Wall clock time and date at job start Tue Mar 31 2020 16:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47101 * 2 1 4 4 C 1.53001 * 109.46837 * 119.99630 * 2 1 3 5 5 C 1.50700 * 109.46848 * 65.00591 * 4 2 1 6 6 O 1.21273 * 120.00167 * 359.71711 * 5 4 2 7 7 N 1.34782 * 119.99874 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00095 * 174.69169 * 7 5 4 9 9 C 1.52995 * 112.84967 * 294.02252 * 8 7 5 10 10 N 1.46503 * 109.47348 * 311.52135 * 9 8 7 11 11 C 1.34775 * 120.00333 * 174.95954 * 10 9 8 12 12 O 1.21274 * 119.99817 * 359.97438 * 11 10 9 13 13 C 1.50707 * 119.99915 * 179.97438 * 11 10 9 14 14 S 1.80998 * 109.47066 * 179.97438 * 13 11 10 15 15 C 1.76195 * 100.00090 * 179.97438 * 14 13 11 16 16 H 1.08007 * 119.99920 * 0.02562 * 15 14 13 17 17 C 1.38796 * 119.99954 * 179.97438 * 15 14 13 18 18 N 1.31630 * 120.00180 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99884 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47024 * 60.00800 * 19 17 15 21 21 H 1.48501 * 109.47268 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47598 * 300.00963 * 19 17 15 23 23 C 1.53780 * 113.61541 * 162.71674 * 8 7 5 24 24 C 1.53787 * 87.07957 * 270.88459 * 23 8 7 25 25 C 1.53782 * 113.61449 * 65.21512 * 8 7 5 26 26 H 1.09000 * 109.47305 * 59.99855 * 1 2 3 27 27 H 1.09004 * 109.47447 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47519 * 300.00013 * 1 2 3 29 29 H 1.09001 * 109.47233 * 239.99519 * 2 1 3 30 30 H 1.09001 * 109.47121 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47275 * 299.99938 * 3 2 1 32 32 H 1.09000 * 109.46919 * 60.00191 * 3 2 1 33 33 H 1.09000 * 109.47602 * 305.00172 * 4 2 1 34 34 H 1.09001 * 109.47240 * 184.99778 * 4 2 1 35 35 H 0.97000 * 120.00101 * 354.69443 * 7 5 4 36 36 H 1.08996 * 109.47620 * 71.51889 * 9 8 7 37 37 H 1.09003 * 109.47507 * 191.52198 * 9 8 7 38 38 H 0.97007 * 119.99534 * 354.95633 * 10 9 8 39 39 H 1.08998 * 109.47277 * 299.99658 * 13 11 10 40 40 H 1.08999 * 109.46659 * 60.00169 * 13 11 10 41 41 H 0.97004 * 120.00148 * 179.97438 * 18 17 15 42 42 H 1.09001 * 113.61444 * 25.42814 * 23 8 7 43 43 H 1.09000 * 113.61653 * 156.34003 * 23 8 7 44 44 H 1.08998 * 113.60978 * 220.02275 * 24 23 8 45 45 H 1.08998 * 113.61533 * 89.11421 * 24 23 8 46 46 H 1.08994 * 113.61572 * 203.66721 * 25 8 7 47 47 H 1.09001 * 113.61522 * 334.57429 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 -2.1733 1.1889 6 8 1.0070 -2.5891 0.2426 7 7 1.9852 -3.0087 2.1891 8 6 1.4999 -4.3910 2.1886 9 6 -0.0173 -4.4880 2.3598 10 7 -0.4366 -3.6480 3.4844 11 6 -1.7470 -3.4962 3.7604 12 8 -2.5792 -4.0546 3.0774 13 6 -2.1783 -2.6325 4.9177 14 16 -3.9849 -2.6288 5.0274 15 6 -4.2046 -1.5753 6.4225 16 1 -3.3444 -1.1554 6.9229 17 6 -5.4830 -1.2842 6.8779 18 7 -6.5313 -1.7956 6.2678 19 14 -5.7158 -0.1679 8.3574 20 1 -5.1254 1.1641 8.0703 21 1 -7.1658 -0.0165 8.6400 22 1 -5.0413 -0.7640 9.5384 23 6 2.2882 -5.3210 3.1258 24 6 3.2262 -5.5935 1.9380 25 6 2.0435 -5.2342 1.0230 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1262 -0.6443 1.2953 35 1 2.5541 -2.6947 2.9093 36 1 -0.5084 -4.1467 1.4486 37 1 -0.2953 -5.5235 2.5563 38 1 0.2290 -3.2011 4.0305 39 1 -1.7586 -3.0282 5.8425 40 1 -1.8219 -1.6140 4.7634 41 1 -7.4248 -1.5924 6.5862 42 1 2.7710 -4.8003 3.9528 43 1 1.7247 -6.1970 3.4470 44 1 3.5389 -6.6347 1.8586 45 1 4.0592 -4.8938 1.8699 46 1 1.4130 -6.0864 0.7694 47 1 2.3287 -4.6435 0.1525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062578450.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:42 Heat of formation + Delta-G solvation = -71.650615 kcal Electronic energy + Delta-G solvation = -26296.786697 eV Core-core repulsion = 22605.863351 eV Total energy + Delta-G solvation = -3690.923346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.00229 -39.05783 -38.46756 -35.63467 -34.20865 -33.39977 -32.41778 -29.99476 -28.56607 -27.20587 -27.04486 -26.11075 -25.44980 -23.04615 -21.54302 -20.31239 -19.97427 -19.42604 -17.89551 -17.38220 -16.61784 -16.29066 -15.90114 -15.52487 -15.17102 -15.01526 -14.79612 -14.78198 -14.14984 -13.92939 -13.83317 -13.69876 -13.27989 -12.94457 -12.67242 -12.60106 -12.43820 -12.40583 -12.12146 -12.03056 -11.68447 -11.32315 -11.27734 -11.11618 -11.03646 -11.03459 -11.00919 -10.84635 -10.75855 -10.66480 -9.81905 -9.75039 -9.41177 -9.19622 -9.05286 -8.79314 -8.21643 -6.48216 -6.20256 -3.90773 2.47863 2.79631 3.08351 3.16567 3.23634 3.28103 3.32438 3.73303 4.07173 4.21542 4.28559 4.43938 4.46686 4.54085 4.61729 4.70740 5.00296 5.11219 5.14558 5.21088 5.27127 5.31983 5.33796 5.40967 5.44611 5.51258 5.54552 5.59390 5.64314 5.70985 5.76208 5.77902 5.82805 5.88569 5.90966 5.99121 6.02016 6.13967 6.21028 6.32074 6.46620 6.68363 7.24862 7.59803 7.76062 8.07334 8.35801 8.67789 9.24612 10.87098 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011671 B = 0.003085 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.517124 B = 9073.226882 C =10583.548078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.079 4.079 3 C -0.148 4.148 4 C -0.138 4.138 5 C 0.517 3.483 6 O -0.521 6.521 7 N -0.715 5.715 8 C 0.141 3.859 9 C 0.125 3.875 10 N -0.732 5.732 11 C 0.530 3.470 12 O -0.516 6.516 13 C -0.152 4.152 14 S -0.059 6.059 15 C -0.537 4.537 16 H 0.071 0.929 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.136 4.136 24 C -0.140 4.140 25 C -0.132 4.132 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.400 0.600 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.393 0.607 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.269 0.731 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.447 -0.925 -8.490 26.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.098 4.098 3 C -0.206 4.206 4 C -0.178 4.178 5 C 0.304 3.696 6 O -0.396 6.396 7 N -0.369 5.369 8 C 0.054 3.946 9 C -0.001 4.001 10 N -0.387 5.387 11 C 0.316 3.684 12 O -0.390 6.390 13 C -0.302 4.302 14 S 0.168 5.832 15 C -0.685 4.685 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.174 4.174 24 C -0.177 4.177 25 C -0.170 4.170 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.235 0.765 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.227 0.773 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.117 0.883 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.110 0.890 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 23.356 -2.171 -10.344 25.637 hybrid contribution 1.434 1.789 2.479 3.377 sum 24.790 -0.382 -7.865 26.011 Atomic orbital electron populations 1.21974 0.94251 1.03740 1.01321 1.20847 0.96957 0.95182 0.96770 1.21868 1.00533 0.95948 1.02215 1.21807 1.02533 0.91989 1.01480 1.20725 0.78950 0.88046 0.81837 1.90691 1.38565 1.77650 1.32721 1.45720 1.53485 1.10695 1.26955 1.21557 0.92613 0.81846 0.98616 1.21546 0.92216 0.95436 0.90881 1.45826 1.07390 1.52183 1.33254 1.20288 0.81662 0.81195 0.85260 1.90706 1.51236 1.47047 1.50047 1.23514 1.07332 1.01137 0.98266 1.85428 0.92213 1.64609 1.40942 1.22828 0.95197 1.34236 1.16229 0.91048 1.24985 0.94882 0.96181 0.97493 1.70010 0.98432 1.42238 1.39580 0.86234 0.77332 0.80396 0.81588 1.19953 1.20803 1.19955 1.23281 0.97865 0.99456 0.96782 1.22846 0.96911 1.01886 0.96095 1.23155 0.97150 0.99515 0.97218 0.92948 0.90553 0.93104 0.90631 0.92896 0.92348 0.92512 0.88696 0.89209 0.76503 0.90190 0.91033 0.77337 0.89390 0.89499 0.92126 0.90785 0.88293 0.91011 0.90257 0.88981 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 8.93 37.16 0.33 -1.48 16 2 C -0.08 -0.72 2.57 -90.62 -0.23 -0.95 16 3 C -0.15 -1.09 9.19 37.16 0.34 -0.75 16 4 C -0.14 -1.05 5.18 -27.88 -0.14 -1.20 16 5 C 0.52 5.19 7.11 -10.98 -0.08 5.11 16 6 O -0.52 -7.25 11.95 5.56 0.07 -7.19 16 7 N -0.72 -5.45 4.53 -46.86 -0.21 -5.66 16 8 C 0.14 1.24 0.63 -131.01 -0.08 1.15 16 9 C 0.12 1.59 4.92 -4.04 -0.02 1.57 16 10 N -0.73 -10.06 5.38 -60.29 -0.32 -10.38 16 11 C 0.53 10.22 7.85 -10.98 -0.09 10.13 16 12 O -0.52 -12.25 15.86 5.56 0.09 -12.16 16 13 C -0.15 -3.11 6.16 36.01 0.22 -2.88 16 14 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 15 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 16 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 17 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 18 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 19 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 23 C -0.14 -0.88 7.37 -25.92 -0.19 -1.07 16 24 C -0.14 -0.88 7.99 -25.91 -0.21 -1.08 16 25 C -0.13 -1.14 6.95 -25.91 -0.18 -1.32 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.11 5.94 -51.93 -0.31 0.80 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.76 7.96 -51.93 -0.41 0.35 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.40 1.87 8.67 -40.82 -0.35 1.51 16 36 H 0.08 1.30 7.34 -51.93 -0.38 0.92 16 37 H 0.07 0.92 7.94 -51.93 -0.41 0.51 16 38 H 0.39 4.19 8.11 -40.82 -0.33 3.86 16 39 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 41 H 0.27 7.60 8.31 -40.82 -0.34 7.27 16 42 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 43 H 0.10 0.67 7.96 -51.93 -0.41 0.25 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 47 H 0.08 0.82 7.19 -51.93 -0.37 0.44 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -36.24 395.23 -9.08 -45.32 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -8.02 Total: 2.97 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -0.13 Total: -5.83 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.20 Total: -41.67 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.15 Total: -19.35 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.24 -9.08 -45.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062578450.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.332 kcal (2) G-P(sol) polarization free energy of solvation -36.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds