Wall clock time and date at job start Tue Mar 31 2020 16:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47101 * 2 1 4 4 C 1.53001 * 109.46837 * 119.99630 * 2 1 3 5 5 C 1.50700 * 109.46848 * 65.00591 * 4 2 1 6 6 O 1.21273 * 120.00167 * 359.71711 * 5 4 2 7 7 N 1.34782 * 119.99874 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00095 * 174.69169 * 7 5 4 9 9 C 1.52995 * 112.84967 * 294.02252 * 8 7 5 10 10 N 1.46503 * 109.47348 * 311.52135 * 9 8 7 11 11 C 1.34775 * 120.00333 * 174.95954 * 10 9 8 12 12 O 1.21274 * 119.99817 * 359.97438 * 11 10 9 13 13 C 1.50707 * 119.99915 * 179.97438 * 11 10 9 14 14 S 1.80998 * 109.47066 * 179.97438 * 13 11 10 15 15 C 1.76195 * 100.00090 * 179.97438 * 14 13 11 16 16 H 1.08007 * 119.99920 * 0.02562 * 15 14 13 17 17 C 1.38796 * 119.99954 * 179.97438 * 15 14 13 18 18 N 1.31630 * 120.00180 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99884 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47024 * 60.00800 * 19 17 15 21 21 H 1.48501 * 109.47268 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47598 * 300.00963 * 19 17 15 23 23 C 1.53780 * 113.61541 * 162.71674 * 8 7 5 24 24 C 1.53787 * 87.07957 * 270.88459 * 23 8 7 25 25 C 1.53782 * 113.61449 * 65.21512 * 8 7 5 26 26 H 1.09000 * 109.47305 * 59.99855 * 1 2 3 27 27 H 1.09004 * 109.47447 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47519 * 300.00013 * 1 2 3 29 29 H 1.09001 * 109.47233 * 239.99519 * 2 1 3 30 30 H 1.09001 * 109.47121 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47275 * 299.99938 * 3 2 1 32 32 H 1.09000 * 109.46919 * 60.00191 * 3 2 1 33 33 H 1.09000 * 109.47602 * 305.00172 * 4 2 1 34 34 H 1.09001 * 109.47240 * 184.99778 * 4 2 1 35 35 H 0.97000 * 120.00101 * 354.69443 * 7 5 4 36 36 H 1.08996 * 109.47620 * 71.51889 * 9 8 7 37 37 H 1.09003 * 109.47507 * 191.52198 * 9 8 7 38 38 H 0.97007 * 119.99534 * 354.95633 * 10 9 8 39 39 H 1.08998 * 109.47277 * 299.99658 * 13 11 10 40 40 H 1.08999 * 109.46659 * 60.00169 * 13 11 10 41 41 H 0.97004 * 120.00148 * 179.97438 * 18 17 15 42 42 H 1.09001 * 113.61444 * 25.42814 * 23 8 7 43 43 H 1.09000 * 113.61653 * 156.34003 * 23 8 7 44 44 H 1.08998 * 113.60978 * 220.02275 * 24 23 8 45 45 H 1.08998 * 113.61533 * 89.11421 * 24 23 8 46 46 H 1.08994 * 113.61572 * 203.66721 * 25 8 7 47 47 H 1.09001 * 113.61522 * 334.57429 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 -2.1733 1.1889 6 8 1.0070 -2.5891 0.2426 7 7 1.9852 -3.0087 2.1891 8 6 1.4999 -4.3910 2.1886 9 6 -0.0173 -4.4880 2.3598 10 7 -0.4366 -3.6480 3.4844 11 6 -1.7470 -3.4962 3.7604 12 8 -2.5792 -4.0546 3.0774 13 6 -2.1783 -2.6325 4.9177 14 16 -3.9849 -2.6288 5.0274 15 6 -4.2046 -1.5753 6.4225 16 1 -3.3444 -1.1554 6.9229 17 6 -5.4830 -1.2842 6.8779 18 7 -6.5313 -1.7956 6.2678 19 14 -5.7158 -0.1679 8.3574 20 1 -5.1254 1.1641 8.0703 21 1 -7.1658 -0.0165 8.6400 22 1 -5.0413 -0.7640 9.5384 23 6 2.2882 -5.3210 3.1258 24 6 3.2262 -5.5935 1.9380 25 6 2.0435 -5.2342 1.0230 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1262 -0.6443 1.2953 35 1 2.5541 -2.6947 2.9093 36 1 -0.5084 -4.1467 1.4486 37 1 -0.2953 -5.5235 2.5563 38 1 0.2290 -3.2011 4.0305 39 1 -1.7586 -3.0282 5.8425 40 1 -1.8219 -1.6140 4.7634 41 1 -7.4248 -1.5924 6.5862 42 1 2.7710 -4.8003 3.9528 43 1 1.7247 -6.1970 3.4470 44 1 3.5389 -6.6347 1.8586 45 1 4.0592 -4.8938 1.8699 46 1 1.4130 -6.0864 0.7694 47 1 2.3287 -4.6435 0.1525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062578450.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:41 Heat of formation + Delta-G solvation = -97.573787 kcal Electronic energy + Delta-G solvation = -26297.910810 eV Core-core repulsion = 22605.863351 eV Total energy + Delta-G solvation = -3692.047459 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.81074 -40.41339 -39.37650 -36.38829 -35.52342 -34.58457 -34.21322 -31.48450 -29.37325 -28.18105 -27.98120 -27.57010 -26.73401 -23.88769 -22.31778 -21.71271 -20.72954 -20.22917 -19.81021 -18.12440 -17.96969 -17.53739 -16.87995 -16.81399 -16.56356 -16.41159 -15.86678 -15.73407 -15.58935 -15.03437 -14.71711 -14.63924 -14.60562 -14.45165 -14.07402 -13.48023 -13.26699 -13.25596 -13.17313 -13.07220 -12.86156 -12.79807 -12.67790 -12.59330 -12.10551 -11.87772 -11.85406 -11.74463 -11.72153 -11.58901 -11.33768 -11.12730 -10.99956 -10.58999 -10.28096 -10.12092 -10.02142 -8.67923 -8.34251 -6.13261 1.25906 1.44392 1.46615 1.56123 1.59459 1.71288 2.08473 2.27303 2.32606 2.99829 3.30749 3.39298 3.62418 3.69417 3.80783 3.88805 3.94469 4.01358 4.02056 4.26689 4.33016 4.44676 4.46877 4.49416 4.70381 4.71025 4.72356 4.75143 4.80957 4.83176 4.84924 5.03181 5.05659 5.08712 5.11583 5.13282 5.25620 5.29689 5.39563 5.41230 5.45024 5.49098 5.70799 6.19494 6.47520 6.62415 7.06513 7.22886 7.37528 8.74846 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011671 B = 0.003085 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.517124 B = 9073.226882 C =10583.548078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.077 4.077 3 C -0.143 4.143 4 C -0.133 4.133 5 C 0.509 3.491 6 O -0.568 6.568 7 N -0.700 5.700 8 C 0.140 3.860 9 C 0.127 3.873 10 N -0.702 5.702 11 C 0.530 3.470 12 O -0.569 6.569 13 C -0.125 4.125 14 S -0.155 6.155 15 C -0.546 4.546 16 H 0.085 0.915 17 C 0.013 3.987 18 N -0.913 5.913 19 Si 1.000 3.000 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.260 1.260 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.139 4.139 26 H 0.050 0.950 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.420 0.580 36 H 0.039 0.961 37 H 0.070 0.930 38 H 0.414 0.586 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.271 0.729 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.199 0.382 -6.032 29.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.096 4.096 3 C -0.200 4.200 4 C -0.172 4.172 5 C 0.298 3.702 6 O -0.446 6.446 7 N -0.355 5.355 8 C 0.053 3.947 9 C 0.002 3.998 10 N -0.355 5.355 11 C 0.316 3.684 12 O -0.448 6.448 13 C -0.276 4.276 14 S 0.072 5.928 15 C -0.694 4.694 16 H 0.103 0.897 17 C -0.192 4.192 18 N -0.549 5.549 19 Si 0.821 3.179 20 H -0.186 1.186 21 H -0.205 1.205 22 H -0.184 1.184 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.178 4.178 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.143 0.857 35 H 0.258 0.742 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.251 0.749 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.080 0.920 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.101 0.899 45 H 0.110 0.890 46 H 0.104 0.896 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 27.206 -0.851 -7.848 28.328 hybrid contribution 0.324 1.329 1.592 2.099 sum 27.531 0.477 -6.256 28.237 Atomic orbital electron populations 1.21941 0.96711 1.01356 1.01157 1.20811 0.94771 0.96751 0.97292 1.21818 1.01730 0.94197 1.02241 1.21837 1.04696 0.89766 1.00916 1.21288 0.78188 0.89269 0.81499 1.90694 1.40620 1.78576 1.34703 1.45583 1.53032 1.09922 1.26927 1.21546 0.89874 0.83051 1.00258 1.21596 0.95049 0.94703 0.88486 1.45503 1.05823 1.51154 1.33042 1.20176 0.82954 0.80712 0.84599 1.90696 1.53087 1.49286 1.51723 1.23332 1.01475 1.02838 0.99980 1.85677 0.99807 1.65356 1.41957 1.23174 0.96038 1.34132 1.16055 0.89710 1.26159 0.94367 0.97753 1.00924 1.70190 0.99055 1.44005 1.41672 0.84987 0.77433 0.78243 0.77228 1.18560 1.20534 1.18443 1.23259 0.97037 0.98640 0.97171 1.22791 0.96085 1.02892 0.94394 1.23188 0.98646 0.99108 0.96893 0.93098 0.93944 0.93270 0.91943 0.90885 0.92749 0.92119 0.87449 0.85684 0.74182 0.94216 0.91142 0.74940 0.86839 0.87440 0.92014 0.88171 0.88304 0.89934 0.89000 0.89643 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 8.93 71.98 0.64 -3.10 16 2 C -0.08 -1.35 2.57 -10.79 -0.03 -1.38 16 3 C -0.14 -1.80 9.19 71.98 0.66 -1.14 16 4 C -0.13 -1.71 5.18 29.85 0.15 -1.56 16 5 C 0.51 9.72 7.11 87.66 0.62 10.35 16 6 O -0.57 -16.52 11.95 -3.01 -0.04 -16.55 16 7 N -0.70 -9.02 4.53 -420.54 -1.91 -10.92 16 8 C 0.14 2.26 0.63 4.13 0.00 2.27 16 9 C 0.13 3.27 4.92 86.38 0.43 3.70 16 10 N -0.70 -18.50 5.38 -463.07 -2.49 -20.99 16 11 C 0.53 20.48 7.85 87.66 0.69 21.17 16 12 O -0.57 -28.21 15.86 -3.01 -0.05 -28.26 16 13 C -0.13 -5.01 6.16 71.24 0.44 -4.57 16 14 S -0.16 -8.77 20.57 -56.49 -1.16 -9.93 16 15 C -0.55 -31.27 9.50 67.95 0.65 -30.62 16 16 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 17 C 0.01 0.72 5.49 84.86 0.47 1.19 16 18 N -0.91 -56.68 13.22 21.65 0.29 -56.39 16 19 Si 1.00 43.44 29.55 68.60 2.03 45.46 16 20 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 23 C -0.12 -1.18 7.37 31.12 0.23 -0.95 16 24 C -0.12 -1.19 7.99 31.12 0.25 -0.94 16 25 C -0.14 -2.33 6.95 31.12 0.22 -2.11 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.04 1.32 5.94 -2.39 -0.01 1.31 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.26 7.96 -2.39 -0.02 1.24 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.42 2.15 8.67 -92.71 -0.80 1.35 16 36 H 0.04 1.38 7.34 -2.39 -0.02 1.36 16 37 H 0.07 1.85 7.94 -2.39 -0.02 1.83 16 38 H 0.41 7.58 8.11 -92.70 -0.75 6.82 16 39 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 40 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 41 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 42 H 0.10 0.50 8.09 -2.39 -0.02 0.48 16 43 H 0.10 1.03 7.96 -2.39 -0.02 1.01 16 44 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.09 1.50 8.10 -2.39 -0.02 1.48 16 47 H 0.06 1.24 7.19 -2.39 -0.02 1.23 16 Total: -1.00 -85.11 395.23 1.50 -83.62 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -0.59 Total: 21.67 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 5.42 Total: -7.70 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -4.11 Total: -88.31 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -0.08 Total: -44.81 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -85.11 1.50 -83.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062578450.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.958 kcal (2) G-P(sol) polarization free energy of solvation -85.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds