Wall clock time and date at job start Tue Mar 31 2020 14:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32683 * 1 3 3 C 1.47667 * 120.00214 * 2 1 4 4 C 1.39710 * 119.99915 * 180.02562 * 3 2 1 5 5 C 1.37601 * 120.00464 * 180.02562 * 4 3 2 6 6 C 1.39744 * 119.99643 * 359.97438 * 5 4 3 7 7 C 1.47686 * 120.00338 * 179.97438 * 6 5 4 8 8 O 1.21572 * 119.99995 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99705 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99679 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.93307 * 31.35424 * 10 9 7 12 12 C 1.55051 * 110.87826 * 267.70331 * 10 9 7 13 13 O 1.44569 * 103.63870 * 278.44480 * 12 10 9 14 14 C 1.42970 * 106.77152 * 320.75220 * 13 12 10 15 15 C 1.53212 * 115.36762 * 156.24244 * 14 13 12 16 16 N 1.47718 * 85.90018 * 93.48407 * 15 14 13 17 17 C 1.36944 * 134.43134 * 204.12547 * 16 15 14 18 18 H 1.08001 * 119.99745 * 179.97438 * 17 16 15 19 19 C 1.38807 * 120.00202 * 359.97438 * 17 16 15 20 20 N 1.31621 * 119.99836 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00005 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47004 * 90.00231 * 21 19 17 23 23 H 1.48502 * 109.46988 * 210.00183 * 21 19 17 24 24 H 1.48502 * 109.47283 * 330.00035 * 21 19 17 25 25 C 1.47720 * 91.13528 * 24.11838 * 16 15 14 26 26 C 1.53436 * 108.17027 * 25.82526 * 14 13 12 27 27 C 1.39750 * 119.99153 * 0.25273 * 6 5 4 28 28 C 1.37606 * 119.99355 * 359.51212 * 27 6 5 29 29 H 1.07996 * 120.00231 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99778 * 359.97438 * 1 2 3 31 31 H 1.08001 * 119.99778 * 180.02562 * 2 1 3 32 32 H 1.07999 * 119.99562 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.00116 * 179.97438 * 5 4 3 34 34 H 0.96996 * 120.00339 * 0.02562 * 9 7 6 35 35 H 1.09002 * 110.59346 * 159.90410 * 12 10 9 36 36 H 1.09002 * 110.71770 * 37.03939 * 12 10 9 37 37 H 1.09003 * 113.80520 * 207.72147 * 15 14 13 38 38 H 1.09001 * 113.80837 * 339.23534 * 15 14 13 39 39 H 0.97005 * 119.99866 * 179.97438 * 20 19 17 40 40 H 1.09000 * 113.80417 * 221.63999 * 25 16 15 41 41 H 1.08996 * 113.91259 * 90.14325 * 25 16 15 42 42 H 1.09002 * 110.55081 * 116.90821 * 26 14 13 43 43 H 1.08998 * 110.55704 * 239.72496 * 26 14 13 44 44 H 1.07997 * 120.00014 * 179.72543 * 27 6 5 45 45 H 1.08000 * 119.99391 * 180.21107 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 3.4623 1.2787 -0.0005 5 6 4.1505 2.4703 0.0000 6 6 3.4518 3.6806 0.0005 7 6 4.1903 4.9596 0.0017 8 8 5.4060 4.9595 0.0026 9 7 3.5164 6.1267 0.0017 10 6 4.2489 7.3954 0.0034 11 1 5.1971 7.2983 -0.5253 12 6 4.4732 7.9020 1.4515 13 8 3.2211 8.5422 1.7865 14 6 2.7843 9.2332 0.6136 15 6 1.2773 9.4968 0.5300 16 7 1.5794 10.8054 1.1450 17 6 0.8604 11.7057 1.8852 18 1 1.3264 12.6181 2.2271 19 6 -0.4671 11.4457 2.1960 20 7 -1.0348 10.3335 1.7798 21 14 -1.4480 12.6741 3.2051 22 1 -2.1097 13.6446 2.2967 23 1 -2.4785 11.9543 3.9959 24 1 -0.5356 13.3997 4.1251 25 6 2.9675 10.7543 0.6422 26 6 3.3890 8.5304 -0.6089 27 6 2.0544 3.6805 0.0059 28 6 1.3665 2.4887 0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8668 -0.9353 -0.0004 32 1 4.0022 0.3434 -0.0014 33 1 5.2305 2.4702 0.0000 34 1 2.5464 6.1267 0.0013 35 1 5.2920 8.6209 1.4837 36 1 4.6698 7.0683 2.1256 37 1 0.8988 9.5669 -0.4898 38 1 0.6800 8.8405 1.1631 39 1 -1.9625 10.1516 1.9974 40 1 3.7098 11.0945 1.3642 41 1 3.0969 11.2004 -0.3438 42 1 2.6027 8.1166 -1.2403 43 1 4.0137 9.2200 -1.1767 44 1 1.5143 4.6157 0.0108 45 1 0.2865 2.4886 0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053935447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:11 Heat of formation + Delta-G solvation = 10.306242 kcal Electronic energy + Delta-G solvation = -27198.951828 eV Core-core repulsion = 23376.138448 eV Total energy + Delta-G solvation = -3822.813381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.75262 -40.85910 -39.47195 -37.74845 -35.56628 -35.08638 -34.12003 -32.44345 -31.61076 -30.50804 -29.64713 -27.35322 -26.68855 -25.44771 -23.87337 -23.69756 -22.60070 -21.68340 -20.59062 -20.53307 -19.14215 -18.73254 -17.88034 -17.18162 -16.98989 -16.56814 -16.25087 -16.17875 -15.86405 -15.77748 -15.61577 -15.12215 -15.03121 -14.68626 -14.40025 -14.18184 -14.12501 -13.85016 -13.48645 -13.22500 -13.14156 -13.03608 -12.80738 -12.60548 -12.55652 -12.32348 -12.24322 -11.95519 -11.81402 -11.60131 -11.34094 -11.32979 -11.05982 -10.92573 -10.60570 -10.02899 -10.01606 -9.21145 -8.90565 -7.89690 -5.21393 -0.46007 0.39559 1.26707 1.44282 1.46698 1.54982 2.01751 2.08448 2.47400 2.86454 2.95824 3.28671 3.39103 3.51834 3.61615 3.71512 3.75887 3.79519 3.88547 3.94526 4.06909 4.32556 4.32956 4.36394 4.46382 4.61321 4.68205 4.73088 4.75534 4.75870 4.91446 4.93058 4.93887 5.02787 5.03351 5.17617 5.24246 5.25793 5.30478 5.35173 5.43840 5.52202 5.64931 5.80913 5.91694 5.94509 6.22776 6.43941 6.93337 7.09172 7.61468 8.56533 9.27450 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013581 B = 0.002788 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.191569 B =10040.143201 C =11733.537291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.142 4.142 3 C -0.035 4.035 4 C -0.121 4.121 5 C -0.067 4.067 6 C -0.158 4.158 7 C 0.560 3.440 8 O -0.575 6.575 9 N -0.705 5.705 10 C 0.120 3.880 11 H 0.118 0.882 12 C 0.032 3.968 13 O -0.368 6.368 14 C 0.076 3.924 15 C 0.169 3.831 16 N -0.641 5.641 17 C -0.234 4.234 18 H 0.079 0.921 19 C -0.068 4.068 20 N -0.951 5.951 21 Si 0.978 3.022 22 H -0.283 1.283 23 H -0.293 1.293 24 H -0.272 1.272 25 C 0.103 3.897 26 C -0.133 4.133 27 C -0.083 4.083 28 C -0.133 4.133 29 H 0.125 0.875 30 H 0.105 0.895 31 H 0.138 0.862 32 H 0.155 0.845 33 H 0.134 0.866 34 H 0.409 0.591 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.040 0.960 39 H 0.248 0.752 40 H 0.047 0.953 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.119 0.881 44 H 0.138 0.862 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.849 -20.423 -7.928 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C -0.035 4.035 4 C -0.139 4.139 5 C -0.086 4.086 6 C -0.161 4.161 7 C 0.349 3.651 8 O -0.456 6.456 9 N -0.356 5.356 10 C 0.014 3.986 11 H 0.136 0.864 12 C -0.046 4.046 13 O -0.287 6.287 14 C 0.035 3.965 15 C 0.043 3.957 16 N -0.367 5.367 17 C -0.362 4.362 18 H 0.097 0.903 19 C -0.261 4.261 20 N -0.600 5.600 21 Si 0.806 3.194 22 H -0.210 1.210 23 H -0.220 1.220 24 H -0.197 1.197 25 C -0.022 4.022 26 C -0.172 4.172 27 C -0.102 4.102 28 C -0.150 4.150 29 H 0.143 0.857 30 H 0.123 0.877 31 H 0.156 0.844 32 H 0.173 0.827 33 H 0.152 0.848 34 H 0.247 0.753 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.137 0.863 44 H 0.155 0.845 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.335 -20.251 -7.551 23.164 hybrid contribution -1.136 0.982 0.606 1.620 sum 7.199 -19.268 -6.945 21.710 Atomic orbital electron populations 1.24765 0.95582 1.03602 0.95691 1.21971 0.95695 0.95455 1.02874 1.19661 0.93693 0.94101 0.96066 1.21487 0.93397 0.98494 1.00523 1.21297 1.00827 0.91135 0.95368 1.19978 0.94271 0.93087 1.08769 1.18543 0.86908 0.84433 0.75179 1.90729 1.14642 1.88148 1.52098 1.45890 1.10941 1.04833 1.73890 1.22479 0.97028 0.82836 0.96209 0.86376 1.24161 0.87327 0.96957 0.96137 1.88897 1.38004 1.67643 1.34120 1.23426 0.96062 0.91868 0.85114 1.22298 0.91686 0.86328 0.95349 1.46192 1.09572 1.21524 1.59427 1.19364 0.93241 0.99261 1.24341 0.90298 1.25593 0.97801 0.99833 1.02837 1.69987 1.12343 1.26275 1.51404 0.85089 0.78183 0.77943 0.78181 1.21019 1.21979 1.19721 1.23254 0.86941 0.94130 0.97880 1.23097 1.00409 0.96684 0.96997 1.21434 0.92547 0.99635 0.96540 1.21518 1.01290 0.91281 1.00927 0.85689 0.87728 0.84438 0.82719 0.84845 0.75337 0.89774 0.89650 0.93921 0.94134 0.94296 0.93437 0.91239 0.88342 0.86303 0.84469 0.83383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 14.15 66.65 0.94 -0.65 16 2 C -0.14 -1.69 9.90 23.59 0.23 -1.45 16 3 C -0.03 -0.57 5.87 -20.08 -0.12 -0.69 16 4 C -0.12 -2.00 9.76 22.48 0.22 -1.78 16 5 C -0.07 -1.42 9.57 22.48 0.22 -1.20 16 6 C -0.16 -3.69 5.88 -20.05 -0.12 -3.81 16 7 C 0.56 15.16 7.77 86.74 0.67 15.84 16 8 O -0.57 -18.67 15.98 -3.94 -0.06 -18.73 16 9 N -0.70 -17.50 5.10 -439.01 -2.24 -19.73 16 10 C 0.12 2.98 3.51 46.38 0.16 3.15 16 11 H 0.12 2.75 7.55 -2.39 -0.02 2.73 16 12 C 0.03 0.92 7.42 72.68 0.54 1.46 16 13 O -0.37 -14.46 11.29 -148.98 -1.68 -16.14 16 14 C 0.08 2.78 1.53 -10.46 -0.02 2.77 16 15 C 0.17 7.92 6.90 86.21 0.59 8.52 16 16 N -0.64 -33.73 3.70 -733.84 -2.72 -36.45 16 17 C -0.23 -13.57 10.70 84.03 0.90 -12.67 16 18 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 19 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 20 N -0.95 -57.99 11.39 21.65 0.25 -57.74 16 21 Si 0.98 46.80 29.55 68.60 2.03 48.83 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 25 C 0.10 4.13 8.34 86.22 0.72 4.85 16 26 C -0.13 -3.33 6.13 31.42 0.19 -3.14 16 27 C -0.08 -1.67 9.52 22.49 0.21 -1.46 16 28 C -0.13 -2.32 9.38 22.48 0.21 -2.11 16 29 H 0.13 0.77 8.06 -2.91 -0.02 0.75 16 30 H 0.10 1.02 6.02 -2.91 -0.02 1.01 16 31 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.13 2.80 7.64 -2.91 -0.02 2.78 16 34 H 0.41 9.43 6.64 -92.71 -0.62 8.81 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 38 H 0.04 2.20 7.18 -2.39 -0.02 2.19 16 39 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 40 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.07 2.43 8.06 -2.39 -0.02 2.41 16 42 H 0.10 2.27 7.81 -2.39 -0.02 2.26 16 43 H 0.12 2.37 7.89 -2.39 -0.02 2.35 16 44 H 0.14 2.46 6.38 -2.91 -0.02 2.45 16 45 H 0.15 2.01 6.15 -2.91 -0.02 1.99 16 Total: -1.00 -76.22 374.34 2.00 -74.22 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.40 Total: 21.62 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 6.03 Total: 4.13 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -4.71 Total: -113.92 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -1.74 Total: -34.88 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -76.22 2.00 -74.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053935447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.526 kcal (2) G-P(sol) polarization free energy of solvation -76.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds