Wall clock time and date at job start Tue Mar 31 2020 16:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46933 * 2 1 4 4 C 1.53002 * 109.47229 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47270 * 180.02562 * 4 3 2 6 6 O 1.21275 * 119.99869 * 359.97438 * 5 4 3 7 7 N 1.34783 * 119.99700 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99806 * 174.96614 * 7 5 4 9 9 C 1.53002 * 112.85302 * 65.35704 * 8 7 5 10 10 N 1.46505 * 109.46709 * 49.24994 * 9 8 7 11 11 C 1.34780 * 119.99496 * 174.93116 * 10 9 8 12 12 O 1.21278 * 120.00220 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99587 * 179.97438 * 11 10 9 14 14 S 1.81001 * 109.47074 * 180.02562 * 13 11 10 15 15 C 1.76201 * 100.00133 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00168 * 359.97438 * 15 14 13 17 17 C 1.38796 * 119.99945 * 179.97438 * 15 14 13 18 18 N 1.31623 * 120.00332 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99960 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46962 * 59.99957 * 19 17 15 21 21 H 1.48500 * 109.47206 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46753 * 300.00377 * 19 17 15 23 23 C 1.53783 * 113.61616 * 196.55811 * 8 7 5 24 24 C 1.53955 * 87.02116 * 89.22409 * 23 8 7 25 25 C 1.53779 * 113.61097 * 294.16445 * 8 7 5 26 26 H 1.08995 * 109.46912 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47489 * 299.99961 * 1 2 3 28 28 H 1.09009 * 109.47004 * 59.99745 * 1 2 3 29 29 H 1.09003 * 109.47237 * 240.00486 * 2 1 3 30 30 H 1.08999 * 109.47005 * 120.00271 * 2 1 3 31 31 H 1.09003 * 109.46762 * 60.00195 * 3 2 1 32 32 H 1.08999 * 109.47497 * 299.99970 * 3 2 1 33 33 H 1.08997 * 109.46705 * 59.99815 * 4 3 2 34 34 H 1.09009 * 109.47031 * 300.00453 * 4 3 2 35 35 H 0.97001 * 120.00151 * 354.95872 * 7 5 4 36 36 H 1.08999 * 109.47038 * 289.25000 * 9 8 7 37 37 H 1.08997 * 109.47120 * 169.24685 * 9 8 7 38 38 H 0.96991 * 120.00017 * 355.20924 * 10 9 8 39 39 H 1.09005 * 109.47344 * 300.00329 * 13 11 10 40 40 H 1.09004 * 109.47329 * 60.00424 * 13 11 10 41 41 H 0.97003 * 120.00362 * 179.97438 * 18 17 15 42 42 H 1.08997 * 113.61785 * 203.74635 * 23 8 7 43 43 H 1.08998 * 113.60963 * 334.65040 * 23 8 7 44 44 H 1.09003 * 113.54247 * 270.81880 * 24 23 8 45 45 H 1.08999 * 113.66710 * 139.93171 * 24 23 8 46 46 H 1.09002 * 113.61900 * 25.35189 * 25 8 7 47 47 H 1.09005 * 113.61722 * 156.25477 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8634 0.0013 6 8 3.2842 3.7851 0.0008 7 7 5.3974 3.1096 0.0014 8 6 5.8866 4.4860 -0.1093 9 6 5.5105 5.3492 1.0967 10 7 5.8596 4.6419 2.3313 11 6 5.7127 5.2539 3.5231 12 8 5.2919 6.3902 3.5734 13 6 6.0713 4.5261 4.7930 14 16 5.7650 5.6050 6.2137 15 6 6.2557 4.5332 7.5233 16 1 6.6124 3.5381 7.3018 17 6 6.1839 4.9677 8.8395 18 7 5.7487 6.1802 9.1096 19 14 6.7048 3.8317 10.2279 20 1 8.1306 3.4560 10.0515 21 1 6.5332 4.5281 11.5282 22 1 5.8642 2.6076 10.2077 23 6 7.3717 4.5827 -0.4968 24 6 6.9064 4.5757 -1.9644 25 6 5.5693 5.1456 -1.4618 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 0.9286 -0.8891 34 1 3.9330 0.9288 0.8909 35 1 6.0272 2.3755 0.0749 36 1 4.4386 5.5468 1.0819 37 1 6.0546 6.2926 1.0522 38 1 6.2003 3.7347 2.2906 39 1 5.4610 3.6273 4.8815 40 1 7.1252 4.2487 4.7676 41 1 5.6981 6.4838 10.0295 42 1 7.8424 5.5175 -0.1925 43 1 7.9537 3.7043 -0.2182 44 1 6.8223 3.5756 -2.3897 45 1 7.4615 5.2630 -2.6027 46 1 4.6984 4.7210 -1.9610 47 1 5.5464 6.2347 -1.4218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062578531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:44 Heat of formation + Delta-G solvation = -76.373307 kcal Electronic energy + Delta-G solvation = -25725.094942 eV Core-core repulsion = 22033.966805 eV Total energy + Delta-G solvation = -3691.128137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.97677 -38.97150 -38.38069 -35.56822 -34.18523 -33.41325 -32.41210 -30.77073 -29.84810 -27.31144 -26.15081 -25.46858 -25.05527 -22.83824 -21.55771 -20.72727 -20.19724 -19.44931 -17.88691 -17.26859 -16.67016 -16.32345 -16.16108 -15.61439 -15.22573 -15.06780 -14.79043 -14.65730 -14.38732 -14.04417 -13.90710 -13.69474 -13.29308 -13.08501 -12.74622 -12.67742 -12.59232 -12.57930 -12.09450 -11.71151 -11.60967 -11.50809 -11.30331 -11.25093 -11.16258 -11.02952 -11.02822 -10.86100 -10.75502 -10.70216 -9.91135 -9.81323 -9.41771 -9.23093 -9.04616 -8.74095 -8.20865 -6.47449 -6.19575 -3.90026 2.45016 2.75832 3.09280 3.18154 3.24174 3.28556 3.33189 3.74487 4.07346 4.22192 4.25728 4.40257 4.47382 4.52628 4.55697 4.65046 4.92174 4.98387 5.06417 5.15186 5.15691 5.22165 5.31824 5.36233 5.41067 5.51230 5.52816 5.54634 5.56700 5.65322 5.65883 5.69357 5.71922 5.87972 5.88960 5.91591 5.97427 6.03352 6.10544 6.15246 6.34218 6.70540 7.21733 7.60522 7.78118 8.03034 8.36538 8.69449 9.25248 10.87798 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010191 B = 0.002854 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.945890 B = 9806.800707 C =11743.792422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.141 4.141 5 C 0.515 3.485 6 O -0.523 6.523 7 N -0.716 5.716 8 C 0.141 3.859 9 C 0.124 3.876 10 N -0.732 5.732 11 C 0.530 3.470 12 O -0.517 6.517 13 C -0.152 4.152 14 S -0.059 6.059 15 C -0.536 4.536 16 H 0.071 0.929 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.135 4.135 24 C -0.139 4.139 25 C -0.132 4.132 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.401 0.599 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.393 0.607 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.269 0.731 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.199 -12.952 -25.246 28.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.181 4.181 5 C 0.301 3.699 6 O -0.398 6.398 7 N -0.369 5.369 8 C 0.053 3.947 9 C -0.001 4.001 10 N -0.386 5.386 11 C 0.316 3.684 12 O -0.391 6.391 13 C -0.302 4.302 14 S 0.168 5.832 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.173 4.173 24 C -0.177 4.177 25 C -0.171 4.171 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.236 0.764 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.226 0.774 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.118 0.882 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.150 -10.224 -25.037 27.069 hybrid contribution 1.365 -2.909 0.889 3.334 sum 0.215 -13.133 -24.149 27.489 Atomic orbital electron populations 1.21764 0.95651 1.01535 1.02141 1.21542 0.96253 0.96526 1.01886 1.21383 0.92504 0.96697 1.03800 1.21716 0.98420 0.93642 1.04294 1.20768 0.81841 0.91865 0.75396 1.90735 1.55060 1.46352 1.47653 1.45744 1.07325 1.07634 1.76225 1.21579 0.95307 0.82790 0.94974 1.21567 1.02202 0.94522 0.81832 1.45817 1.69069 1.18163 1.05548 1.20280 0.77147 0.86750 0.84213 1.90702 1.43690 1.18039 1.86717 1.23514 1.04267 1.04406 0.98059 1.85422 1.85861 1.18975 0.92980 1.22827 1.50730 1.02151 0.92735 0.91045 1.24989 0.94839 0.95598 0.98150 1.70007 1.43364 1.16624 1.20280 0.86231 0.79086 0.80122 0.80084 1.19960 1.20804 1.19955 1.23303 0.94053 1.03639 0.96330 1.22878 0.97079 1.01503 0.96231 1.23161 0.98107 1.01158 0.94650 0.92801 0.92467 0.92730 0.92161 0.91897 0.90942 0.91282 0.89050 0.88834 0.76428 0.90277 0.90726 0.77382 0.89479 0.89395 0.92130 0.88248 0.90733 0.90223 0.90937 0.90638 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.11 -0.89 4.50 -26.73 -0.12 -1.01 16 4 C -0.14 -0.96 5.70 -27.88 -0.16 -1.12 16 5 C 0.51 5.07 7.32 -10.98 -0.08 4.99 16 6 O -0.52 -7.50 14.07 5.56 0.08 -7.42 16 7 N -0.72 -5.39 4.44 -46.86 -0.21 -5.60 16 8 C 0.14 1.26 0.66 -131.01 -0.09 1.17 16 9 C 0.12 1.64 4.86 -4.04 -0.02 1.62 16 10 N -0.73 -10.42 5.44 -60.29 -0.33 -10.74 16 11 C 0.53 10.42 7.85 -10.99 -0.09 10.33 16 12 O -0.52 -12.40 15.86 5.56 0.09 -12.32 16 13 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 14 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 15 C -0.54 -15.45 9.50 30.94 0.29 -15.16 16 16 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 17 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 19 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 C -0.14 -0.92 7.38 -25.83 -0.19 -1.11 16 24 C -0.14 -0.87 8.00 -25.82 -0.21 -1.07 16 25 C -0.13 -1.13 7.03 -25.92 -0.18 -1.31 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.07 0.64 8.10 -51.93 -0.42 0.21 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.40 1.81 8.66 -40.82 -0.35 1.45 16 36 H 0.08 1.30 6.99 -51.93 -0.36 0.94 16 37 H 0.07 1.02 7.95 -51.93 -0.41 0.60 16 38 H 0.39 4.41 7.97 -40.82 -0.33 4.08 16 39 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 40 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 41 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.10 0.72 7.97 -51.93 -0.41 0.31 16 43 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.74 7.55 -51.93 -0.39 0.35 16 47 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 399.93 15.07 6.03 6.03 Total: -1.00 -36.87 399.93 -9.48 -46.36 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -8.14 Total: 2.04 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -0.50 Total: -5.27 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.20 Total: -42.08 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.17 Total: -19.74 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.87 -9.48 -46.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062578531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.015 kcal (2) G-P(sol) polarization free energy of solvation -36.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds