Wall clock time and date at job start Tue Mar 31 2020 16:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47328 * 2 1 4 4 C 1.53007 * 109.46931 * 120.00180 * 2 1 3 5 5 C 1.50701 * 109.47254 * 64.99397 * 4 2 1 6 6 O 1.21277 * 119.99882 * 0.02562 * 5 4 2 7 7 N 1.34770 * 119.99779 * 179.97438 * 5 4 2 8 8 C 1.46504 * 119.99770 * 180.02562 * 7 5 4 9 9 C 1.53010 * 109.47083 * 174.96292 * 8 7 5 10 10 N 1.46493 * 112.84911 * 311.52266 * 9 8 7 11 11 C 1.34777 * 120.00129 * 294.02337 * 10 9 8 12 12 O 1.21281 * 120.00173 * 354.96852 * 11 10 9 13 13 C 1.50708 * 120.00141 * 174.97223 * 11 10 9 14 14 S 1.80996 * 109.47252 * 179.97438 * 13 11 10 15 15 C 1.76195 * 99.99884 * 179.97438 * 14 13 11 16 16 H 1.07992 * 120.00607 * 0.02562 * 15 14 13 17 17 C 1.38805 * 119.99868 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00091 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99924 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47357 * 90.00202 * 19 17 15 21 21 H 1.48499 * 109.47466 * 209.99939 * 19 17 15 22 22 H 1.48502 * 109.47444 * 330.00025 * 19 17 15 23 23 C 1.53775 * 113.68859 * 82.79138 * 9 8 7 24 24 C 1.53782 * 87.08260 * 139.99290 * 23 9 8 25 25 C 1.53778 * 113.61271 * 180.32315 * 9 8 7 26 26 H 1.08997 * 109.46813 * 60.00034 * 1 2 3 27 27 H 1.08997 * 109.47031 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47246 * 300.00122 * 1 2 3 29 29 H 1.09000 * 109.47272 * 239.99421 * 2 1 3 30 30 H 1.09003 * 109.46911 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46783 * 300.00115 * 3 2 1 32 32 H 1.09003 * 109.46834 * 59.99979 * 3 2 1 33 33 H 1.08999 * 109.46682 * 305.00139 * 4 2 1 34 34 H 1.08997 * 109.47068 * 184.99868 * 4 2 1 35 35 H 0.96999 * 120.00349 * 0.02562 * 7 5 4 36 36 H 1.09002 * 109.46965 * 54.96849 * 8 7 5 37 37 H 1.08994 * 109.47187 * 294.96475 * 8 7 5 38 38 H 0.97000 * 120.00227 * 114.01862 * 10 9 8 39 39 H 1.09000 * 109.46675 * 59.99418 * 13 11 10 40 40 H 1.09000 * 109.46876 * 299.99651 * 13 11 10 41 41 H 0.96997 * 120.00355 * 180.02562 * 18 17 15 42 42 H 1.09000 * 113.61589 * 254.54306 * 23 9 8 43 43 H 1.09000 * 113.61764 * 25.44064 * 23 9 8 44 44 H 1.08996 * 113.61346 * 220.02295 * 24 23 9 45 45 H 1.08999 * 113.61492 * 89.11500 * 24 23 9 46 46 H 1.08995 * 113.61919 * 334.48913 * 25 9 8 47 47 H 1.09010 * 113.61004 * 105.38860 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 -2.1734 1.1890 6 8 1.0116 -2.5903 0.2400 7 7 1.9852 -3.0087 2.1891 8 6 1.5979 -4.4204 2.1302 9 6 2.2141 -5.1681 3.3144 10 7 3.6421 -4.8880 3.4833 11 6 4.5229 -5.2879 2.5448 12 8 4.1469 -5.9584 1.6067 13 6 5.9751 -4.9021 2.6611 14 16 6.8949 -5.5853 1.2600 15 6 8.5119 -4.9974 1.6397 16 1 8.6763 -4.4041 2.5270 17 6 9.5746 -5.2968 0.7984 18 7 10.7827 -4.8581 1.0824 19 14 9.2902 -6.3224 -0.7367 20 1 8.9635 -5.4279 -1.8762 21 1 10.5189 -7.0950 -1.0506 22 1 8.1621 -7.2597 -0.5039 23 6 1.4034 -5.0408 4.6149 24 6 1.7194 -6.5249 4.8646 25 6 1.8730 -6.6674 3.3412 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6053 -0.2618 2.1370 34 1 3.1263 -0.6445 1.2952 35 1 2.4891 -2.6753 2.9479 36 1 1.9571 -4.8571 1.1983 37 1 0.5119 -4.5014 2.1746 38 1 3.9537 -4.4146 4.2705 39 1 6.3828 -5.2984 3.5911 40 1 6.0636 -3.8158 2.6593 41 1 11.5252 -5.0670 0.4943 42 1 1.8535 -4.3695 5.3461 43 1 0.3443 -4.8414 4.4515 44 1 0.8799 -7.0874 5.2732 45 1 2.6467 -6.6875 5.4141 46 1 0.9424 -6.9127 2.8295 47 1 2.7025 -7.3092 3.0441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062418261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:49 Heat of formation + Delta-G solvation = -97.390973 kcal Electronic energy + Delta-G solvation = -26245.006237 eV Core-core repulsion = 22552.966706 eV Total energy + Delta-G solvation = -3692.039531 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.79056 -40.62237 -39.09892 -36.61332 -35.43266 -34.68995 -34.31387 -30.98007 -30.08365 -27.96696 -27.92766 -27.75378 -26.73003 -23.89410 -22.27160 -21.71384 -20.85201 -20.20508 -19.88374 -18.30784 -17.89009 -17.33660 -17.11175 -16.89298 -16.56791 -16.42492 -15.93826 -15.73332 -15.47826 -15.08752 -14.93234 -14.82191 -14.72688 -14.28557 -14.02563 -13.68654 -13.36449 -13.26736 -13.21857 -13.05053 -13.02399 -12.79717 -12.70225 -12.59318 -12.07266 -11.92467 -11.89333 -11.82268 -11.72750 -11.58515 -11.37300 -11.19098 -10.83031 -10.75663 -10.52846 -10.09283 -10.04932 -9.00306 -8.53314 -6.23097 0.97305 1.28683 1.44337 1.52406 1.58240 1.68207 2.08565 2.22467 2.31318 2.70982 2.85336 3.37907 3.60776 3.69245 3.79080 3.85602 3.92901 3.98777 4.03441 4.23670 4.36874 4.41800 4.46190 4.49485 4.67294 4.71426 4.73919 4.76280 4.81731 4.84939 4.86820 5.03943 5.06297 5.10424 5.12375 5.14273 5.25420 5.30303 5.39800 5.48777 5.54763 5.66266 5.69514 6.10207 6.48459 6.57295 6.92727 7.23629 7.30594 8.59016 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009052 B = 0.003712 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.480870 B = 7540.574908 C = 9786.796618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.131 4.131 5 C 0.503 3.497 6 O -0.583 6.583 7 N -0.713 5.713 8 C 0.128 3.872 9 C 0.137 3.863 10 N -0.691 5.691 11 C 0.539 3.461 12 O -0.551 6.551 13 C -0.110 4.110 14 S -0.181 6.181 15 C -0.526 4.526 16 H 0.065 0.935 17 C 0.049 3.951 18 N -0.916 5.916 19 Si 0.910 3.090 20 H -0.265 1.265 21 H -0.259 1.259 22 H -0.239 1.239 23 C -0.112 4.112 24 C -0.130 4.130 25 C -0.147 4.147 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.125 0.875 34 H 0.104 0.896 35 H 0.413 0.587 36 H 0.034 0.966 37 H 0.082 0.918 38 H 0.421 0.579 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.277 0.723 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.048 8.405 11.371 27.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 C -0.200 4.200 4 C -0.171 4.171 5 C 0.291 3.709 6 O -0.463 6.463 7 N -0.365 5.365 8 C 0.002 3.998 9 C 0.050 3.950 10 N -0.346 5.346 11 C 0.324 3.676 12 O -0.428 6.428 13 C -0.261 4.261 14 S 0.045 5.955 15 C -0.673 4.673 16 H 0.083 0.917 17 C -0.157 4.157 18 N -0.554 5.554 19 Si 0.732 3.268 20 H -0.190 1.190 21 H -0.183 1.183 22 H -0.163 1.163 23 C -0.149 4.149 24 C -0.167 4.167 25 C -0.185 4.185 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.143 0.857 34 H 0.122 0.878 35 H 0.249 0.751 36 H 0.052 0.948 37 H 0.100 0.900 38 H 0.259 0.741 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.086 0.914 42 H 0.119 0.881 43 H 0.130 0.870 44 H 0.105 0.895 45 H 0.100 0.900 46 H 0.113 0.887 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -23.924 7.022 9.127 26.551 hybrid contribution 1.601 0.459 0.577 1.762 sum -22.323 7.480 9.704 25.464 Atomic orbital electron populations 1.21890 0.94867 1.01799 1.01928 1.20863 0.96536 0.96488 0.96532 1.21816 1.01128 0.94249 1.02779 1.21824 1.03808 0.89686 1.01761 1.21381 0.78320 0.89781 0.81370 1.90659 1.42014 1.79032 1.34640 1.45779 1.57722 1.08970 1.24058 1.21494 0.99320 0.80866 0.98102 1.21674 0.80696 0.96273 0.96363 1.45354 1.05129 1.60023 1.24137 1.19928 0.86903 0.78677 0.82066 1.90715 1.79843 1.38380 1.33883 1.23268 0.94286 1.05697 1.02816 1.84842 1.04484 1.71571 1.34559 1.22449 0.92970 1.38566 1.13351 0.91691 1.25489 0.93957 0.95935 1.00322 1.70002 1.00385 1.45543 1.39438 0.85932 0.79953 0.80681 0.80206 1.19023 1.18275 1.16300 1.23225 1.00775 0.97549 0.93364 1.22807 1.02710 0.96949 0.94264 1.23252 1.01860 0.94713 0.98721 0.92880 0.93422 0.91486 0.93549 0.92448 0.92375 0.90894 0.85737 0.87822 0.75092 0.94796 0.89983 0.74092 0.86776 0.86811 0.91382 0.88071 0.87001 0.89485 0.90032 0.88746 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.93 71.98 0.64 -2.17 16 2 C -0.09 -1.63 2.57 -10.79 -0.03 -1.66 16 3 C -0.14 -2.01 9.19 71.98 0.66 -1.35 16 4 C -0.13 -2.16 5.18 29.85 0.15 -2.00 16 5 C 0.50 12.09 7.55 87.66 0.66 12.75 16 6 O -0.58 -19.52 13.96 -3.02 -0.04 -19.56 16 7 N -0.71 -13.83 5.38 -463.05 -2.49 -16.32 16 8 C 0.13 2.90 4.93 86.38 0.43 3.32 16 9 C 0.14 2.42 0.63 4.13 0.00 2.42 16 10 N -0.69 -13.34 4.53 -420.54 -1.91 -15.25 16 11 C 0.54 17.04 7.40 87.66 0.65 17.69 16 12 O -0.55 -22.71 13.86 -3.03 -0.04 -22.75 16 13 C -0.11 -3.88 6.16 71.24 0.44 -3.44 16 14 S -0.18 -9.04 18.55 -56.49 -1.05 -10.09 16 15 C -0.53 -30.19 10.04 67.96 0.68 -29.51 16 16 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16 17 C 0.05 2.84 5.50 84.86 0.47 3.30 16 18 N -0.92 -55.40 13.97 21.65 0.30 -55.09 16 19 Si 0.91 45.34 27.74 68.60 1.90 47.24 16 20 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 21 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 22 H -0.24 -11.96 6.74 99.48 0.67 -11.29 16 23 C -0.11 -1.00 7.37 31.12 0.23 -0.77 16 24 C -0.13 -1.58 7.99 31.12 0.25 -1.33 16 25 C -0.15 -2.91 6.95 31.12 0.22 -2.69 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 1.18 5.95 -2.39 -0.01 1.16 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 1.17 7.95 -2.39 -0.02 1.15 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.41 5.28 8.11 -92.71 -0.75 4.53 16 36 H 0.03 1.13 7.34 -2.39 -0.02 1.12 16 37 H 0.08 1.69 7.94 -2.39 -0.02 1.67 16 38 H 0.42 4.88 8.67 -92.71 -0.80 4.07 16 39 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 40 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 41 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.10 0.45 8.09 -2.39 -0.02 0.43 16 43 H 0.11 0.76 7.96 -2.39 -0.02 0.74 16 44 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.09 1.74 8.10 -2.39 -0.02 1.72 16 47 H 0.05 1.31 7.19 -2.38 -0.02 1.29 16 Total: -1.00 -81.19 392.55 1.50 -79.68 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -0.62 Total: 17.58 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 5.45 Total: -5.43 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -4.10 Total: -86.67 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -0.08 Total: -42.31 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.90 Total: 47.24 kcal Atomic # 16 Polarization: -9.04 SS G_CDS: -1.05 Total: -10.09 kcal Total: -81.19 1.50 -79.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062418261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.706 kcal (2) G-P(sol) polarization free energy of solvation -81.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds