Wall clock time and date at job start Tue Mar 31 2020 14:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32683 * 1 3 3 C 1.47667 * 120.00214 * 2 1 4 4 C 1.39710 * 119.99915 * 180.02562 * 3 2 1 5 5 C 1.37601 * 120.00464 * 180.02562 * 4 3 2 6 6 C 1.39744 * 119.99643 * 359.97438 * 5 4 3 7 7 C 1.47686 * 120.00338 * 179.97438 * 6 5 4 8 8 O 1.21572 * 119.99995 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99705 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99679 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.93307 * 31.35424 * 10 9 7 12 12 C 1.55051 * 110.87826 * 267.70331 * 10 9 7 13 13 O 1.44569 * 103.63870 * 278.44480 * 12 10 9 14 14 C 1.42970 * 106.77152 * 320.75220 * 13 12 10 15 15 C 1.53212 * 115.36762 * 156.24244 * 14 13 12 16 16 N 1.47718 * 85.90018 * 93.48407 * 15 14 13 17 17 C 1.36944 * 134.43134 * 204.12547 * 16 15 14 18 18 H 1.08001 * 119.99745 * 179.97438 * 17 16 15 19 19 C 1.38807 * 120.00202 * 359.97438 * 17 16 15 20 20 N 1.31621 * 119.99836 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00005 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47004 * 90.00231 * 21 19 17 23 23 H 1.48502 * 109.46988 * 210.00183 * 21 19 17 24 24 H 1.48502 * 109.47283 * 330.00035 * 21 19 17 25 25 C 1.47720 * 91.13528 * 24.11838 * 16 15 14 26 26 C 1.53436 * 108.17027 * 25.82526 * 14 13 12 27 27 C 1.39750 * 119.99153 * 0.25273 * 6 5 4 28 28 C 1.37606 * 119.99355 * 359.51212 * 27 6 5 29 29 H 1.07996 * 120.00231 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99778 * 359.97438 * 1 2 3 31 31 H 1.08001 * 119.99778 * 180.02562 * 2 1 3 32 32 H 1.07999 * 119.99562 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.00116 * 179.97438 * 5 4 3 34 34 H 0.96996 * 120.00339 * 0.02562 * 9 7 6 35 35 H 1.09002 * 110.59346 * 159.90410 * 12 10 9 36 36 H 1.09002 * 110.71770 * 37.03939 * 12 10 9 37 37 H 1.09003 * 113.80520 * 207.72147 * 15 14 13 38 38 H 1.09001 * 113.80837 * 339.23534 * 15 14 13 39 39 H 0.97005 * 119.99866 * 179.97438 * 20 19 17 40 40 H 1.09000 * 113.80417 * 221.63999 * 25 16 15 41 41 H 1.08996 * 113.91259 * 90.14325 * 25 16 15 42 42 H 1.09002 * 110.55081 * 116.90821 * 26 14 13 43 43 H 1.08998 * 110.55704 * 239.72496 * 26 14 13 44 44 H 1.07997 * 120.00014 * 179.72543 * 27 6 5 45 45 H 1.08000 * 119.99391 * 180.21107 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 3.4623 1.2787 -0.0005 5 6 4.1505 2.4703 0.0000 6 6 3.4518 3.6806 0.0005 7 6 4.1903 4.9596 0.0017 8 8 5.4060 4.9595 0.0026 9 7 3.5164 6.1267 0.0017 10 6 4.2489 7.3954 0.0034 11 1 5.1971 7.2983 -0.5253 12 6 4.4732 7.9020 1.4515 13 8 3.2211 8.5422 1.7865 14 6 2.7843 9.2332 0.6136 15 6 1.2773 9.4968 0.5300 16 7 1.5794 10.8054 1.1450 17 6 0.8604 11.7057 1.8852 18 1 1.3264 12.6181 2.2271 19 6 -0.4671 11.4457 2.1960 20 7 -1.0348 10.3335 1.7798 21 14 -1.4480 12.6741 3.2051 22 1 -2.1097 13.6446 2.2967 23 1 -2.4785 11.9543 3.9959 24 1 -0.5356 13.3997 4.1251 25 6 2.9675 10.7543 0.6422 26 6 3.3890 8.5304 -0.6089 27 6 2.0544 3.6805 0.0059 28 6 1.3665 2.4887 0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8668 -0.9353 -0.0004 32 1 4.0022 0.3434 -0.0014 33 1 5.2305 2.4702 0.0000 34 1 2.5464 6.1267 0.0013 35 1 5.2920 8.6209 1.4837 36 1 4.6698 7.0683 2.1256 37 1 0.8988 9.5669 -0.4898 38 1 0.6800 8.8405 1.1631 39 1 -1.9625 10.1516 1.9974 40 1 3.7098 11.0945 1.3642 41 1 3.0969 11.2004 -0.3438 42 1 2.6027 8.1166 -1.2403 43 1 4.0137 9.2200 -1.1767 44 1 1.5143 4.6157 0.0108 45 1 0.2865 2.4886 0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053935447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:12 Heat of formation + Delta-G solvation = 32.637119 kcal Electronic energy + Delta-G solvation = -27197.983489 eV Core-core repulsion = 23376.138448 eV Total energy + Delta-G solvation = -3821.845041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.59329 -39.70104 -38.50682 -36.17331 -34.53800 -34.25172 -32.08375 -31.55114 -30.62171 -29.54974 -28.08274 -25.70143 -24.99492 -24.58670 -22.95856 -22.28047 -21.39568 -20.66246 -19.89097 -19.02132 -18.19932 -16.91814 -16.69570 -16.23111 -15.51908 -15.34032 -15.10171 -15.00968 -14.82014 -14.43134 -14.32386 -14.01847 -13.58627 -13.44548 -13.42448 -13.18436 -13.01367 -12.58278 -12.54255 -12.04238 -11.62872 -11.50891 -11.42437 -11.34278 -11.15985 -11.12207 -10.82604 -10.68489 -10.61317 -10.27282 -9.96988 -9.72022 -9.56652 -9.28978 -9.26247 -8.82736 -8.72389 -8.51936 -6.86572 -5.74566 -3.05584 0.28674 1.13118 1.94107 2.89390 3.06492 3.41048 3.45868 3.48003 3.72343 4.24135 4.33101 4.42300 4.47035 4.56227 4.65687 4.72844 4.87729 5.02734 5.03017 5.05113 5.13041 5.23038 5.35594 5.37293 5.46202 5.54122 5.58085 5.71705 5.77945 5.88649 5.90933 5.93493 5.97987 6.07402 6.09810 6.21155 6.33812 6.40602 6.43380 6.54843 6.60397 6.64421 6.89542 7.18979 7.44494 7.51539 7.72095 8.00528 8.12254 9.06674 9.73177 10.60396 11.43133 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013581 B = 0.002788 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.191569 B =10040.143201 C =11733.537291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.126 4.126 3 C -0.036 4.036 4 C -0.120 4.120 5 C -0.058 4.058 6 C -0.135 4.135 7 C 0.559 3.441 8 O -0.543 6.543 9 N -0.707 5.707 10 C 0.111 3.889 11 H 0.105 0.895 12 C 0.034 3.966 13 O -0.332 6.332 14 C 0.054 3.946 15 C 0.172 3.828 16 N -0.604 5.604 17 C -0.218 4.218 18 H 0.079 0.921 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.104 3.896 26 C -0.148 4.148 27 C -0.079 4.079 28 C -0.122 4.122 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.405 0.595 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.080 0.920 39 H 0.253 0.747 40 H 0.048 0.952 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.132 0.868 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.507 -19.403 -7.069 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.037 4.037 4 C -0.138 4.138 5 C -0.077 4.077 6 C -0.138 4.138 7 C 0.347 3.653 8 O -0.422 6.422 9 N -0.359 5.359 10 C 0.006 3.994 11 H 0.123 0.877 12 C -0.044 4.044 13 O -0.250 6.250 14 C 0.013 3.987 15 C 0.047 3.953 16 N -0.330 5.330 17 C -0.346 4.346 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.570 5.570 21 Si 0.743 3.257 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.022 4.022 26 C -0.187 4.187 27 C -0.098 4.098 28 C -0.140 4.140 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.148 0.852 33 H 0.155 0.845 34 H 0.242 0.758 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.150 0.850 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.970 -19.234 -6.677 21.864 hybrid contribution -1.016 0.753 0.317 1.304 sum 6.953 -18.482 -6.359 20.745 Atomic orbital electron populations 1.24507 0.95699 1.02620 0.97808 1.21831 0.95285 0.95702 1.01535 1.19334 0.93427 0.93288 0.97603 1.21220 0.93159 0.98160 1.01295 1.21193 1.00796 0.90706 0.95020 1.20020 0.93690 0.93647 1.06399 1.18255 0.87212 0.83765 0.76078 1.90758 1.13371 1.87686 1.50383 1.45883 1.10704 1.05004 1.74275 1.22550 0.96532 0.82854 0.97489 0.87700 1.23979 0.88605 0.96811 0.94998 1.88933 1.35895 1.67213 1.32990 1.23861 0.99321 0.92328 0.83195 1.22353 0.88852 0.87771 0.96357 1.45774 1.07333 1.20974 1.58950 1.18991 0.92617 0.98807 1.24164 0.90275 1.24754 0.96671 0.97891 1.01165 1.69801 1.12507 1.24656 1.50012 0.86110 0.79849 0.80121 0.79638 1.21683 1.21625 1.20648 1.23016 0.89679 0.92491 0.97020 1.23163 0.99824 0.96581 0.99092 1.21327 0.93012 0.98799 0.96643 1.21260 1.00344 0.91408 1.00997 0.87563 0.87718 0.86199 0.85197 0.84509 0.75848 0.91508 0.89281 0.94380 0.90186 0.93722 0.93378 0.94068 0.89630 0.89212 0.85047 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 14.15 28.84 0.41 -0.65 16 2 C -0.13 -0.89 9.90 -37.62 -0.37 -1.26 16 3 C -0.04 -0.32 5.87 -104.95 -0.62 -0.94 16 4 C -0.12 -1.07 9.76 -39.26 -0.38 -1.45 16 5 C -0.06 -0.62 9.57 -39.25 -0.38 -1.00 16 6 C -0.13 -1.58 5.88 -104.91 -0.62 -2.19 16 7 C 0.56 7.62 7.77 -12.40 -0.10 7.52 16 8 O -0.54 -8.85 15.98 5.30 0.08 -8.76 16 9 N -0.71 -9.03 5.10 -52.73 -0.27 -9.30 16 10 C 0.11 1.48 3.51 -65.79 -0.23 1.25 16 11 H 0.11 1.35 7.55 -51.93 -0.39 0.96 16 12 C 0.03 0.52 7.42 38.24 0.28 0.80 16 13 O -0.33 -6.54 11.29 -35.23 -0.40 -6.94 16 14 C 0.05 1.01 1.53 -90.28 -0.14 0.87 16 15 C 0.17 3.98 6.90 -3.27 -0.02 3.96 16 16 N -0.60 -15.76 3.70 -181.59 -0.67 -16.44 16 17 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 18 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 20 N -0.92 -27.38 11.39 55.49 0.63 -26.75 16 21 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.10 2.15 8.34 -3.26 -0.03 2.12 16 26 C -0.15 -2.03 6.13 -25.45 -0.16 -2.18 16 27 C -0.08 -0.81 9.52 -39.25 -0.37 -1.18 16 28 C -0.12 -1.13 9.38 -39.26 -0.37 -1.50 16 29 H 0.11 0.49 8.06 -52.49 -0.42 0.07 16 30 H 0.10 0.63 6.02 -52.49 -0.32 0.31 16 31 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.14 1.42 7.64 -52.49 -0.40 1.02 16 34 H 0.41 4.74 6.64 -40.82 -0.27 4.47 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.04 0.86 8.10 -51.93 -0.42 0.44 16 38 H 0.08 2.09 7.18 -51.93 -0.37 1.71 16 39 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 42 H 0.09 1.10 7.81 -51.93 -0.41 0.69 16 43 H 0.09 1.08 7.89 -51.93 -0.41 0.67 16 44 H 0.13 1.18 6.38 -52.49 -0.34 0.85 16 45 H 0.13 0.99 6.15 -52.49 -0.32 0.67 16 LS Contribution 374.34 15.07 5.64 5.64 Total: -1.00 -34.46 374.34 -9.50 -43.96 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.15 Total: 3.77 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -3.34 Total: -2.60 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.31 Total: -52.48 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.31 Total: -15.71 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.46 -9.50 -43.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053935447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.596 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds