Wall clock time and date at job start Tue Mar 31 2020 15:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47037 * 2 1 4 4 C 1.52998 * 109.46847 * 239.99824 * 2 1 3 5 5 C 1.50698 * 109.47010 * 60.00506 * 4 2 1 6 6 H 1.08000 * 120.00030 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99643 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00151 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99729 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47428 * 59.99565 * 9 7 5 11 11 H 1.48507 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47184 * 299.99240 * 9 7 5 13 13 C 1.53003 * 109.46761 * 119.99659 * 2 1 3 14 14 N 1.46498 * 109.47552 * 300.00129 * 13 2 1 15 15 C 1.34774 * 119.99955 * 180.02562 * 14 13 2 16 16 O 1.21574 * 120.00340 * 0.02562 * 15 14 13 17 17 C 1.47672 * 120.00055 * 179.97438 * 15 14 13 18 18 C 1.40084 * 120.02830 * 0.02562 * 17 15 14 19 19 C 1.36379 * 120.63349 * 179.97438 * 18 17 15 20 20 C 1.39390 * 120.25995 * 359.80079 * 19 18 17 21 21 N 1.37735 * 132.85284 * 179.63891 * 20 19 18 22 22 H 0.97001 * 124.60586 * 0.63415 * 21 20 19 23 23 C 1.34733 * 110.79564 * 180.36055 * 21 20 19 24 24 C 1.37805 * 109.64706 * 0.22957 * 23 21 20 25 25 C 1.41745 * 126.94499 * 179.97438 * 24 23 21 26 26 O 1.21394 * 120.00376 * 180.02562 * 25 24 23 27 27 C 1.40551 * 119.52870 * 0.44132 * 20 19 18 28 28 C 1.38833 * 120.21685 * 359.53774 * 27 20 19 29 29 H 1.09009 * 109.47195 * 300.00214 * 1 2 3 30 30 H 1.09000 * 109.47167 * 59.99544 * 1 2 3 31 31 H 1.08994 * 109.47414 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47293 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47274 * 299.99806 * 3 2 1 34 34 H 1.09002 * 109.47118 * 60.00188 * 3 2 1 35 35 H 1.09007 * 109.46684 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.47180 * 299.99709 * 4 2 1 37 37 H 0.96996 * 120.00033 * 180.02562 * 8 7 5 38 38 H 1.08998 * 109.46760 * 179.97438 * 13 2 1 39 39 H 1.08998 * 109.46888 * 60.00422 * 13 2 1 40 40 H 0.96993 * 119.99673 * 0.02562 * 14 13 2 41 41 H 1.08004 * 119.68167 * 359.97438 * 18 17 15 42 42 H 1.07997 * 119.86617 * 180.02562 * 19 18 17 43 43 H 1.07995 * 125.17528 * 180.23292 * 23 21 20 44 44 H 1.08006 * 119.99680 * 0.02973 * 25 24 23 45 45 H 1.07997 * 120.28786 * 180.22329 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4796 6 1 0.9165 0.8671 -2.3805 7 6 1.8703 -0.4823 -3.7319 8 7 2.6263 -1.5516 -3.8526 9 14 1.2471 0.3979 -5.2571 10 1 1.7421 1.7980 -5.2576 11 1 1.7422 -0.3021 -6.4696 12 1 -0.2379 0.3979 -5.2567 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4455 15 6 1.8776 -0.4908 3.6696 16 8 2.5773 -1.4787 3.7812 17 6 1.3858 0.2057 4.8753 18 6 0.5800 1.3444 4.7475 19 6 0.1186 1.9968 5.8527 20 6 0.4413 1.5341 7.1273 21 7 0.1315 1.9816 8.3926 22 1 -0.4184 2.7577 8.5832 23 6 0.6909 1.1916 9.3297 24 6 1.4044 0.1829 8.7195 25 6 2.1360 -0.8497 9.3580 26 8 2.7227 -1.6786 8.6928 27 6 1.2534 0.3954 7.2659 28 6 1.7228 -0.2691 6.1409 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 -0.7217 -1.2490 36 1 1.6766 -1.7490 -1.2492 37 1 2.8606 -1.8830 -4.7335 38 1 3.1299 -0.7216 1.2491 39 1 1.6766 -1.7489 1.2493 40 1 0.9937 0.7578 2.3564 41 1 0.3216 1.7091 3.7643 42 1 -0.5022 2.8733 5.7397 43 1 0.5947 1.3281 10.3967 44 1 2.1714 -0.8991 10.4363 45 1 2.3440 -1.1463 6.2461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935993624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:54 Heat of formation + Delta-G solvation = -53.524864 kcal Electronic energy + Delta-G solvation = -26780.133504 eV Core-core repulsion = 22954.552199 eV Total energy + Delta-G solvation = -3825.581305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -42.56356 -41.02046 -39.44656 -38.79102 -37.68328 -35.31943 -33.99573 -33.20458 -31.12833 -30.50260 -29.07524 -27.96005 -27.70053 -25.46410 -25.21161 -24.06380 -23.34404 -21.59725 -20.73113 -19.88928 -19.02087 -18.43361 -18.30340 -17.41705 -17.10338 -16.52493 -16.48478 -16.40971 -15.90183 -15.71792 -15.27010 -15.16308 -15.12805 -14.75146 -14.65074 -14.63942 -14.35321 -13.94990 -13.83519 -13.76900 -13.41747 -12.86113 -12.74794 -12.70218 -12.55817 -12.32570 -12.24186 -12.13171 -12.00030 -11.54334 -11.28536 -10.93294 -10.83540 -10.82732 -10.59500 -10.50138 -10.18588 -9.42839 -8.88698 -8.12837 -6.21242 -0.37684 0.20030 0.69883 1.43130 1.45888 1.52995 1.80607 2.00767 2.13245 2.36487 2.45808 2.90038 3.21288 3.54615 3.64340 3.73270 3.88649 3.95434 4.06613 4.10718 4.19019 4.21879 4.35718 4.47535 4.60380 4.68623 4.69996 4.77369 4.91008 4.95999 5.08313 5.12552 5.12948 5.20773 5.32203 5.34564 5.39138 5.45427 5.50113 5.50277 5.52684 5.57109 5.80178 5.90020 5.91030 6.30124 6.49846 6.53850 6.88909 6.93697 7.18454 7.46440 8.99681 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028404 B = 0.002187 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.549746 B =12799.491334 C =13588.687879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.063 4.063 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.076 0.924 7 C -0.008 4.008 8 N -0.940 5.940 9 Si 0.962 3.038 10 H -0.265 1.265 11 H -0.293 1.293 12 H -0.265 1.265 13 C 0.140 3.860 14 N -0.699 5.699 15 C 0.549 3.451 16 O -0.595 6.595 17 C -0.161 4.161 18 C -0.079 4.079 19 C -0.104 4.104 20 C 0.093 3.907 21 N -0.545 5.545 22 H 0.447 0.553 23 C 0.201 3.799 24 C -0.342 4.342 25 C 0.399 3.601 26 O -0.546 6.546 27 C -0.102 4.102 28 C -0.040 4.040 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.060 0.940 34 H 0.071 0.929 35 H -0.016 1.016 36 H -0.016 1.016 37 H 0.259 0.741 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.414 0.586 41 H 0.156 0.844 42 H 0.175 0.825 43 H 0.255 0.745 44 H 0.151 0.849 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.793 16.671 32.267 38.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.064 4.064 3 C -0.180 4.180 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.094 0.906 7 C -0.205 4.205 8 N -0.581 5.581 9 Si 0.787 3.213 10 H -0.190 1.190 11 H -0.219 1.219 12 H -0.190 1.190 13 C 0.015 3.985 14 N -0.352 5.352 15 C 0.338 3.662 16 O -0.477 6.477 17 C -0.165 4.165 18 C -0.099 4.099 19 C -0.124 4.124 20 C -0.014 4.014 21 N -0.147 5.147 22 H 0.290 0.710 23 C 0.063 3.937 24 C -0.350 4.350 25 C 0.266 3.734 26 O -0.427 6.427 27 C -0.105 4.105 28 C -0.060 4.060 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.003 0.997 36 H 0.003 0.997 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.253 0.747 41 H 0.174 0.826 42 H 0.192 0.808 43 H 0.271 0.729 44 H 0.167 0.833 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.020 15.584 31.844 37.126 hybrid contribution 0.105 -0.157 -1.536 1.548 sum -10.915 15.427 30.307 35.716 Atomic orbital electron populations 1.21712 0.93315 1.01037 1.01902 1.20706 0.96915 0.96390 0.92340 1.21709 0.99913 0.94440 1.01901 1.18981 0.94233 0.94206 0.92456 1.21553 1.30480 1.12140 0.90881 0.90607 1.26008 0.95693 0.95894 1.02906 1.70130 1.38800 1.25051 1.24147 0.85545 0.78982 0.78716 0.78058 1.18998 1.21886 1.18990 1.21277 0.97800 0.95464 0.83912 1.45800 1.52949 1.32051 1.04352 1.18770 0.79539 0.83483 0.84377 1.90756 1.40584 1.28777 1.87576 1.19665 1.05176 1.00020 0.91617 1.20917 0.95493 0.92879 1.00615 1.20137 1.02551 1.02129 0.87537 1.18536 0.99530 0.95485 0.87812 1.41533 1.43208 1.27040 1.02901 0.70975 1.23474 0.87223 0.85864 0.97103 1.20831 1.15868 1.06766 0.91519 1.22641 0.74369 0.79810 0.96572 1.90602 1.40322 1.40358 1.71386 1.19199 1.00717 0.97029 0.93591 1.20582 0.96553 0.97959 0.90865 0.90999 0.92073 0.94586 0.94589 0.92071 0.90999 0.99747 0.99746 0.93213 0.93734 0.93737 0.74655 0.82614 0.80788 0.72914 0.83268 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.17 8.05 71.98 0.58 -3.59 16 2 C -0.06 -2.47 0.54 -52.18 -0.03 -2.49 16 3 C -0.12 -4.17 8.05 71.98 0.58 -3.59 16 4 C 0.04 2.04 4.04 29.85 0.12 2.16 16 5 C -0.51 -27.75 7.65 25.60 0.20 -27.55 16 6 H 0.08 3.78 5.68 -2.91 -0.02 3.76 16 7 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 8 N -0.94 -58.30 13.29 21.45 0.28 -58.01 16 9 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 13 C 0.14 5.45 4.56 86.38 0.39 5.85 16 14 N -0.70 -21.99 4.91 -466.14 -2.29 -24.28 16 15 C 0.55 19.86 7.77 86.74 0.67 20.53 16 16 O -0.59 -27.79 16.34 -3.95 -0.06 -27.86 16 17 C -0.16 -4.63 5.87 -20.08 -0.12 -4.75 16 18 C -0.08 -1.44 9.46 22.28 0.21 -1.23 16 19 C -0.10 -1.24 10.00 22.11 0.22 -1.02 16 20 C 0.09 1.24 7.24 39.06 0.28 1.52 16 21 N -0.55 -1.34 5.92 -186.37 -1.10 -2.44 16 22 H 0.45 -2.81 8.96 -92.71 -0.83 -3.64 16 23 C 0.20 0.33 11.82 84.15 0.99 1.32 16 24 C -0.34 -5.15 6.13 -20.02 -0.12 -5.28 16 25 C 0.40 6.89 11.44 68.69 0.79 7.68 16 26 O -0.55 -17.27 16.81 -3.38 -0.06 -17.33 16 27 C -0.10 -2.31 6.23 -20.08 -0.13 -2.43 16 28 C -0.04 -1.25 9.34 22.67 0.21 -1.04 16 29 H 0.07 1.81 6.86 -2.38 -0.02 1.79 16 30 H 0.06 2.18 6.62 -2.39 -0.02 2.16 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 2.18 6.62 -2.39 -0.02 2.16 16 34 H 0.07 1.81 6.86 -2.39 -0.02 1.79 16 35 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 36 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 37 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 38 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.41 9.73 4.17 -92.71 -0.39 9.34 16 41 H 0.16 1.95 6.37 -2.91 -0.02 1.93 16 42 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 43 H 0.26 -2.93 8.06 -2.91 -0.02 -2.96 16 44 H 0.15 0.68 8.06 -2.91 -0.02 0.65 16 45 H 0.10 3.96 6.97 -2.91 -0.02 3.94 16 Total: -1.00 -95.75 372.23 3.94 -91.81 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -0.17 Total: 6.10 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 5.32 Total: -13.91 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -3.11 Total: -84.74 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -0.12 Total: -45.18 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -95.75 3.94 -91.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935993624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.280 kcal (2) G-P(sol) polarization free energy of solvation -95.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds