 6 3.3989 5.2786 -0.0844 23 6 2.9302 3.9547 -0.0883 24 7 2.7208 3.3028 -1.2377 25 6 2.2827 2.0653 -1.2141 26 6 2.0469 1.3327 -2.5097 27 6 3.3316 0.6177 -2.9325 28 1 -0.3634 0.5739 0.8524 29 1 -0.3634 0.4512 -0.9233 30 1 -0.3633 -1.0253 0.0709 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.7047 3.4932 3.2953 34 1 3.5259 5.7796 3.2715 35 1 4.0697 9.9323 1.6956 36 1 5.7475 9.3387 1.7258 37 1 3.9955 9.8465 4.1730 38 1 5.6733 9.2528 4.2025 39 1 5.6321 11.9234 6.7369 40 1 3.5969 5.7886 -1.0156 41 1 1.2513 0.6001 -2.3733 42 1 1.7564 2.0449 -3.2822 43 1 3.1385 0.0197 -3.8232 44 1 4.1034 1.3558 -3.1507 45 1 3.6685 -0.0321 -2.1248 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916615595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:14 Heat of formation + Delta-G solvation = -63.577647 kcal Electronic energy + Delta-G solvation = -26267.486368 eV Core-core repulsion = 22441.469141 eV Total energy + Delta-G solvation = -3826.017227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.80229 -41.55324 -39.08712 -37.76140 -36.43704 -35.62981 -35.41797 -33.40846 -32.44934 -31.43125 -30.84843 -27.64369 -26.66104 -26.15654 -24.42133 -23.46005 -23.08061 -22.83809 -22.18310 -19.92820 -19.55151 -18.67195 -18.13470 -17.63712 -17.53456 -17.05826 -16.56992 -16.51154 -15.72161 -15.41730 -15.29002 -15.20780 -15.02222 -14.81276 -14.46817 -14.39072 -14.02164 -13.78050 -13.68368 -13.23078 -13.18697 -12.99113 -12.84627 -12.66487 -12.64167 -12.58566 -12.51815 -12.46262 -12.27190 -12.01324 -11.95165 -11.88106 -11.60496 -11.53682 -11.40146 -10.62514 -10.24814 -10.00887 -9.82405 -8.28097 -6.40832 -1.24339 -0.77836 0.49240 0.99797 1.38778 1.41036 1.47212 1.56428 1.81059 2.38529 2.73735 2.74036 2.83030 2.99169 3.06565 3.38434 3.48445 3.56315 3.75360 3.90684 4.01488 4.19451 4.19945 4.23748 4.31994 4.35900 4.40074 4.42522 4.56030 4.63997 4.67857 4.79803 4.83596 4.95226 5.00457 5.01510 5.08401 5.11139 5.17638 5.18377 5.33351 5.35358 5.44121 5.45823 5.48763 5.71817 6.05281 6.10219 6.52679 6.54052 6.72770 7.28759 8.84594 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.031169 B = 0.001956 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.112956 B =14313.177818 C =15002.045805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.076 4.076 3 C 0.130 3.870 4 N -0.443 5.443 5 C 0.088 3.912 6 C -0.083 4.083 7 C -0.056 4.056 8 C -0.106 4.106 9 C 0.504 3.496 10 O -0.532 6.532 11 O -0.351 6.351 12 C 0.090 3.910 13 C 0.031 3.969 14 C -0.550 4.550 15 H 0.065 0.935 16 C 0.006 3.994 17 N -0.925 5.925 18 Si 0.973 3.027 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.011 4.011 23 C 0.046 3.954 24 N -0.439 5.439 25 C 0.113 3.887 26 C -0.075 4.075 27 C -0.145 4.145 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.171 0.829 34 H 0.161 0.839 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.268 0.732 40 H 0.149 0.851 41 H 0.122 0.878 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.040 0.960 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.022 -29.070 -14.849 34.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.027 4.027 4 N -0.157 5.157 5 C -0.035 4.035 6 C -0.102 4.102 7 C -0.076 4.076 8 C -0.109 4.109 9 C 0.350 3.650 10 O -0.424 6.424 11 O -0.267 6.267 12 C 0.017 3.983 13 C -0.006 4.006 14 C -0.588 4.588 15 H 0.083 0.917 16 C -0.193 4.193 17 N -0.564 5.564 18 Si 0.797 3.203 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.030 4.030 23 C -0.076 4.076 24 N -0.153 5.153 25 C -0.045 4.045 26 C -0.113 4.113 27 C -0.203 4.203 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.138 0.862 32 H 0.111 0.889 33 H 0.188 0.812 34 H 0.179 0.821 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.077 0.923 40 H 0.167 0.833 41 H 0.140 0.860 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.059 0.941 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.847 -28.574 -14.792 33.649 hybrid contribution 0.577 1.643 0.310 1.769 sum -9.271 -26.931 -14.482 31.952 Atomic orbital electron populations 1.21752 0.92529 1.03913 1.02121 1.20836 0.97523 0.86927 1.06146 1.23247 0.92076 0.99298 0.88117 1.68659 1.10543 1.06818 1.29706 1.19906 0.97543 0.91743 0.94318 1.20909 0.98384 0.93481 0.97423 1.21307 0.94190 0.94337 0.97794 1.19102 1.05714 0.90735 0.95369 1.21422 0.74305 0.87425 0.81850 1.90795 1.49370 1.68211 1.34003 1.86546 1.76537 1.30612 1.33028 1.23290 0.98205 0.76164 1.00675 1.18993 0.96788 0.95042 0.89792 1.21397 1.45630 0.98251 0.93489 0.91708 1.25949 0.95263 1.03315 0.94757 1.70091 1.48985 1.39171 0.98163 0.85281 0.78050 0.78302 0.78698 1.18701 1.20071 1.20062 1.21152 0.92280 0.91510 0.98083 1.19338 1.02539 0.95372 0.90302 1.68506 1.09824 1.09040 1.27901 1.23150 0.92888 0.90127 0.98371 1.20804 1.00911 0.99352 0.90271 1.21750 0.95534 1.00175 1.02860 0.94000 0.91627 0.89031 0.86207 0.88905 0.81197 0.82096 0.91872 0.91879 0.97200 0.97202 0.92325 0.83313 0.86027 0.89413 0.88906 0.94083 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.79 71.98 0.70 -0.24 16 2 C -0.08 -0.61 5.54 29.85 0.17 -0.44 16 3 C 0.13 2.20 6.05 42.99 0.26 2.46 16 4 N -0.44 -9.87 10.37 -176.05 -1.83 -11.70 16 5 C 0.09 2.21 6.59 40.34 0.27 2.48 16 6 C -0.08 -1.89 9.95 22.29 0.22 -1.67 16 7 C -0.06 -1.44 9.51 22.28 0.21 -1.23 16 8 C -0.11 -3.22 5.87 -20.12 -0.12 -3.34 16 9 C 0.50 18.75 7.89 70.34 0.56 19.30 16 10 O -0.53 -22.09 16.09 19.95 0.32 -21.77 16 11 O -0.35 -14.25 9.43 -56.24 -0.53 -14.78 16 12 C 0.09 4.05 5.41 71.98 0.39 4.44 16 13 C 0.03 1.66 5.35 29.85 0.16 1.82 16 14 C -0.55 -31.18 9.11 25.60 0.23 -30.95 16 15 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 16 C 0.01 0.36 5.46 84.66 0.46 0.82 16 17 N -0.93 -55.16 13.29 21.45 0.28 -54.88 16 18 Si 0.97 43.75 29.54 68.60 2.03 45.77 16 19 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 22 C -0.01 -0.31 9.56 22.86 0.22 -0.09 16 23 C 0.05 1.26 6.58 40.27 0.27 1.53 16 24 N -0.44 -10.83 10.37 -176.28 -1.83 -12.66 16 25 C 0.11 2.01 6.05 43.00 0.26 2.27 16 26 C -0.08 -0.69 5.54 29.85 0.17 -0.53 16 27 C -0.15 -1.11 9.72 71.98 0.70 -0.41 16 28 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.34 7.43 -2.39 -0.02 0.33 16 30 H 0.09 0.23 8.14 -2.38 -0.02 0.21 16 31 H 0.12 0.29 5.90 -2.39 -0.01 0.27 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.16 3.89 7.57 -2.91 -0.02 3.87 16 35 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.15 4.36 7.61 -2.91 -0.02 4.34 16 41 H 0.12 0.36 5.82 -2.39 -0.01 0.34 16 42 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.06 0.42 7.58 -2.39 -0.02 0.40 16 Total: -1.00 -71.85 381.80 4.57 -67.28 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 1.00 Total: 6.52 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 5.12 Total: -3.79 kcal Atomic # 7 Polarization: -75.86 SS G_CDS: -3.37 Total: -79.23 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -0.21 Total: -36.55 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -71.85 4.57 -67.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916615595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.706 kcal (2) G-P(sol) polarization free energy of solvation -71.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds