Wall clock time and date at job start Tue Mar 31 2020 14:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32680 * 1 3 3 C 1.47669 * 119.99986 * 2 1 4 4 C 1.39706 * 119.99825 * 180.02562 * 3 2 1 5 5 C 1.37602 * 120.00685 * 180.02562 * 4 3 2 6 6 C 1.39748 * 119.99334 * 359.97135 * 5 4 3 7 7 C 1.47687 * 120.00136 * 179.97438 * 6 5 4 8 8 O 1.21581 * 119.99771 * 50.18494 * 7 6 5 9 9 N 1.34772 * 120.00067 * 230.17814 * 7 6 5 10 10 C 1.47127 * 121.05551 * 356.17570 * 9 7 6 11 11 C 1.53222 * 108.72272 * 127.77652 * 10 9 7 12 12 O 1.43113 * 109.34698 * 54.15785 * 11 10 9 13 13 C 1.42490 * 113.96997 * 300.04873 * 12 11 10 14 14 C 1.53446 * 113.78990 * 189.45299 * 13 12 11 15 15 N 1.47674 * 85.97866 * 91.24462 * 14 13 12 16 16 C 1.36930 * 134.45465 * 204.29156 * 15 14 13 17 17 H 1.08004 * 120.00048 * 179.97438 * 16 15 14 18 18 C 1.38816 * 120.00112 * 0.02562 * 16 15 14 19 19 N 1.31616 * 119.99914 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99854 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46915 * 59.99552 * 20 18 16 22 22 H 1.48497 * 109.46907 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46892 * 299.99768 * 20 18 16 24 24 C 1.47667 * 91.08781 * 24.29201 * 15 14 13 25 25 C 1.47339 * 121.05584 * 176.19560 * 9 7 6 26 26 C 1.39748 * 119.99017 * 0.25699 * 6 5 4 27 27 C 1.37596 * 119.99800 * 359.50976 * 26 6 5 28 28 H 1.07997 * 120.00139 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00181 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00181 * 180.02562 * 2 1 3 31 31 H 1.08001 * 119.99771 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.00616 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.59558 * 247.54777 * 10 9 7 34 34 H 1.09002 * 109.59168 * 8.00855 * 10 9 7 35 35 H 1.09000 * 109.49668 * 174.12417 * 11 10 9 36 36 H 1.09010 * 109.49182 * 294.19629 * 11 10 9 37 37 H 1.08997 * 113.79374 * 205.51135 * 14 13 12 38 38 H 1.09002 * 113.78718 * 336.97807 * 14 13 12 39 39 H 0.97001 * 119.99593 * 180.02562 * 19 18 16 40 40 H 1.08993 * 113.79395 * 221.44547 * 24 15 14 41 41 H 1.09003 * 113.89753 * 89.98857 * 24 15 14 42 42 H 1.09003 * 109.74194 * 108.71671 * 25 9 7 43 43 H 1.08999 * 109.78286 * 348.02253 * 25 9 7 44 44 H 1.08004 * 119.99589 * 179.72344 * 26 6 5 45 45 H 1.07996 * 119.99597 * 180.20922 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.4622 1.2788 -0.0005 5 6 4.1504 2.4704 0.0000 6 6 3.4517 3.6807 0.0005 7 6 4.1901 4.9597 0.0016 8 8 5.0783 5.1495 -0.8067 9 7 3.8794 5.9164 0.8985 10 6 2.7550 5.7454 1.8319 11 6 3.2555 6.0020 3.2571 12 8 3.8882 7.2844 3.3138 13 6 5.0073 7.4168 2.4418 14 6 5.8192 8.6992 2.6671 15 7 6.6296 7.8974 3.6058 16 6 7.4164 8.1921 4.6869 17 1 7.9181 7.3993 5.2219 18 6 7.5685 9.5099 5.0961 19 7 6.9568 10.4760 4.4445 20 14 8.6414 9.9118 6.5715 21 1 10.0302 9.4537 6.3131 22 1 8.6391 11.3791 6.8001 23 1 8.1083 9.2221 7.7737 24 6 6.2512 6.6503 2.9112 25 6 4.6546 7.1670 0.9752 26 6 2.0542 3.6805 0.0058 27 6 1.3664 2.4888 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8668 -0.9353 -0.0004 31 1 4.0021 0.3435 -0.0014 32 1 5.2303 2.4703 0.0000 33 1 1.9660 6.4567 1.5879 34 1 2.3695 4.7285 1.7573 35 1 2.4126 5.9814 3.9479 36 1 3.9730 5.2298 3.5352 37 1 6.3680 9.0326 1.7864 38 1 5.2542 9.4988 3.1461 39 1 7.0634 11.3968 4.7302 40 1 6.0295 5.8221 3.5841 41 1 6.9276 6.3725 2.1028 42 1 4.0566 7.9949 0.5941 43 1 5.5678 7.0716 0.3878 44 1 1.5141 4.6158 0.0107 45 1 0.2864 2.4887 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053440209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:40 Heat of formation + Delta-G solvation = 47.767790 kcal Electronic energy + Delta-G solvation = -27915.354905 eV Core-core repulsion = 24094.165978 eV Total energy + Delta-G solvation = -3821.188926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.78397 -39.51455 -38.32672 -36.26630 -34.68334 -34.36736 -32.25470 -31.48699 -30.30954 -29.75246 -27.86126 -26.21977 -25.09789 -24.15852 -23.54382 -22.81684 -21.84753 -20.34508 -19.68380 -18.85101 -17.61716 -16.90209 -16.78658 -16.22480 -15.74188 -15.65446 -15.15673 -15.01500 -14.61819 -14.40822 -14.24602 -14.07934 -13.74495 -13.68395 -13.35653 -13.32989 -13.11182 -12.66363 -12.48896 -12.26733 -11.96755 -11.70304 -11.37083 -11.25151 -11.13553 -10.84646 -10.79756 -10.75393 -10.69946 -10.21808 -10.09095 -9.67150 -9.62494 -9.29154 -9.27326 -8.80472 -8.58739 -8.29948 -6.86320 -5.73307 -3.05163 0.34630 1.06317 1.98069 2.66826 2.92171 3.42860 3.46277 3.47858 3.56311 4.06481 4.23785 4.39204 4.41998 4.47150 4.57495 4.84121 4.85091 4.95640 5.03994 5.06338 5.09415 5.17305 5.25701 5.32993 5.38128 5.48122 5.58534 5.66660 5.69973 5.76347 5.82445 5.86900 5.92386 6.04182 6.07363 6.15961 6.29677 6.35766 6.36936 6.49892 6.54450 6.60132 6.96978 7.19970 7.33611 7.52161 7.82421 8.00862 8.08916 9.06928 9.73465 10.59828 11.44188 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024982 B = 0.002635 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.524689 B =10624.232755 C =10721.091949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.121 4.121 3 C -0.045 4.045 4 C -0.111 4.111 5 C -0.068 4.068 6 C -0.119 4.119 7 C 0.559 3.441 8 O -0.533 6.533 9 N -0.603 5.603 10 C 0.064 3.936 11 C 0.045 3.955 12 O -0.335 6.335 13 C 0.053 3.947 14 C 0.183 3.817 15 N -0.602 5.602 16 C -0.221 4.221 17 H 0.079 0.921 18 C -0.007 4.007 19 N -0.921 5.921 20 Si 0.913 3.087 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.284 1.284 24 C 0.101 3.899 25 C 0.099 3.901 26 C -0.090 4.090 27 C -0.120 4.120 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.086 0.914 39 H 0.255 0.745 40 H 0.044 0.956 41 H 0.041 0.959 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.132 0.868 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.500 -18.677 -9.515 26.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.139 4.139 3 C -0.045 4.045 4 C -0.129 4.129 5 C -0.086 4.086 6 C -0.122 4.122 7 C 0.347 3.653 8 O -0.411 6.411 9 N -0.336 5.336 10 C -0.059 4.059 11 C -0.033 4.033 12 O -0.252 6.252 13 C 0.011 3.989 14 C 0.057 3.943 15 N -0.328 5.328 16 C -0.348 4.348 17 H 0.097 0.903 18 C -0.203 4.203 19 N -0.568 5.568 20 Si 0.744 3.256 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.211 1.211 24 C -0.025 4.025 25 C -0.024 4.024 26 C -0.108 4.108 27 C -0.138 4.138 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.138 0.862 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.150 0.850 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.916 -18.172 -9.569 25.383 hybrid contribution 0.661 -0.017 0.628 0.912 sum -14.255 -18.189 -8.942 24.779 Atomic orbital electron populations 1.24450 0.95670 1.02446 0.98542 1.21833 0.95268 0.95748 1.01033 1.19276 0.93358 0.93253 0.98591 1.21214 0.93195 0.98105 1.00417 1.21118 1.00521 0.90715 0.96289 1.19989 0.94006 0.93691 1.04552 1.18332 0.82999 0.83223 0.80765 1.90806 1.31810 1.80173 1.38282 1.48154 1.32295 1.18312 1.34809 1.22751 0.89188 1.03340 0.90660 1.22886 0.97792 0.87826 0.94816 1.88056 1.43788 1.30937 1.62439 1.23782 0.86340 1.02457 0.86347 1.22210 0.88279 0.91768 0.92054 1.45737 1.56330 1.00963 1.29744 1.18919 1.21181 0.92324 1.02390 0.90341 1.24766 1.00671 0.95382 0.99514 1.69783 1.46332 0.99218 1.41493 0.86183 0.80064 0.77115 0.82280 1.21226 1.21522 1.21106 1.23039 0.92613 0.91934 0.94907 1.22357 0.97335 0.84509 0.98211 1.21246 0.92696 0.98717 0.98165 1.21207 1.00069 0.91386 1.01092 0.87623 0.87900 0.86202 0.85124 0.84949 0.90298 0.88431 0.88034 0.92807 0.93791 0.89603 0.93537 0.93821 0.94139 0.90620 0.87934 0.85034 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 14.15 28.84 0.41 -0.52 16 2 C -0.12 -0.78 9.90 -37.62 -0.37 -1.16 16 3 C -0.04 -0.37 5.87 -104.95 -0.62 -0.99 16 4 C -0.11 -0.99 9.76 -39.27 -0.38 -1.37 16 5 C -0.07 -0.74 9.71 -39.25 -0.38 -1.12 16 6 C -0.12 -1.43 5.04 -104.91 -0.53 -1.96 16 7 C 0.56 8.41 7.24 -12.40 -0.09 8.32 16 8 O -0.53 -9.91 16.55 5.29 0.09 -9.82 16 9 N -0.60 -8.70 3.03 -173.60 -0.53 -9.23 16 10 C 0.06 0.73 5.47 -3.58 -0.02 0.71 16 11 C 0.04 0.62 6.88 37.27 0.26 0.88 16 12 O -0.33 -6.46 10.52 -35.23 -0.37 -6.83 16 13 C 0.05 1.04 1.21 -90.30 -0.11 0.93 16 14 C 0.18 4.39 6.90 -3.18 -0.02 4.37 16 15 N -0.60 -15.99 3.70 -180.29 -0.67 -16.65 16 16 C -0.22 -6.37 10.70 -15.06 -0.16 -6.53 16 17 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 19 N -0.92 -27.68 11.39 55.49 0.63 -27.05 16 20 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 24 C 0.10 2.21 8.08 -3.17 -0.03 2.18 16 25 C 0.10 1.63 5.76 -3.64 -0.02 1.61 16 26 C -0.09 -0.84 7.35 -39.25 -0.29 -1.13 16 27 C -0.12 -0.97 9.38 -39.26 -0.37 -1.34 16 28 H 0.11 0.40 8.06 -52.49 -0.42 -0.02 16 29 H 0.10 0.48 6.02 -52.49 -0.32 0.16 16 30 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.92 4.65 -51.93 -0.24 0.68 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.78 7.20 -51.92 -0.37 0.41 16 37 H 0.04 1.04 8.09 -51.93 -0.42 0.62 16 38 H 0.09 2.30 7.17 -51.93 -0.37 1.92 16 39 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.04 0.93 7.28 -51.93 -0.38 0.55 16 41 H 0.04 0.87 7.94 -51.93 -0.41 0.46 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.10 1.81 6.94 -51.93 -0.36 1.45 16 44 H 0.13 1.05 7.01 -52.48 -0.37 0.68 16 45 H 0.13 0.75 6.15 -52.49 -0.32 0.43 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -34.79 366.23 -9.24 -44.02 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.07 Total: -0.10 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -2.82 Total: 2.60 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.56 Total: -52.93 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.28 Total: -16.65 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.79 -9.24 -44.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053440209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.790 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds