Wall clock time and date at job start Tue Mar 31 2020 16:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47210 * 2 1 4 4 C 1.52999 * 109.46979 * 119.99987 * 2 1 3 5 5 N 1.46501 * 109.47427 * 64.99922 * 4 2 1 6 6 C 1.46494 * 119.99782 * 264.34163 * 5 4 2 7 7 C 1.50693 * 109.47435 * 274.20950 * 6 5 4 8 8 H 1.08010 * 119.99743 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00585 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00016 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00554 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47170 * 89.99620 * 11 9 7 13 13 H 1.48493 * 109.47517 * 209.99791 * 11 9 7 14 14 H 1.48498 * 109.47083 * 330.00299 * 11 9 7 15 15 C 1.34776 * 119.99966 * 84.33528 * 5 4 2 16 16 O 1.21522 * 120.00151 * 3.04820 * 15 5 4 17 17 C 1.48147 * 119.99991 * 183.03992 * 15 5 4 18 18 C 1.40033 * 120.86627 * 311.27947 * 17 15 5 19 19 C 1.38142 * 119.26433 * 179.97438 * 18 17 15 20 20 N 1.31714 * 121.06847 * 359.97438 * 19 18 17 21 21 C 1.32819 * 121.89994 * 0.02562 * 20 19 18 22 22 C 1.47663 * 119.69595 * 179.97438 * 21 20 19 23 23 C 1.36032 * 125.93714 * 0.02562 * 22 21 20 24 24 C 1.40831 * 106.73279 * 179.97438 * 23 22 21 25 25 C 1.34802 * 107.04617 * 0.02562 * 24 23 22 26 26 O 1.34226 * 108.68441 * 0.23409 * 25 24 23 27 27 C 1.39476 * 120.86065 * 131.53576 * 17 15 5 28 28 H 1.08995 * 109.47081 * 59.99617 * 1 2 3 29 29 H 1.08995 * 109.47494 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47165 * 299.99853 * 1 2 3 31 31 H 1.08996 * 109.47041 * 239.99672 * 2 1 3 32 32 H 1.09002 * 109.46910 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47214 * 300.00083 * 3 2 1 34 34 H 1.09003 * 109.47299 * 60.00309 * 3 2 1 35 35 H 1.08997 * 109.47529 * 304.99595 * 4 2 1 36 36 H 1.09007 * 109.47003 * 184.99678 * 4 2 1 37 37 H 1.08996 * 109.47488 * 34.21541 * 6 5 4 38 38 H 1.09004 * 109.47064 * 154.20841 * 6 5 4 39 39 H 0.96995 * 120.00147 * 180.02562 * 10 9 7 40 40 H 1.07997 * 120.36705 * 0.02562 * 18 17 15 41 41 H 1.08003 * 119.46587 * 179.97438 * 19 18 17 42 42 H 1.07997 * 126.63335 * 359.97438 * 23 22 21 43 43 H 1.08008 * 126.47660 * 180.02562 * 24 23 22 44 44 H 1.08003 * 125.65785 * 179.97438 * 25 24 23 45 45 H 1.07997 * 120.55703 * 0.02562 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1906 6 6 0.4358 -2.5871 1.8685 7 6 0.7501 -2.9001 3.3087 8 1 1.7557 -2.7730 3.6819 9 6 -0.2457 -3.3488 4.1500 10 7 -1.4701 -3.5042 3.6955 11 14 0.1441 -3.7376 5.9350 12 1 -0.0500 -2.5187 6.7609 13 1 -0.7612 -4.8114 6.4170 14 1 1.5537 -4.1915 6.0463 15 6 2.4151 -3.0135 0.5130 16 8 3.4529 -2.6478 -0.0027 17 6 1.9883 -4.4274 0.3969 18 6 1.5784 -5.1490 1.5247 19 6 1.1866 -6.4656 1.3784 20 7 1.1926 -7.0494 0.1977 21 6 1.5728 -6.4070 -0.9009 22 6 1.5611 -7.1091 -2.1999 23 6 1.1864 -8.4004 -2.4061 24 6 1.3302 -8.6492 -3.7848 25 6 1.7814 -7.5100 -4.3469 26 8 1.9248 -6.5838 -3.3860 27 6 1.9894 -5.0760 -0.8379 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6054 -0.2617 2.1370 36 1 3.1263 -0.6444 1.2951 37 1 -0.3196 -1.8026 1.8238 38 1 0.0584 -3.4833 1.3759 39 1 -2.1708 -3.8195 4.2875 40 1 1.5679 -4.6812 2.4981 41 1 0.8702 -7.0254 2.2462 42 1 0.8447 -9.0997 -1.6573 43 1 1.1190 -9.5772 -4.2953 44 1 1.9961 -7.3675 -5.3957 45 1 2.3028 -4.5558 -1.7310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930905953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:30 Heat of formation + Delta-G solvation = -4.940225 kcal Electronic energy + Delta-G solvation = -28034.613387 eV Core-core repulsion = 24211.138869 eV Total energy + Delta-G solvation = -3823.474517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.52755 -41.70827 -40.23226 -37.69389 -35.93327 -34.37822 -34.12755 -33.38017 -33.21834 -29.79153 -29.33585 -28.03438 -27.73520 -25.46847 -24.81497 -24.49776 -22.55771 -22.10991 -21.37743 -20.37297 -19.02184 -18.56670 -17.94731 -17.63111 -17.15212 -17.06101 -16.73465 -16.52020 -16.22442 -15.96571 -15.53348 -15.06595 -15.00934 -14.53981 -14.46700 -14.21239 -13.92272 -13.81726 -13.73626 -13.50386 -13.36122 -13.05527 -13.00454 -12.72599 -12.69321 -12.60013 -12.18612 -12.12328 -11.89464 -11.61538 -11.60203 -11.34304 -11.09464 -10.92799 -10.62881 -10.58728 -10.47089 -9.53553 -9.05280 -8.20019 -6.34450 -0.45705 -0.15329 0.96538 1.44100 1.48645 1.55916 1.60010 1.72427 1.77278 2.12145 2.42582 2.79535 3.09319 3.32478 3.41194 3.66442 3.90350 3.92387 3.97292 4.00450 4.10175 4.15636 4.21105 4.37997 4.57402 4.58490 4.64160 4.75783 4.76835 4.85603 4.87541 4.90647 4.99128 5.01631 5.03408 5.09165 5.15848 5.17337 5.24452 5.38305 5.42423 5.52646 5.58285 5.66003 5.77797 6.03348 6.08468 6.42956 6.74232 6.75998 7.09793 7.36069 8.85067 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009696 B = 0.004439 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.203563 B = 6306.051975 C = 8442.759055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.121 3.879 5 N -0.580 5.580 6 C 0.245 3.755 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.037 3.963 10 N -0.909 5.909 11 Si 0.949 3.051 12 H -0.279 1.279 13 H -0.280 1.280 14 H -0.266 1.266 15 C 0.554 3.446 16 O -0.582 6.582 17 C -0.086 4.086 18 C -0.126 4.126 19 C 0.104 3.896 20 N -0.466 5.466 21 C 0.179 3.821 22 C -0.012 4.012 23 C -0.155 4.155 24 C -0.225 4.225 25 C -0.017 4.017 26 O -0.187 6.187 27 C -0.120 4.120 28 H 0.067 0.933 29 H 0.034 0.966 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.031 0.969 38 H 0.026 0.974 39 H 0.269 0.731 40 H 0.168 0.832 41 H 0.190 0.810 42 H 0.159 0.841 43 H 0.184 0.816 44 H 0.251 0.749 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.046 -3.271 -10.814 11.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 C -0.192 4.192 4 C -0.001 4.001 5 N -0.308 5.308 6 C 0.125 3.875 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.166 4.166 10 N -0.546 5.546 11 Si 0.774 3.226 12 H -0.205 1.205 13 H -0.206 1.206 14 H -0.191 1.191 15 C 0.342 3.658 16 O -0.465 6.465 17 C -0.097 4.097 18 C -0.145 4.145 19 C -0.053 4.053 20 N -0.176 5.176 21 C 0.043 3.957 22 C -0.062 4.062 23 C -0.176 4.176 24 C -0.243 4.243 25 C -0.085 4.085 26 O -0.083 6.083 27 C -0.141 4.141 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.044 0.956 39 H 0.078 0.922 40 H 0.185 0.815 41 H 0.207 0.793 42 H 0.176 0.824 43 H 0.201 0.799 44 H 0.267 0.733 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.201 -3.649 -11.091 12.107 hybrid contribution 0.057 0.545 1.251 1.366 sum 3.258 -3.104 -9.840 10.820 Atomic orbital electron populations 1.21821 0.94767 1.00985 1.02151 1.21424 0.96406 0.97529 0.97136 1.21698 1.01037 0.93574 1.02881 1.21601 0.99979 0.79600 0.98937 1.48150 1.25634 1.08253 1.48747 1.19382 0.81318 0.95453 0.91346 1.21522 0.95815 1.45876 0.95308 0.92377 1.25519 0.94460 0.94676 1.01931 1.70012 1.01774 1.45387 1.37472 0.85693 0.78527 0.78045 0.80339 1.20455 1.20566 1.19073 1.18384 0.83427 0.85500 0.78519 1.90668 1.25178 1.80092 1.50520 1.20267 0.99906 0.94614 0.94880 1.23393 0.93987 0.95673 1.01466 1.23005 0.95411 0.92190 0.94695 1.67334 1.13627 1.38430 0.98257 1.18304 0.97960 0.89520 0.89937 1.19682 1.09173 0.93574 0.83736 1.22133 1.02557 0.94675 0.98210 1.22202 1.07334 1.01508 0.93272 1.25183 1.01809 0.86747 0.94713 1.84032 1.67346 1.41303 1.15627 1.22052 0.99449 0.94966 0.97654 0.91412 0.94693 0.92331 0.93024 0.92450 0.91177 0.91590 0.89685 0.91455 0.95071 0.95631 0.92153 0.81468 0.79282 0.82359 0.79916 0.73316 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 8.34 71.98 0.60 -3.70 16 2 C -0.11 -3.28 3.09 -10.79 -0.03 -3.31 16 3 C -0.13 -3.20 9.19 71.98 0.66 -2.54 16 4 C 0.12 4.39 4.83 86.38 0.42 4.81 16 5 N -0.58 -24.35 2.19 -829.24 -1.81 -26.17 16 6 C 0.25 11.27 3.87 85.63 0.33 11.60 16 7 C -0.55 -26.27 6.65 25.60 0.17 -26.10 16 8 H 0.06 2.84 7.81 -2.91 -0.02 2.81 16 9 C 0.04 1.77 5.46 84.65 0.46 2.23 16 10 N -0.91 -46.84 13.29 21.45 0.28 -46.55 16 11 Si 0.95 38.80 29.54 68.60 2.03 40.83 16 12 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 13 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 14 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 15 C 0.55 24.26 7.25 86.88 0.63 24.89 16 16 O -0.58 -27.30 16.69 -3.78 -0.06 -27.36 16 17 C -0.09 -3.56 4.89 -19.91 -0.10 -3.66 16 18 C -0.13 -5.02 7.73 22.68 0.18 -4.85 16 19 C 0.10 3.71 11.16 84.69 0.95 4.65 16 20 N -0.47 -16.74 10.02 -185.28 -1.86 -18.60 16 21 C 0.18 6.48 6.75 41.82 0.28 6.76 16 22 C -0.01 -0.38 7.03 24.25 0.17 -0.20 16 23 C -0.16 -4.13 10.58 22.39 0.24 -3.89 16 24 C -0.22 -4.36 10.88 22.12 0.24 -4.12 16 25 C -0.02 -0.31 12.08 67.03 0.81 0.50 16 26 O -0.19 -5.27 10.39 -5.88 -0.06 -5.33 16 27 C -0.12 -4.63 9.48 22.90 0.22 -4.41 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.03 1.25 6.25 -2.39 -0.01 1.23 16 30 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 3.02 8.03 -2.39 -0.02 3.00 16 36 H 0.07 2.48 7.56 -2.38 -0.02 2.46 16 37 H 0.03 1.51 6.46 -2.39 -0.02 1.49 16 38 H 0.03 1.27 5.68 -2.38 -0.01 1.26 16 39 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 40 H 0.17 7.22 4.77 -2.91 -0.01 7.21 16 41 H 0.19 5.58 8.06 -2.91 -0.02 5.56 16 42 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 43 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 44 H 0.25 2.01 8.06 -2.91 -0.02 1.99 16 45 H 0.14 5.16 7.90 -2.91 -0.02 5.13 16 Total: -1.00 -61.27 376.54 5.73 -55.54 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 1.00 Total: 28.99 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 6.22 Total: -1.35 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -3.39 Total: -91.32 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -0.12 Total: -32.70 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -61.27 5.73 -55.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930905953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.597 kcal (2) G-P(sol) polarization free energy of solvation -61.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds