Wall clock time and date at job start Tue Mar 31 2020 16:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47328 * 2 1 4 4 C 1.53007 * 109.46931 * 120.00180 * 2 1 3 5 5 C 1.50701 * 109.47254 * 64.99397 * 4 2 1 6 6 O 1.21277 * 119.99882 * 0.02562 * 5 4 2 7 7 N 1.34770 * 119.99779 * 179.97438 * 5 4 2 8 8 C 1.46504 * 119.99770 * 180.02562 * 7 5 4 9 9 C 1.53010 * 109.47083 * 174.96292 * 8 7 5 10 10 N 1.46493 * 112.84911 * 311.52266 * 9 8 7 11 11 C 1.34777 * 120.00129 * 294.02337 * 10 9 8 12 12 O 1.21281 * 120.00173 * 354.96852 * 11 10 9 13 13 C 1.50708 * 120.00141 * 174.97223 * 11 10 9 14 14 S 1.80996 * 109.47252 * 179.97438 * 13 11 10 15 15 C 1.76195 * 99.99884 * 179.97438 * 14 13 11 16 16 H 1.07992 * 120.00607 * 0.02562 * 15 14 13 17 17 C 1.38805 * 119.99868 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00091 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99924 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47357 * 90.00202 * 19 17 15 21 21 H 1.48499 * 109.47466 * 209.99939 * 19 17 15 22 22 H 1.48502 * 109.47444 * 330.00025 * 19 17 15 23 23 C 1.53775 * 113.68859 * 82.79138 * 9 8 7 24 24 C 1.53782 * 87.08260 * 139.99290 * 23 9 8 25 25 C 1.53778 * 113.61271 * 180.32315 * 9 8 7 26 26 H 1.08997 * 109.46813 * 60.00034 * 1 2 3 27 27 H 1.08997 * 109.47031 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47246 * 300.00122 * 1 2 3 29 29 H 1.09000 * 109.47272 * 239.99421 * 2 1 3 30 30 H 1.09003 * 109.46911 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46783 * 300.00115 * 3 2 1 32 32 H 1.09003 * 109.46834 * 59.99979 * 3 2 1 33 33 H 1.08999 * 109.46682 * 305.00139 * 4 2 1 34 34 H 1.08997 * 109.47068 * 184.99868 * 4 2 1 35 35 H 0.96999 * 120.00349 * 0.02562 * 7 5 4 36 36 H 1.09002 * 109.46965 * 54.96849 * 8 7 5 37 37 H 1.08994 * 109.47187 * 294.96475 * 8 7 5 38 38 H 0.97000 * 120.00227 * 114.01862 * 10 9 8 39 39 H 1.09000 * 109.46675 * 59.99418 * 13 11 10 40 40 H 1.09000 * 109.46876 * 299.99651 * 13 11 10 41 41 H 0.96997 * 120.00355 * 180.02562 * 18 17 15 42 42 H 1.09000 * 113.61589 * 254.54306 * 23 9 8 43 43 H 1.09000 * 113.61764 * 25.44064 * 23 9 8 44 44 H 1.08996 * 113.61346 * 220.02295 * 24 23 9 45 45 H 1.08999 * 113.61492 * 89.11500 * 24 23 9 46 46 H 1.08995 * 113.61919 * 334.48913 * 25 9 8 47 47 H 1.09010 * 113.61004 * 105.38860 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 -2.1734 1.1890 6 8 1.0116 -2.5903 0.2400 7 7 1.9852 -3.0087 2.1891 8 6 1.5979 -4.4204 2.1302 9 6 2.2141 -5.1681 3.3144 10 7 3.6421 -4.8880 3.4833 11 6 4.5229 -5.2879 2.5448 12 8 4.1469 -5.9584 1.6067 13 6 5.9751 -4.9021 2.6611 14 16 6.8949 -5.5853 1.2600 15 6 8.5119 -4.9974 1.6397 16 1 8.6763 -4.4041 2.5270 17 6 9.5746 -5.2968 0.7984 18 7 10.7827 -4.8581 1.0824 19 14 9.2902 -6.3224 -0.7367 20 1 8.9635 -5.4279 -1.8762 21 1 10.5189 -7.0950 -1.0506 22 1 8.1621 -7.2597 -0.5039 23 6 1.4034 -5.0408 4.6149 24 6 1.7194 -6.5249 4.8646 25 6 1.8730 -6.6674 3.3412 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6053 -0.2618 2.1370 34 1 3.1263 -0.6445 1.2952 35 1 2.4891 -2.6753 2.9479 36 1 1.9571 -4.8571 1.1983 37 1 0.5119 -4.5014 2.1746 38 1 3.9537 -4.4146 4.2705 39 1 6.3828 -5.2984 3.5911 40 1 6.0636 -3.8158 2.6593 41 1 11.5252 -5.0670 0.4943 42 1 1.8535 -4.3695 5.3461 43 1 0.3443 -4.8414 4.4515 44 1 0.8799 -7.0874 5.2732 45 1 2.6467 -6.6875 5.4141 46 1 0.9424 -6.9127 2.8295 47 1 2.7025 -7.3092 3.0441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062418261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:50 Heat of formation + Delta-G solvation = -72.327185 kcal Electronic energy + Delta-G solvation = -26243.919390 eV Core-core repulsion = 22552.966706 eV Total energy + Delta-G solvation = -3690.952684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.82083 -39.62418 -37.96006 -35.83178 -34.45934 -33.15858 -32.46485 -29.82747 -28.98291 -27.25123 -26.99824 -26.03003 -25.63898 -23.03096 -21.25446 -20.72173 -20.01039 -19.25303 -17.92187 -17.40661 -16.51869 -16.40575 -15.93933 -15.54663 -15.39409 -15.02561 -14.77714 -14.68019 -14.26967 -13.99250 -13.92160 -13.56989 -13.36541 -13.01113 -12.82193 -12.63963 -12.47442 -12.31982 -12.28889 -12.04934 -11.77884 -11.30501 -11.27271 -11.17114 -11.10102 -11.02610 -10.95785 -10.82641 -10.64568 -10.58125 -9.87804 -9.76099 -9.52710 -9.07821 -9.05182 -9.01097 -8.53092 -6.94798 -6.31772 -4.03654 2.62052 2.67072 2.89589 3.06636 3.25741 3.32225 3.48866 3.59005 4.11359 4.30809 4.34682 4.48221 4.57404 4.60393 4.67545 4.73584 4.76837 5.02629 5.07560 5.15095 5.28666 5.31736 5.37673 5.41060 5.41676 5.47371 5.50560 5.52086 5.61299 5.69277 5.72897 5.78217 5.84353 5.86983 5.93564 5.98334 6.00806 6.02200 6.20304 6.25586 6.38588 6.59038 7.41683 7.51540 7.91183 8.20276 8.38156 8.43259 9.14556 10.77438 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009052 B = 0.003712 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.480870 B = 7540.574908 C = 9786.796618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.082 4.082 3 C -0.148 4.148 4 C -0.138 4.138 5 C 0.512 3.488 6 O -0.537 6.537 7 N -0.725 5.725 8 C 0.122 3.878 9 C 0.143 3.857 10 N -0.719 5.719 11 C 0.534 3.466 12 O -0.507 6.507 13 C -0.124 4.124 14 S -0.139 6.139 15 C -0.523 4.523 16 H 0.088 0.912 17 C 0.097 3.903 18 N -0.880 5.880 19 Si 0.856 3.144 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.134 4.134 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.397 0.603 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.400 0.600 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.271 0.729 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.430 7.103 8.920 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.101 4.101 3 C -0.206 4.206 4 C -0.178 4.178 5 C 0.299 3.701 6 O -0.414 6.414 7 N -0.376 5.376 8 C -0.003 4.003 9 C 0.055 3.945 10 N -0.374 5.374 11 C 0.320 3.680 12 O -0.380 6.380 13 C -0.275 4.275 14 S 0.088 5.912 15 C -0.670 4.670 16 H 0.106 0.894 17 C -0.112 4.112 18 N -0.517 5.517 19 Si 0.681 3.319 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 C -0.174 4.174 24 C -0.176 4.176 25 C -0.173 4.173 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.231 0.769 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.235 0.765 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.314 5.690 6.594 23.953 hybrid contribution 1.197 0.838 1.261 1.930 sum -21.117 6.528 7.855 23.457 Atomic orbital electron populations 1.21952 0.94880 1.03261 1.00829 1.20862 0.96468 0.95371 0.97364 1.21865 1.01158 0.95731 1.01797 1.21783 1.03160 0.92015 1.00820 1.20717 0.79099 0.88378 0.81918 1.90670 1.39845 1.78043 1.32832 1.45863 1.58186 1.09665 1.23915 1.21637 0.98737 0.80327 0.99584 1.21480 0.81520 0.96642 0.94858 1.45679 1.05157 1.61585 1.24999 1.20267 0.87198 0.78847 0.81656 1.90710 1.79397 1.36129 1.31740 1.23280 0.93734 1.04979 1.05497 1.84844 1.05456 1.70595 1.30336 1.22308 0.91066 1.39323 1.14315 0.89431 1.24703 0.94043 0.94829 0.97646 1.69932 0.99543 1.44130 1.38051 0.86749 0.79724 0.81965 0.83503 1.19185 1.19903 1.15935 1.23264 1.00439 0.97881 0.95771 1.22833 1.02038 0.95886 0.96892 1.23174 1.02946 0.95175 0.96033 0.93031 0.90766 0.93549 0.90282 0.92467 0.92427 0.92781 0.89143 0.88736 0.76891 0.89794 0.91034 0.76506 0.88591 0.88646 0.91912 0.90827 0.88664 0.91101 0.89936 0.89211 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.93 37.16 0.33 -1.17 16 2 C -0.08 -0.82 2.57 -90.62 -0.23 -1.05 16 3 C -0.15 -1.19 9.19 37.16 0.34 -0.85 16 4 C -0.14 -1.27 5.18 -27.88 -0.14 -1.41 16 5 C 0.51 6.32 7.55 -10.99 -0.08 6.24 16 6 O -0.54 -8.68 13.96 5.56 0.08 -8.60 16 7 N -0.72 -7.62 5.38 -60.29 -0.32 -7.94 16 8 C 0.12 1.42 4.93 -4.03 -0.02 1.40 16 9 C 0.14 1.40 0.63 -131.01 -0.08 1.32 16 10 N -0.72 -7.76 4.53 -46.86 -0.21 -7.97 16 11 C 0.53 8.67 7.40 -10.98 -0.08 8.59 16 12 O -0.51 -10.22 13.86 5.56 0.08 -10.14 16 13 C -0.12 -2.27 6.16 36.01 0.22 -2.04 16 14 S -0.14 -3.44 18.55 -107.50 -1.99 -5.43 16 15 C -0.52 -14.83 10.04 30.94 0.31 -14.52 16 16 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 17 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 18 N -0.88 -26.36 13.97 55.49 0.78 -25.58 16 19 Si 0.86 21.75 27.74 -169.99 -4.71 17.03 16 20 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.24 -5.98 6.74 56.52 0.38 -5.59 16 23 C -0.14 -0.90 7.37 -25.92 -0.19 -1.09 16 24 C -0.14 -1.07 7.99 -25.92 -0.21 -1.28 16 25 C -0.13 -1.39 6.95 -25.92 -0.18 -1.57 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.90 5.95 -51.93 -0.31 0.59 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.96 7.95 -51.93 -0.41 0.54 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.40 3.19 8.11 -40.82 -0.33 2.86 16 36 H 0.08 1.34 7.34 -51.93 -0.38 0.96 16 37 H 0.07 0.77 7.94 -51.93 -0.41 0.36 16 38 H 0.40 3.11 8.67 -40.82 -0.35 2.76 16 39 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 40 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 43 H 0.09 0.56 7.96 -51.93 -0.41 0.15 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 47 H 0.08 1.13 7.19 -51.92 -0.37 0.76 16 LS Contribution 392.55 15.07 5.92 5.92 Total: -1.00 -35.08 392.55 -8.57 -43.65 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -8.06 Total: 3.82 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -0.11 Total: -4.75 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.24 Total: -41.50 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.15 Total: -18.74 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.43 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.08 -8.57 -43.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062418261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.675 kcal (2) G-P(sol) polarization free energy of solvation -35.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds