Wall clock time and date at job start Tue Mar 31 2020 15:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47037 * 2 1 4 4 C 1.52998 * 109.46847 * 239.99824 * 2 1 3 5 5 C 1.50698 * 109.47010 * 60.00506 * 4 2 1 6 6 H 1.08000 * 120.00030 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99643 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00151 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99729 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47428 * 59.99565 * 9 7 5 11 11 H 1.48507 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47184 * 299.99240 * 9 7 5 13 13 C 1.53003 * 109.46761 * 119.99659 * 2 1 3 14 14 N 1.46498 * 109.47552 * 300.00129 * 13 2 1 15 15 C 1.34774 * 119.99955 * 180.02562 * 14 13 2 16 16 O 1.21574 * 120.00340 * 0.02562 * 15 14 13 17 17 C 1.47672 * 120.00055 * 179.97438 * 15 14 13 18 18 C 1.40084 * 120.02830 * 0.02562 * 17 15 14 19 19 C 1.36379 * 120.63349 * 179.97438 * 18 17 15 20 20 C 1.39390 * 120.25995 * 359.80079 * 19 18 17 21 21 N 1.37735 * 132.85284 * 179.63891 * 20 19 18 22 22 H 0.97001 * 124.60586 * 0.63415 * 21 20 19 23 23 C 1.34733 * 110.79564 * 180.36055 * 21 20 19 24 24 C 1.37805 * 109.64706 * 0.22957 * 23 21 20 25 25 C 1.41745 * 126.94499 * 179.97438 * 24 23 21 26 26 O 1.21394 * 120.00376 * 180.02562 * 25 24 23 27 27 C 1.40551 * 119.52870 * 0.44132 * 20 19 18 28 28 C 1.38833 * 120.21685 * 359.53774 * 27 20 19 29 29 H 1.09009 * 109.47195 * 300.00214 * 1 2 3 30 30 H 1.09000 * 109.47167 * 59.99544 * 1 2 3 31 31 H 1.08994 * 109.47414 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47293 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47274 * 299.99806 * 3 2 1 34 34 H 1.09002 * 109.47118 * 60.00188 * 3 2 1 35 35 H 1.09007 * 109.46684 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.47180 * 299.99709 * 4 2 1 37 37 H 0.96996 * 120.00033 * 180.02562 * 8 7 5 38 38 H 1.08998 * 109.46760 * 179.97438 * 13 2 1 39 39 H 1.08998 * 109.46888 * 60.00422 * 13 2 1 40 40 H 0.96993 * 119.99673 * 0.02562 * 14 13 2 41 41 H 1.08004 * 119.68167 * 359.97438 * 18 17 15 42 42 H 1.07997 * 119.86617 * 180.02562 * 19 18 17 43 43 H 1.07995 * 125.17528 * 180.23292 * 23 21 20 44 44 H 1.08006 * 119.99680 * 0.02973 * 25 24 23 45 45 H 1.07997 * 120.28786 * 180.22329 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4796 6 1 0.9165 0.8671 -2.3805 7 6 1.8703 -0.4823 -3.7319 8 7 2.6263 -1.5516 -3.8526 9 14 1.2471 0.3979 -5.2571 10 1 1.7421 1.7980 -5.2576 11 1 1.7422 -0.3021 -6.4696 12 1 -0.2379 0.3979 -5.2567 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4455 15 6 1.8776 -0.4908 3.6696 16 8 2.5773 -1.4787 3.7812 17 6 1.3858 0.2057 4.8753 18 6 0.5800 1.3444 4.7475 19 6 0.1186 1.9968 5.8527 20 6 0.4413 1.5341 7.1273 21 7 0.1315 1.9816 8.3926 22 1 -0.4184 2.7577 8.5832 23 6 0.6909 1.1916 9.3297 24 6 1.4044 0.1829 8.7195 25 6 2.1360 -0.8497 9.3580 26 8 2.7227 -1.6786 8.6928 27 6 1.2534 0.3954 7.2659 28 6 1.7228 -0.2691 6.1409 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 -0.7217 -1.2490 36 1 1.6766 -1.7490 -1.2492 37 1 2.8606 -1.8830 -4.7335 38 1 3.1299 -0.7216 1.2491 39 1 1.6766 -1.7489 1.2493 40 1 0.9937 0.7578 2.3564 41 1 0.3216 1.7091 3.7643 42 1 -0.5022 2.8733 5.7397 43 1 0.5947 1.3281 10.3967 44 1 2.1714 -0.8991 10.4363 45 1 2.3440 -1.1463 6.2461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935993624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:58 Heat of formation + Delta-G solvation = -26.868160 kcal Electronic energy + Delta-G solvation = -26778.977583 eV Core-core repulsion = 22954.552199 eV Total energy + Delta-G solvation = -3824.425384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 3.29 seconds Orbital eigenvalues (eV) -41.95052 -39.70933 -38.69809 -37.38275 -36.63981 -33.63075 -32.55626 -32.08972 -30.25238 -29.78766 -27.11419 -26.49518 -26.28488 -24.71425 -23.90026 -22.71723 -22.48562 -20.54354 -19.83735 -18.45003 -18.42443 -17.23708 -16.73892 -16.27684 -15.98846 -15.61453 -15.39397 -14.93720 -14.92564 -14.56302 -14.24594 -14.02636 -13.88942 -13.84608 -13.55847 -13.17798 -13.04221 -12.76239 -12.59800 -12.24854 -12.03425 -11.82091 -11.36330 -11.12540 -10.98707 -10.85664 -10.61087 -10.37861 -10.25111 -10.12461 -9.91425 -9.85138 -9.80307 -9.14997 -8.91245 -8.82763 -8.58910 -8.33617 -8.22054 -5.97584 -3.98985 0.37350 0.90595 1.39048 2.43178 2.76788 3.09676 3.33210 3.38645 3.39067 3.44629 3.84118 4.05693 4.25946 4.27750 4.46738 4.59972 4.73050 4.84373 5.10278 5.12757 5.17086 5.37626 5.53526 5.60257 5.65907 5.75629 5.78692 5.87787 6.04180 6.18635 6.20538 6.22079 6.25971 6.36096 6.42569 6.59169 6.64466 6.64628 6.78006 6.80199 7.07927 7.09576 7.15138 7.43349 7.66660 7.79361 7.79995 8.01086 8.42152 8.48983 9.05562 9.63808 11.13830 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028404 B = 0.002187 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.549746 B =12799.491334 C =13588.687879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.128 3.872 14 N -0.717 5.717 15 C 0.552 3.448 16 O -0.539 6.539 17 C -0.144 4.144 18 C -0.070 4.070 19 C -0.126 4.126 20 C 0.091 3.909 21 N -0.567 5.567 22 H 0.422 0.578 23 C 0.134 3.866 24 C -0.283 4.283 25 C 0.399 3.601 26 O -0.469 6.469 27 C -0.073 4.073 28 C -0.005 4.005 29 H 0.028 0.972 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.028 0.972 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.260 0.740 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.396 0.604 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.188 0.812 44 H 0.095 0.905 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 11.396 29.166 32.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.005 3.995 14 N -0.368 5.368 15 C 0.339 3.661 16 O -0.417 6.417 17 C -0.148 4.148 18 C -0.090 4.090 19 C -0.146 4.146 20 C -0.014 4.014 21 N -0.166 5.166 22 H 0.260 0.740 23 C -0.001 4.001 24 C -0.291 4.291 25 C 0.260 3.740 26 O -0.343 6.343 27 C -0.077 4.077 28 C -0.025 4.025 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.233 0.767 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.205 0.795 44 H 0.111 0.889 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.218 10.209 28.715 31.319 hybrid contribution -1.006 1.414 -0.800 1.911 sum -8.224 11.623 27.915 31.336 Atomic orbital electron populations 1.21767 0.95306 1.01239 1.00138 1.20907 0.95446 0.95851 0.95087 1.21765 1.00646 0.95899 1.00138 1.19089 0.96405 0.95248 0.89412 1.21139 1.31236 1.12065 0.90523 0.92330 1.25018 0.95351 0.95093 0.99073 1.69952 1.36861 1.22976 1.23539 0.86708 0.79108 0.79742 0.82699 1.20360 1.21421 1.20355 1.21658 0.99060 0.96089 0.82691 1.46104 1.53100 1.31917 1.05719 1.18131 0.80594 0.84141 0.83229 1.90791 1.37992 1.26133 1.86795 1.19901 1.02930 0.98180 0.93783 1.20728 0.95774 0.94026 0.98458 1.19695 1.04249 1.02046 0.88652 1.18443 1.00544 0.96581 0.85851 1.41439 1.43990 1.26664 1.04546 0.74003 1.22553 0.92758 0.89865 0.94920 1.20569 1.12166 1.03861 0.92525 1.21747 0.76505 0.81291 0.94447 1.90606 1.36698 1.37386 1.69641 1.18836 1.00193 0.95999 0.92648 1.20814 0.94872 0.97940 0.88832 0.95346 0.91412 0.93285 0.93285 0.91411 0.95345 0.96292 0.96292 0.92981 0.91633 0.91640 0.76723 0.84944 0.85353 0.79459 0.88898 0.83511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 2 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.24 8.05 37.15 0.30 -1.94 16 4 C 0.04 0.89 4.04 -27.89 -0.11 0.78 16 5 C -0.51 -13.61 7.65 -34.44 -0.26 -13.87 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.13 2.35 4.56 -4.04 -0.02 2.33 16 14 N -0.72 -11.08 4.91 -61.31 -0.30 -11.38 16 15 C 0.55 9.29 7.77 -12.41 -0.10 9.19 16 16 O -0.54 -11.25 16.34 5.30 0.09 -11.16 16 17 C -0.14 -1.98 5.87 -104.95 -0.62 -2.59 16 18 C -0.07 -0.72 9.46 -39.56 -0.37 -1.09 16 19 C -0.13 -1.03 10.00 -39.82 -0.40 -1.43 16 20 C 0.09 0.78 7.24 -83.91 -0.61 0.17 16 21 N -0.57 -2.46 5.92 -10.26 -0.06 -2.52 16 22 H 0.42 0.29 8.96 -40.82 -0.37 -0.07 16 23 C 0.13 0.52 11.82 -16.44 -0.19 0.33 16 24 C -0.28 -2.39 6.13 -104.86 -0.64 -3.03 16 25 C 0.40 3.48 11.44 32.07 0.37 3.85 16 26 O -0.47 -6.62 16.81 5.46 0.09 -6.53 16 27 C -0.07 -0.84 6.23 -104.95 -0.65 -1.49 16 28 C -0.01 -0.07 9.34 -38.96 -0.36 -0.44 16 29 H 0.03 0.40 6.86 -51.92 -0.36 0.04 16 30 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 34 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 35 H 0.02 0.51 8.14 -51.92 -0.42 0.08 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.40 5.07 4.17 -40.82 -0.17 4.90 16 41 H 0.13 1.10 6.37 -52.48 -0.33 0.76 16 42 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.19 -0.22 8.06 -52.49 -0.42 -0.64 16 44 H 0.09 0.35 8.06 -52.48 -0.42 -0.07 16 45 H 0.15 2.42 6.97 -52.49 -0.37 2.05 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -37.11 372.23 -8.29 -45.40 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.87 Total: 1.39 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -3.56 Total: -11.20 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.37 Total: -39.76 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: 0.18 Total: -17.69 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.11 -8.29 -45.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935993624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.530 kcal (2) G-P(sol) polarization free energy of solvation -37.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.29 seconds