Wall clock time and date at job start Tue Mar 31 2020 14:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32680 * 1 3 3 C 1.47669 * 119.99986 * 2 1 4 4 C 1.39706 * 119.99825 * 180.02562 * 3 2 1 5 5 C 1.37602 * 120.00685 * 180.02562 * 4 3 2 6 6 C 1.39748 * 119.99334 * 359.97135 * 5 4 3 7 7 C 1.47687 * 120.00136 * 179.97438 * 6 5 4 8 8 O 1.21581 * 119.99771 * 50.18494 * 7 6 5 9 9 N 1.34772 * 120.00067 * 230.17814 * 7 6 5 10 10 C 1.47127 * 121.05551 * 356.17570 * 9 7 6 11 11 C 1.53222 * 108.72272 * 127.77652 * 10 9 7 12 12 O 1.43113 * 109.34698 * 54.15785 * 11 10 9 13 13 C 1.42490 * 113.96997 * 300.04873 * 12 11 10 14 14 C 1.53446 * 113.78990 * 189.45299 * 13 12 11 15 15 N 1.47674 * 85.97866 * 91.24462 * 14 13 12 16 16 C 1.36930 * 134.45465 * 204.29156 * 15 14 13 17 17 H 1.08004 * 120.00048 * 179.97438 * 16 15 14 18 18 C 1.38816 * 120.00112 * 0.02562 * 16 15 14 19 19 N 1.31616 * 119.99914 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99854 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46915 * 59.99552 * 20 18 16 22 22 H 1.48497 * 109.46907 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46892 * 299.99768 * 20 18 16 24 24 C 1.47667 * 91.08781 * 24.29201 * 15 14 13 25 25 C 1.47339 * 121.05584 * 176.19560 * 9 7 6 26 26 C 1.39748 * 119.99017 * 0.25699 * 6 5 4 27 27 C 1.37596 * 119.99800 * 359.50976 * 26 6 5 28 28 H 1.07997 * 120.00139 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00181 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00181 * 180.02562 * 2 1 3 31 31 H 1.08001 * 119.99771 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.00616 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.59558 * 247.54777 * 10 9 7 34 34 H 1.09002 * 109.59168 * 8.00855 * 10 9 7 35 35 H 1.09000 * 109.49668 * 174.12417 * 11 10 9 36 36 H 1.09010 * 109.49182 * 294.19629 * 11 10 9 37 37 H 1.08997 * 113.79374 * 205.51135 * 14 13 12 38 38 H 1.09002 * 113.78718 * 336.97807 * 14 13 12 39 39 H 0.97001 * 119.99593 * 180.02562 * 19 18 16 40 40 H 1.08993 * 113.79395 * 221.44547 * 24 15 14 41 41 H 1.09003 * 113.89753 * 89.98857 * 24 15 14 42 42 H 1.09003 * 109.74194 * 108.71671 * 25 9 7 43 43 H 1.08999 * 109.78286 * 348.02253 * 25 9 7 44 44 H 1.08004 * 119.99589 * 179.72344 * 26 6 5 45 45 H 1.07996 * 119.99597 * 180.20922 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.4622 1.2788 -0.0005 5 6 4.1504 2.4704 0.0000 6 6 3.4517 3.6807 0.0005 7 6 4.1901 4.9597 0.0016 8 8 5.0783 5.1495 -0.8067 9 7 3.8794 5.9164 0.8985 10 6 2.7550 5.7454 1.8319 11 6 3.2555 6.0020 3.2571 12 8 3.8882 7.2844 3.3138 13 6 5.0073 7.4168 2.4418 14 6 5.8192 8.6992 2.6671 15 7 6.6296 7.8974 3.6058 16 6 7.4164 8.1921 4.6869 17 1 7.9181 7.3993 5.2219 18 6 7.5685 9.5099 5.0961 19 7 6.9568 10.4760 4.4445 20 14 8.6414 9.9118 6.5715 21 1 10.0302 9.4537 6.3131 22 1 8.6391 11.3791 6.8001 23 1 8.1083 9.2221 7.7737 24 6 6.2512 6.6503 2.9112 25 6 4.6546 7.1670 0.9752 26 6 2.0542 3.6805 0.0058 27 6 1.3664 2.4888 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8668 -0.9353 -0.0004 31 1 4.0021 0.3435 -0.0014 32 1 5.2303 2.4703 0.0000 33 1 1.9660 6.4567 1.5879 34 1 2.3695 4.7285 1.7573 35 1 2.4126 5.9814 3.9479 36 1 3.9730 5.2298 3.5352 37 1 6.3680 9.0326 1.7864 38 1 5.2542 9.4988 3.1461 39 1 7.0634 11.3968 4.7302 40 1 6.0295 5.8221 3.5841 41 1 6.9276 6.3725 2.1028 42 1 4.0566 7.9949 0.5941 43 1 5.5678 7.0716 0.3878 44 1 1.5141 4.6158 0.0107 45 1 0.2864 2.4887 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053440209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:39 Heat of formation + Delta-G solvation = 25.459086 kcal Electronic energy + Delta-G solvation = -27916.322283 eV Core-core repulsion = 24094.165978 eV Total energy + Delta-G solvation = -3822.156304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.97584 -40.69887 -39.39996 -37.81966 -35.89042 -35.09363 -34.27563 -32.29296 -31.53218 -30.65615 -29.36770 -27.80828 -26.92200 -25.07651 -24.75199 -23.76707 -23.29651 -21.26632 -20.55311 -20.28667 -18.84324 -18.64866 -17.81084 -17.44894 -17.08213 -16.76782 -16.59478 -16.13899 -15.90195 -15.67800 -15.48784 -15.13344 -15.00991 -14.93344 -14.45398 -14.28118 -14.14858 -14.04353 -13.79667 -13.35256 -13.19824 -13.05358 -12.89448 -12.74976 -12.51265 -12.29422 -12.14442 -11.97791 -11.80456 -11.73097 -11.56852 -11.31552 -11.02068 -10.88898 -10.82391 -9.97884 -9.65065 -9.16323 -8.97342 -7.92587 -5.26954 -0.33660 0.38402 1.30880 1.43481 1.47916 1.54065 1.62247 1.90564 2.44520 2.64981 2.87557 3.20977 3.29387 3.34004 3.52635 3.75393 3.79618 3.85071 3.90399 3.99479 4.09666 4.23466 4.33747 4.36544 4.39898 4.46810 4.49994 4.61465 4.63682 4.69033 4.76212 4.83156 4.88559 4.96699 5.03204 5.12089 5.17976 5.19587 5.25519 5.36475 5.36851 5.44279 5.68957 5.83900 5.87558 5.92470 6.21591 6.34539 6.87530 6.94421 7.55855 8.49079 9.24253 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024982 B = 0.002635 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.524689 B =10624.232755 C =10721.091949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.144 4.144 3 C -0.040 4.040 4 C -0.116 4.116 5 C -0.083 4.083 6 C -0.145 4.145 7 C 0.558 3.442 8 O -0.579 6.579 9 N -0.603 5.603 10 C 0.069 3.931 11 C 0.037 3.963 12 O -0.363 6.363 13 C 0.084 3.916 14 C 0.178 3.822 15 N -0.631 5.631 16 C -0.240 4.240 17 H 0.080 0.920 18 C -0.064 4.064 19 N -0.951 5.951 20 Si 0.983 3.017 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.276 1.276 24 C 0.103 3.897 25 C 0.108 3.892 26 C -0.085 4.085 27 C -0.119 4.119 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.131 0.869 31 H 0.149 0.851 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.045 0.955 37 H 0.041 0.959 38 H 0.053 0.947 39 H 0.251 0.749 40 H 0.048 0.952 41 H 0.043 0.957 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.149 0.851 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.269 -21.065 -9.320 29.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 C -0.040 4.040 4 C -0.134 4.134 5 C -0.102 4.102 6 C -0.148 4.148 7 C 0.349 3.651 8 O -0.460 6.460 9 N -0.335 5.335 10 C -0.052 4.052 11 C -0.039 4.039 12 O -0.281 6.281 13 C 0.042 3.958 14 C 0.052 3.948 15 N -0.358 5.358 16 C -0.368 4.368 17 H 0.098 0.902 18 C -0.258 4.258 19 N -0.599 5.599 20 Si 0.810 3.190 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.201 1.201 24 C -0.023 4.023 25 C -0.015 4.015 26 C -0.104 4.104 27 C -0.136 4.136 28 H 0.140 0.860 29 H 0.130 0.870 30 H 0.148 0.852 31 H 0.167 0.833 32 H 0.138 0.862 33 H 0.120 0.880 34 H 0.143 0.857 35 H 0.152 0.848 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.166 0.834 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.720 -20.606 -9.371 28.747 hybrid contribution 1.398 0.563 0.557 1.606 sum -16.322 -20.044 -8.813 27.310 Atomic orbital electron populations 1.24747 0.95292 1.03754 0.95524 1.21920 0.95847 0.95300 1.03117 1.19609 0.93220 0.94450 0.96695 1.21411 0.93859 0.97955 1.00166 1.21146 1.00214 0.91479 0.97315 1.19811 0.95076 0.91995 1.07876 1.18870 0.82405 0.83975 0.79869 1.90771 1.34003 1.81051 1.40170 1.48201 1.32636 1.17342 1.35275 1.22938 0.88404 1.05701 0.88206 1.23246 0.98223 0.85108 0.97364 1.88000 1.43380 1.34022 1.62709 1.23139 0.85934 0.98426 0.88255 1.22106 0.88820 0.92738 0.91150 1.46105 1.56380 1.03287 1.30013 1.19312 1.21379 0.92747 1.03370 0.90201 1.25663 1.02294 0.95219 1.02578 1.69983 1.47698 0.99195 1.43057 0.85096 0.78418 0.76577 0.78864 1.20355 1.21610 1.20147 1.23132 0.93742 0.90877 0.94539 1.22029 0.97655 0.86431 0.95432 1.21404 0.91405 1.00130 0.97436 1.21533 1.01465 0.90611 1.00039 0.85969 0.87019 0.85155 0.83321 0.86232 0.87986 0.85673 0.84806 0.93706 0.94183 0.92848 0.94013 0.93415 0.93942 0.89061 0.89418 0.83362 0.82270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 14.15 66.65 0.94 -0.05 16 2 C -0.14 -1.37 9.90 23.59 0.23 -1.13 16 3 C -0.04 -0.54 5.87 -20.07 -0.12 -0.66 16 4 C -0.12 -1.87 9.76 22.47 0.22 -1.65 16 5 C -0.08 -1.79 9.71 22.48 0.22 -1.57 16 6 C -0.14 -3.31 5.04 -20.05 -0.10 -3.41 16 7 C 0.56 16.77 7.24 86.74 0.63 17.40 16 8 O -0.58 -22.24 16.55 -3.97 -0.07 -22.31 16 9 N -0.60 -16.88 3.03 -821.42 -2.49 -19.36 16 10 C 0.07 1.41 5.47 86.33 0.47 1.88 16 11 C 0.04 0.97 6.88 72.06 0.50 1.47 16 12 O -0.36 -13.89 10.52 -148.98 -1.57 -15.46 16 13 C 0.08 3.39 1.21 -10.49 -0.01 3.37 16 14 C 0.18 8.93 6.90 86.30 0.60 9.52 16 15 N -0.63 -34.71 3.70 -729.18 -2.70 -37.41 16 16 C -0.24 -14.23 10.70 84.04 0.90 -13.33 16 17 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 18 C -0.06 -3.80 5.50 84.86 0.47 -3.34 16 19 N -0.95 -59.00 11.39 21.65 0.25 -58.76 16 20 Si 0.98 47.14 29.55 68.60 2.03 49.17 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 C 0.10 4.59 8.08 86.31 0.70 5.29 16 25 C 0.11 3.62 5.76 86.18 0.50 4.11 16 26 C -0.09 -1.36 7.35 22.48 0.17 -1.20 16 27 C -0.12 -1.49 9.38 22.48 0.21 -1.27 16 28 H 0.12 0.39 8.06 -2.91 -0.02 0.37 16 29 H 0.11 0.49 6.02 -2.91 -0.02 0.48 16 30 H 0.13 0.93 8.06 -2.91 -0.02 0.90 16 31 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.12 2.77 8.06 -2.91 -0.02 2.74 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.13 1.92 4.65 -2.39 -0.01 1.91 16 35 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.04 1.25 7.20 -2.38 -0.02 1.23 16 37 H 0.04 2.01 8.09 -2.39 -0.02 1.99 16 38 H 0.05 3.01 7.17 -2.39 -0.02 2.99 16 39 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.05 2.07 7.28 -2.39 -0.02 2.05 16 41 H 0.04 1.89 7.94 -2.39 -0.02 1.88 16 42 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.09 3.22 6.94 -2.39 -0.02 3.20 16 44 H 0.15 1.80 7.01 -2.91 -0.02 1.78 16 45 H 0.16 1.04 6.15 -2.91 -0.02 1.02 16 Total: -1.00 -78.83 366.23 2.97 -75.86 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 1.00 Total: 12.82 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 6.51 Total: 15.44 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -4.94 Total: -115.53 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.63 Total: -37.77 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -78.83 2.97 -75.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053440209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.320 kcal (2) G-P(sol) polarization free energy of solvation -78.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds