Wall clock time and date at job start Tue Mar 31 2020 16:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47057 * 2 1 4 4 C 1.53000 * 109.46876 * 119.99916 * 2 1 3 5 5 N 1.46504 * 109.47021 * 174.35201 * 4 2 1 6 6 C 1.46509 * 119.99571 * 275.30802 * 5 4 2 7 7 C 1.50693 * 109.46900 * 269.99829 * 6 5 4 8 8 H 1.07996 * 120.00190 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99595 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00493 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99784 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47410 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47122 * 120.00203 * 11 9 7 14 14 H 1.48505 * 109.47074 * 239.99747 * 11 9 7 15 15 C 1.34773 * 120.00236 * 95.30791 * 5 4 2 16 16 O 1.21538 * 120.00134 * 5.48470 * 15 5 4 17 17 C 1.47935 * 119.99969 * 185.48591 * 15 5 4 18 18 C 1.38618 * 121.05669 * 54.98356 * 17 15 5 19 19 C 1.40022 * 119.53165 * 180.02562 * 18 17 15 20 20 O 1.35598 * 119.13974 * 180.02562 * 19 18 17 21 21 N 1.31418 * 121.71906 * 0.28160 * 19 18 17 22 22 C 1.33648 * 121.76268 * 359.43787 * 21 19 18 23 23 C 1.40662 * 120.88598 * 180.28012 * 22 21 19 24 24 C 1.36103 * 119.75348 * 180.26559 * 23 22 21 25 25 C 1.39297 * 121.02994 * 0.02562 * 24 23 22 26 26 C 1.36282 * 120.82014 * 0.02562 * 25 24 23 27 27 C 1.40068 * 119.66053 * 359.95205 * 26 25 24 28 28 H 1.09000 * 109.46991 * 299.99764 * 1 2 3 29 29 H 1.08997 * 109.47114 * 60.00412 * 1 2 3 30 30 H 1.09002 * 109.47177 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47381 * 239.99596 * 2 1 3 32 32 H 1.09001 * 109.46751 * 305.05568 * 3 2 1 33 33 H 1.08997 * 109.47412 * 65.05530 * 3 2 1 34 34 H 1.09003 * 109.46804 * 185.05736 * 3 2 1 35 35 H 1.08998 * 109.47717 * 54.34796 * 4 2 1 36 36 H 1.08999 * 109.47134 * 294.34547 * 4 2 1 37 37 H 1.09005 * 109.46932 * 30.00247 * 6 5 4 38 38 H 1.08997 * 109.46902 * 150.00015 * 6 5 4 39 39 H 0.96991 * 119.99895 * 179.97438 * 10 9 7 40 40 H 1.07995 * 120.23606 * 0.04630 * 18 17 15 41 41 H 0.96694 * 113.99770 * 90.00640 * 20 19 18 42 42 H 1.07998 * 120.12006 * 0.24465 * 23 22 21 43 43 H 1.08002 * 119.48395 * 179.97438 * 24 23 22 44 44 H 1.08005 * 119.59045 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.17014 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4987 -0.8401 1.1833 6 6 4.1106 -1.9538 0.4540 7 6 4.3103 -3.1177 1.3901 8 1 4.0110 -3.0363 2.4245 9 6 4.8752 -4.2867 0.9257 10 7 5.2401 -4.3857 -0.3339 11 14 5.1221 -5.7298 2.0858 12 1 4.6316 -5.3664 3.4395 13 1 4.3639 -6.9039 1.5838 14 1 6.5667 -6.0668 2.1562 15 6 4.2777 0.0750 1.7934 16 8 3.7733 0.9411 2.4808 17 6 5.7467 0.0252 1.6263 18 6 6.3237 0.0317 0.3659 19 6 7.7179 -0.0169 0.2448 20 8 8.2739 -0.0095 -0.9919 21 7 8.5013 -0.0745 1.2984 22 6 8.0098 -0.0786 2.5412 23 6 8.8658 -0.1348 3.6560 24 6 8.3402 -0.1432 4.9114 25 6 6.9627 -0.0974 5.1134 26 6 6.1035 -0.0434 4.0570 27 6 6.6102 -0.0327 2.7512 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6046 1.9817 -0.8413 33 1 1.7525 1.9295 0.9318 34 1 3.1263 1.4438 -0.0906 35 1 1.5964 -1.7155 1.3014 36 1 1.7617 -0.1523 2.1363 37 1 3.4573 -2.2542 -0.3653 38 1 5.0746 -1.6399 0.0537 39 1 5.6378 -5.2079 -0.6604 40 1 5.7024 0.0744 -0.5164 41 1 8.4677 0.8752 -1.3307 42 1 9.9361 -0.1715 3.5161 43 1 9.0014 -0.1869 5.7642 44 1 6.5708 -0.1057 6.1198 45 1 5.0374 -0.0078 4.2258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917363865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:27 Heat of formation + Delta-G solvation = -46.511686 kcal Electronic energy + Delta-G solvation = -28920.866843 eV Core-core repulsion = 25095.589652 eV Total energy + Delta-G solvation = -3825.277191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.28266 -40.69876 -39.32989 -37.57111 -36.85693 -35.87949 -34.57595 -34.08327 -31.27973 -30.77821 -29.43881 -28.09174 -27.66920 -25.70871 -24.80026 -24.58554 -23.57176 -21.42878 -20.65272 -19.67130 -19.07162 -18.80892 -18.23996 -18.00237 -17.32692 -16.72349 -16.41324 -16.18199 -15.88628 -15.69451 -15.48797 -15.18998 -14.90674 -14.67545 -14.54359 -14.43735 -13.92086 -13.78413 -13.46031 -13.15294 -13.01365 -12.87639 -12.77433 -12.68474 -12.59834 -12.42023 -12.39223 -12.35970 -12.18474 -11.87382 -11.69836 -11.59116 -11.47599 -11.29233 -10.69803 -10.44442 -9.69815 -9.54811 -9.24322 -8.26303 -6.39493 -0.87204 -0.30750 0.73933 1.32079 1.34857 1.44547 1.53950 1.78803 2.14195 2.34943 2.51325 2.98497 3.05119 3.27785 3.56358 3.61021 3.81909 3.90550 3.99859 4.05049 4.13398 4.16145 4.32723 4.39126 4.46463 4.61818 4.63888 4.68544 4.76500 4.84372 4.87835 4.98012 4.98917 5.00486 5.04023 5.15053 5.19433 5.30034 5.36803 5.39226 5.43288 5.44583 5.57575 5.74773 5.84035 5.99272 6.38676 6.53767 6.70958 6.77548 7.07474 7.31478 8.79276 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008094 B = 0.006086 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3458.365758 B = 4599.450829 C = 5827.195591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 C -0.130 4.130 4 C 0.117 3.883 5 N -0.581 5.581 6 C 0.241 3.759 7 C -0.545 4.545 8 H 0.049 0.951 9 C 0.023 3.977 10 N -0.914 5.914 11 Si 0.948 3.052 12 H -0.268 1.268 13 H -0.271 1.271 14 H -0.283 1.283 15 C 0.565 3.435 16 O -0.565 6.565 17 C -0.045 4.045 18 C -0.151 4.151 19 C 0.340 3.660 20 O -0.482 6.482 21 N -0.503 5.503 22 C 0.129 3.871 23 C -0.108 4.108 24 C -0.082 4.082 25 C -0.108 4.108 26 C -0.107 4.107 27 C -0.097 4.097 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.026 0.974 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.027 0.973 38 H 0.038 0.962 39 H 0.267 0.733 40 H 0.150 0.850 41 H 0.423 0.577 42 H 0.156 0.844 43 H 0.177 0.823 44 H 0.161 0.839 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 10.538 4.453 11.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.128 4.128 3 C -0.188 4.188 4 C -0.005 4.005 5 N -0.309 5.309 6 C 0.121 3.879 7 C -0.583 4.583 8 H 0.067 0.933 9 C -0.178 4.178 10 N -0.553 5.553 11 Si 0.773 3.227 12 H -0.193 1.193 13 H -0.196 1.196 14 H -0.209 1.209 15 C 0.352 3.648 16 O -0.447 6.447 17 C -0.056 4.056 18 C -0.173 4.173 19 C 0.147 3.853 20 O -0.292 6.292 21 N -0.223 5.223 22 C 0.008 3.992 23 C -0.126 4.126 24 C -0.101 4.101 25 C -0.126 4.126 26 C -0.126 4.126 27 C -0.099 4.099 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.045 0.955 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.167 0.833 41 H 0.284 0.716 42 H 0.174 0.826 43 H 0.194 0.806 44 H 0.179 0.821 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.408 10.204 4.597 11.280 hybrid contribution -0.649 -0.703 -0.125 0.965 sum 0.759 9.501 4.472 10.528 Atomic orbital electron populations 1.21700 0.92359 1.02394 1.02766 1.21467 0.97633 0.96310 0.97344 1.21692 0.99423 0.95751 1.01916 1.21663 0.78553 1.01099 0.99159 1.48103 1.06931 1.24993 1.50900 1.19352 0.94062 0.82994 0.91501 1.21627 1.41464 0.98849 0.96389 0.93292 1.25598 0.94804 1.00890 0.96492 1.70000 1.41800 1.28183 1.15286 0.85648 0.77835 0.79679 0.79504 1.19275 1.19644 1.20886 1.17999 0.85835 0.81606 0.79342 1.90678 1.75218 1.38072 1.40729 1.20347 0.94153 0.97193 0.93858 1.22233 0.95565 1.01821 0.97686 1.19093 0.86902 0.93891 0.85376 1.84763 1.82858 1.35955 1.25600 1.67244 1.40885 1.15374 0.98792 1.18877 0.90213 0.99024 0.91130 1.21102 1.00441 1.00789 0.90291 1.21375 0.95323 0.95834 0.97551 1.21368 0.93624 0.97864 0.99737 1.21111 1.00779 0.99206 0.91468 1.18812 0.93791 1.02855 0.94469 0.91975 0.90997 0.92221 0.91939 0.91080 0.92985 0.95513 0.90701 0.90442 0.95518 0.94415 0.92412 0.83256 0.71571 0.82605 0.80572 0.82098 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.19 71.98 0.66 -2.40 16 2 C -0.11 -3.21 3.12 -10.79 -0.03 -3.24 16 3 C -0.13 -3.81 8.20 71.98 0.59 -3.22 16 4 C 0.12 4.20 4.97 86.38 0.43 4.63 16 5 N -0.58 -24.46 2.28 -829.46 -1.89 -26.35 16 6 C 0.24 11.75 5.01 85.63 0.43 12.18 16 7 C -0.54 -29.36 9.39 25.60 0.24 -29.12 16 8 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 9 C 0.02 1.25 5.46 84.65 0.46 1.72 16 10 N -0.91 -52.04 13.29 21.45 0.28 -51.75 16 11 Si 0.95 43.58 29.54 68.60 2.03 45.60 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 14 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 15 C 0.56 23.93 5.10 86.81 0.44 24.37 16 16 O -0.57 -24.56 14.77 -3.84 -0.06 -24.61 16 17 C -0.04 -1.86 4.99 -19.70 -0.10 -1.96 16 18 C -0.15 -5.91 7.57 22.79 0.17 -5.74 16 19 C 0.34 12.69 7.71 85.19 0.66 13.35 16 20 O -0.48 -15.01 13.54 -89.08 -1.21 -16.22 16 21 N -0.50 -19.17 10.32 -302.27 -3.12 -22.29 16 22 C 0.13 4.77 6.61 40.29 0.27 5.03 16 23 C -0.11 -3.04 9.98 22.36 0.22 -2.82 16 24 C -0.08 -1.84 9.94 22.03 0.22 -1.62 16 25 C -0.11 -2.82 9.96 22.07 0.22 -2.60 16 26 C -0.11 -3.77 9.26 22.26 0.21 -3.56 16 27 C -0.10 -3.83 5.76 -21.09 -0.12 -3.95 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 2.00 8.13 -2.39 -0.02 1.98 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.03 0.87 6.97 -2.39 -0.02 0.86 16 35 H 0.07 2.71 8.11 -2.39 -0.02 2.69 16 36 H 0.08 2.76 7.21 -2.39 -0.02 2.75 16 37 H 0.03 1.36 8.06 -2.38 -0.02 1.34 16 38 H 0.04 1.94 4.47 -2.39 -0.01 1.93 16 39 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 40 H 0.15 5.50 7.49 -2.91 -0.02 5.48 16 41 H 0.42 7.59 9.06 -74.06 -0.67 6.92 16 42 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 43 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 44 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 45 H 0.12 4.46 6.52 -2.91 -0.02 4.44 16 Total: -1.00 -70.04 374.32 1.35 -68.69 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.35 Total: 25.88 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 4.97 Total: 1.06 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -4.73 Total: -100.39 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -1.26 Total: -40.83 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -70.04 1.35 -68.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917363865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.178 kcal (2) G-P(sol) polarization free energy of solvation -70.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds