Wall clock time and date at job start Tue Mar 31 2020 16:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47057 * 2 1 4 4 C 1.53000 * 109.46876 * 119.99916 * 2 1 3 5 5 N 1.46504 * 109.47021 * 174.35201 * 4 2 1 6 6 C 1.46509 * 119.99571 * 275.30802 * 5 4 2 7 7 C 1.50693 * 109.46900 * 269.99829 * 6 5 4 8 8 H 1.07996 * 120.00190 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99595 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00493 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99784 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47410 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47122 * 120.00203 * 11 9 7 14 14 H 1.48505 * 109.47074 * 239.99747 * 11 9 7 15 15 C 1.34773 * 120.00236 * 95.30791 * 5 4 2 16 16 O 1.21538 * 120.00134 * 5.48470 * 15 5 4 17 17 C 1.47935 * 119.99969 * 185.48591 * 15 5 4 18 18 C 1.38618 * 121.05669 * 54.98356 * 17 15 5 19 19 C 1.40022 * 119.53165 * 180.02562 * 18 17 15 20 20 O 1.35598 * 119.13974 * 180.02562 * 19 18 17 21 21 N 1.31418 * 121.71906 * 0.28160 * 19 18 17 22 22 C 1.33648 * 121.76268 * 359.43787 * 21 19 18 23 23 C 1.40662 * 120.88598 * 180.28012 * 22 21 19 24 24 C 1.36103 * 119.75348 * 180.26559 * 23 22 21 25 25 C 1.39297 * 121.02994 * 0.02562 * 24 23 22 26 26 C 1.36282 * 120.82014 * 0.02562 * 25 24 23 27 27 C 1.40068 * 119.66053 * 359.95205 * 26 25 24 28 28 H 1.09000 * 109.46991 * 299.99764 * 1 2 3 29 29 H 1.08997 * 109.47114 * 60.00412 * 1 2 3 30 30 H 1.09002 * 109.47177 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47381 * 239.99596 * 2 1 3 32 32 H 1.09001 * 109.46751 * 305.05568 * 3 2 1 33 33 H 1.08997 * 109.47412 * 65.05530 * 3 2 1 34 34 H 1.09003 * 109.46804 * 185.05736 * 3 2 1 35 35 H 1.08998 * 109.47717 * 54.34796 * 4 2 1 36 36 H 1.08999 * 109.47134 * 294.34547 * 4 2 1 37 37 H 1.09005 * 109.46932 * 30.00247 * 6 5 4 38 38 H 1.08997 * 109.46902 * 150.00015 * 6 5 4 39 39 H 0.96991 * 119.99895 * 179.97438 * 10 9 7 40 40 H 1.07995 * 120.23606 * 0.04630 * 18 17 15 41 41 H 0.96694 * 113.99770 * 90.00640 * 20 19 18 42 42 H 1.07998 * 120.12006 * 0.24465 * 23 22 21 43 43 H 1.08002 * 119.48395 * 179.97438 * 24 23 22 44 44 H 1.08005 * 119.59045 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.17014 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4987 -0.8401 1.1833 6 6 4.1106 -1.9538 0.4540 7 6 4.3103 -3.1177 1.3901 8 1 4.0110 -3.0363 2.4245 9 6 4.8752 -4.2867 0.9257 10 7 5.2401 -4.3857 -0.3339 11 14 5.1221 -5.7298 2.0858 12 1 4.6316 -5.3664 3.4395 13 1 4.3639 -6.9039 1.5838 14 1 6.5667 -6.0668 2.1562 15 6 4.2777 0.0750 1.7934 16 8 3.7733 0.9411 2.4808 17 6 5.7467 0.0252 1.6263 18 6 6.3237 0.0317 0.3659 19 6 7.7179 -0.0169 0.2448 20 8 8.2739 -0.0095 -0.9919 21 7 8.5013 -0.0745 1.2984 22 6 8.0098 -0.0786 2.5412 23 6 8.8658 -0.1348 3.6560 24 6 8.3402 -0.1432 4.9114 25 6 6.9627 -0.0974 5.1134 26 6 6.1035 -0.0434 4.0570 27 6 6.6102 -0.0327 2.7512 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6046 1.9817 -0.8413 33 1 1.7525 1.9295 0.9318 34 1 3.1263 1.4438 -0.0906 35 1 1.5964 -1.7155 1.3014 36 1 1.7617 -0.1523 2.1363 37 1 3.4573 -2.2542 -0.3653 38 1 5.0746 -1.6399 0.0537 39 1 5.6378 -5.2079 -0.6604 40 1 5.7024 0.0744 -0.5164 41 1 8.4677 0.8752 -1.3307 42 1 9.9361 -0.1715 3.5161 43 1 9.0014 -0.1869 5.7642 44 1 6.5708 -0.1057 6.1198 45 1 5.0374 -0.0078 4.2258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917363865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:28 Heat of formation + Delta-G solvation = -25.460951 kcal Electronic energy + Delta-G solvation = -28919.954015 eV Core-core repulsion = 25095.589652 eV Total energy + Delta-G solvation = -3824.364363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.89785 -39.18290 -38.07953 -36.12650 -35.57549 -34.28608 -33.03307 -32.33716 -29.99969 -29.50231 -27.56986 -26.91259 -26.26234 -24.19225 -23.31671 -22.99768 -22.22986 -20.14078 -19.30545 -18.20697 -17.77193 -17.16919 -16.67633 -16.31681 -15.78617 -15.27113 -14.91401 -14.59918 -14.56007 -14.31522 -14.19732 -13.86259 -13.57245 -13.30361 -13.21175 -12.73406 -12.45347 -12.24692 -12.00938 -11.79351 -11.63431 -11.54414 -11.38895 -11.19170 -11.18428 -11.05152 -10.93662 -10.79173 -10.67223 -10.41599 -10.27058 -10.03535 -9.77290 -9.71252 -9.03794 -8.61153 -8.35524 -8.00849 -7.80569 -6.20209 -4.26826 0.47935 1.00527 2.07717 2.95743 3.18035 3.21079 3.30091 3.33913 3.63572 3.80703 4.30786 4.31533 4.74198 4.87959 4.97081 5.05237 5.14522 5.16075 5.20877 5.30762 5.31215 5.38396 5.47263 5.67350 5.76562 5.82758 5.91420 5.94519 5.98115 6.06831 6.18576 6.19666 6.22504 6.24824 6.30746 6.50466 6.51229 6.59798 6.62398 6.66033 6.71304 7.00444 7.10068 7.38507 7.65375 7.72741 8.00682 8.09323 8.11628 8.63610 8.82142 9.40216 10.86781 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008094 B = 0.006086 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3458.365758 B = 4599.450829 C = 5827.195591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.121 3.879 5 N -0.579 5.579 6 C 0.225 3.775 7 C -0.538 4.538 8 H 0.060 0.940 9 C 0.068 3.932 10 N -0.886 5.886 11 Si 0.893 3.107 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.282 1.282 15 C 0.561 3.439 16 O -0.555 6.555 17 C -0.018 4.018 18 C -0.145 4.145 19 C 0.347 3.653 20 O -0.476 6.476 21 N -0.493 5.493 22 C 0.152 3.848 23 C -0.101 4.101 24 C -0.098 4.098 25 C -0.127 4.127 26 C -0.073 4.073 27 C -0.074 4.074 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.039 0.961 38 H 0.048 0.952 39 H 0.265 0.735 40 H 0.147 0.853 41 H 0.397 0.603 42 H 0.134 0.866 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.196 10.434 2.839 10.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.195 4.195 4 C -0.002 4.002 5 N -0.308 5.308 6 C 0.105 3.895 7 C -0.576 4.576 8 H 0.078 0.922 9 C -0.136 4.136 10 N -0.523 5.523 11 Si 0.720 3.280 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.207 1.207 15 C 0.348 3.652 16 O -0.436 6.436 17 C -0.029 4.029 18 C -0.166 4.166 19 C 0.154 3.846 20 O -0.282 6.282 21 N -0.213 5.213 22 C 0.030 3.970 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.145 4.145 26 C -0.092 4.092 27 C -0.076 4.076 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.165 0.835 41 H 0.254 0.746 42 H 0.152 0.848 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.850 10.069 2.990 10.538 hybrid contribution -0.521 -0.736 0.302 0.951 sum 0.330 9.332 3.292 9.901 Atomic orbital electron populations 1.21742 0.94972 1.01720 1.01460 1.21513 0.95549 0.96777 0.99436 1.21756 1.00765 0.95703 1.01232 1.21475 0.80059 1.00960 0.97670 1.48170 1.05814 1.25692 1.51081 1.19758 0.94663 0.82843 0.92208 1.21431 1.41804 0.97799 0.96600 0.92152 1.24906 0.94912 0.98590 0.95194 1.69913 1.40933 1.27514 1.13970 0.86510 0.78112 0.82224 0.81143 1.19591 1.20724 1.20747 1.17920 0.85472 0.81982 0.79870 1.90711 1.74826 1.37733 1.40284 1.20206 0.94309 0.95613 0.92809 1.22152 0.94994 1.01596 0.97907 1.19028 0.87018 0.93888 0.84668 1.84826 1.83184 1.33544 1.26678 1.67170 1.40761 1.14998 0.98373 1.18383 0.89972 0.98338 0.90281 1.20712 0.99608 1.01135 0.90506 1.20848 0.95325 0.98758 0.96829 1.20888 0.93284 1.01226 0.99123 1.21090 1.00875 0.96273 0.90946 1.18549 0.93189 1.01971 0.93941 0.92774 0.92832 0.92536 0.90837 0.93515 0.92381 0.93318 0.90207 0.90384 0.94265 0.93432 0.92509 0.83513 0.74555 0.84795 0.85440 0.85615 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.19 37.16 0.34 -1.36 16 2 C -0.11 -1.68 3.12 -90.62 -0.28 -1.96 16 3 C -0.14 -2.01 8.20 37.16 0.30 -1.70 16 4 C 0.12 2.12 4.97 -4.04 -0.02 2.10 16 5 N -0.58 -11.71 2.28 -176.14 -0.40 -12.11 16 6 C 0.22 5.26 5.01 -5.19 -0.03 5.23 16 7 C -0.54 -14.15 9.39 -34.44 -0.32 -14.48 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 10 N -0.89 -24.84 13.29 55.43 0.74 -24.11 16 11 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.56 11.39 5.10 -12.29 -0.06 11.32 16 16 O -0.55 -11.61 14.77 5.33 0.08 -11.53 16 17 C -0.02 -0.37 4.99 -104.37 -0.52 -0.89 16 18 C -0.14 -2.70 7.57 -38.77 -0.29 -2.99 16 19 C 0.35 6.31 7.71 -17.06 -0.13 6.18 16 20 O -0.48 -7.37 13.54 -18.49 -0.25 -7.62 16 21 N -0.49 -9.35 10.32 -11.07 -0.11 -9.47 16 22 C 0.15 2.82 6.61 -84.88 -0.56 2.26 16 23 C -0.10 -1.54 9.98 -39.43 -0.39 -1.93 16 24 C -0.10 -1.29 9.94 -39.96 -0.40 -1.69 16 25 C -0.13 -1.82 9.96 -39.89 -0.40 -2.22 16 26 C -0.07 -1.29 9.26 -39.60 -0.37 -1.66 16 27 C -0.07 -1.43 5.76 -106.51 -0.61 -2.05 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.16 8.13 -51.93 -0.42 0.73 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.78 6.97 -51.93 -0.36 0.42 16 35 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 36 H 0.08 1.36 7.21 -51.93 -0.37 0.99 16 37 H 0.04 0.95 8.06 -51.93 -0.42 0.54 16 38 H 0.05 1.16 4.47 -51.93 -0.23 0.93 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.15 2.53 7.49 -52.49 -0.39 2.14 16 41 H 0.40 3.62 9.06 45.56 0.41 4.03 16 42 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 43 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 44 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 45 H 0.13 2.46 6.52 -52.49 -0.34 2.11 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -31.74 374.32 -8.65 -40.39 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.48 Total: 6.72 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -3.84 Total: -4.11 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.22 Total: -45.69 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.17 Total: -19.15 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.74 -8.65 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917363865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.932 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds