Wall clock time and date at job start Tue Mar 31 2020 16:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46933 * 2 1 4 4 C 1.53002 * 109.47229 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47270 * 180.02562 * 4 3 2 6 6 O 1.21275 * 119.99869 * 359.97438 * 5 4 3 7 7 N 1.34783 * 119.99700 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99806 * 174.96614 * 7 5 4 9 9 C 1.53002 * 112.85302 * 65.35704 * 8 7 5 10 10 N 1.46505 * 109.46709 * 49.24994 * 9 8 7 11 11 C 1.34780 * 119.99496 * 174.93116 * 10 9 8 12 12 O 1.21278 * 120.00220 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99587 * 179.97438 * 11 10 9 14 14 S 1.81001 * 109.47074 * 180.02562 * 13 11 10 15 15 C 1.76201 * 100.00133 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00168 * 359.97438 * 15 14 13 17 17 C 1.38796 * 119.99945 * 179.97438 * 15 14 13 18 18 N 1.31623 * 120.00332 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99960 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46962 * 59.99957 * 19 17 15 21 21 H 1.48500 * 109.47206 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46753 * 300.00377 * 19 17 15 23 23 C 1.53783 * 113.61616 * 196.55811 * 8 7 5 24 24 C 1.53955 * 87.02116 * 89.22409 * 23 8 7 25 25 C 1.53779 * 113.61097 * 294.16445 * 8 7 5 26 26 H 1.08995 * 109.46912 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47489 * 299.99961 * 1 2 3 28 28 H 1.09009 * 109.47004 * 59.99745 * 1 2 3 29 29 H 1.09003 * 109.47237 * 240.00486 * 2 1 3 30 30 H 1.08999 * 109.47005 * 120.00271 * 2 1 3 31 31 H 1.09003 * 109.46762 * 60.00195 * 3 2 1 32 32 H 1.08999 * 109.47497 * 299.99970 * 3 2 1 33 33 H 1.08997 * 109.46705 * 59.99815 * 4 3 2 34 34 H 1.09009 * 109.47031 * 300.00453 * 4 3 2 35 35 H 0.97001 * 120.00151 * 354.95872 * 7 5 4 36 36 H 1.08999 * 109.47038 * 289.25000 * 9 8 7 37 37 H 1.08997 * 109.47120 * 169.24685 * 9 8 7 38 38 H 0.96991 * 120.00017 * 355.20924 * 10 9 8 39 39 H 1.09005 * 109.47344 * 300.00329 * 13 11 10 40 40 H 1.09004 * 109.47329 * 60.00424 * 13 11 10 41 41 H 0.97003 * 120.00362 * 179.97438 * 18 17 15 42 42 H 1.08997 * 113.61785 * 203.74635 * 23 8 7 43 43 H 1.08998 * 113.60963 * 334.65040 * 23 8 7 44 44 H 1.09003 * 113.54247 * 270.81880 * 24 23 8 45 45 H 1.08999 * 113.66710 * 139.93171 * 24 23 8 46 46 H 1.09002 * 113.61900 * 25.35189 * 25 8 7 47 47 H 1.09005 * 113.61722 * 156.25477 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8634 0.0013 6 8 3.2842 3.7851 0.0008 7 7 5.3974 3.1096 0.0014 8 6 5.8866 4.4860 -0.1093 9 6 5.5105 5.3492 1.0967 10 7 5.8596 4.6419 2.3313 11 6 5.7127 5.2539 3.5231 12 8 5.2919 6.3902 3.5734 13 6 6.0713 4.5261 4.7930 14 16 5.7650 5.6050 6.2137 15 6 6.2557 4.5332 7.5233 16 1 6.6124 3.5381 7.3018 17 6 6.1839 4.9677 8.8395 18 7 5.7487 6.1802 9.1096 19 14 6.7048 3.8317 10.2279 20 1 8.1306 3.4560 10.0515 21 1 6.5332 4.5281 11.5282 22 1 5.8642 2.6076 10.2077 23 6 7.3717 4.5827 -0.4968 24 6 6.9064 4.5757 -1.9644 25 6 5.5693 5.1456 -1.4618 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 0.9286 -0.8891 34 1 3.9330 0.9288 0.8909 35 1 6.0272 2.3755 0.0749 36 1 4.4386 5.5468 1.0819 37 1 6.0546 6.2926 1.0522 38 1 6.2003 3.7347 2.2906 39 1 5.4610 3.6273 4.8815 40 1 7.1252 4.2487 4.7676 41 1 5.6981 6.4838 10.0295 42 1 7.8424 5.5175 -0.1925 43 1 7.9537 3.7043 -0.2182 44 1 6.8223 3.5756 -2.3897 45 1 7.4615 5.2630 -2.6027 46 1 4.6984 4.7210 -1.9610 47 1 5.5464 6.2347 -1.4218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062578531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:44 Heat of formation + Delta-G solvation = -102.638969 kcal Electronic energy + Delta-G solvation = -25726.233907 eV Core-core repulsion = 22033.966805 eV Total energy + Delta-G solvation = -3692.267101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.79484 -40.38845 -39.25252 -36.19603 -35.52595 -34.58977 -34.22634 -31.61394 -31.14948 -28.48509 -27.61063 -26.78357 -25.77165 -23.63691 -22.21923 -21.80529 -21.24967 -20.26308 -19.81526 -18.00984 -17.98268 -17.56758 -16.91327 -16.88399 -16.71063 -16.48558 -15.99573 -15.73862 -15.37044 -15.21900 -14.85769 -14.69961 -14.53277 -14.45945 -13.96438 -13.69786 -13.42441 -13.29385 -13.22744 -13.17850 -12.86443 -12.76850 -12.61211 -12.19244 -12.08608 -11.90662 -11.87444 -11.84413 -11.73962 -11.45558 -11.37379 -11.13151 -11.00974 -10.75444 -10.29108 -10.15117 -10.02486 -8.68645 -8.34620 -6.13810 1.25306 1.44260 1.46148 1.55853 1.58323 1.69122 2.05249 2.26877 2.31602 2.99368 3.29859 3.38493 3.59920 3.69411 3.80968 3.91207 3.93469 3.99660 4.06633 4.25753 4.31826 4.43323 4.45834 4.47371 4.50006 4.64623 4.73856 4.79506 4.80540 4.82203 4.94005 5.01224 5.03177 5.08860 5.10513 5.11408 5.24713 5.28133 5.38387 5.38860 5.40827 5.49532 5.67388 6.19155 6.45982 6.59899 7.06018 7.21347 7.34116 8.74521 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010191 B = 0.002854 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.945890 B = 9806.800707 C =11743.792422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.119 4.119 3 C -0.105 4.105 4 C -0.133 4.133 5 C 0.508 3.492 6 O -0.577 6.577 7 N -0.700 5.700 8 C 0.140 3.860 9 C 0.126 3.874 10 N -0.702 5.702 11 C 0.530 3.470 12 O -0.569 6.569 13 C -0.125 4.125 14 S -0.155 6.155 15 C -0.546 4.546 16 H 0.085 0.915 17 C 0.012 3.988 18 N -0.913 5.913 19 Si 1.001 2.999 20 H -0.260 1.260 21 H -0.280 1.280 22 H -0.262 1.262 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.139 4.139 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.421 0.579 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.412 0.588 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.271 0.729 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.059 0.941 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 -16.776 -26.359 31.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.156 4.156 3 C -0.144 4.144 4 C -0.172 4.172 5 C 0.296 3.704 6 O -0.455 6.455 7 N -0.354 5.354 8 C 0.052 3.948 9 C 0.001 3.999 10 N -0.356 5.356 11 C 0.315 3.685 12 O -0.448 6.448 13 C -0.276 4.276 14 S 0.072 5.928 15 C -0.694 4.694 16 H 0.103 0.897 17 C -0.193 4.193 18 N -0.549 5.549 19 Si 0.822 3.178 20 H -0.184 1.184 21 H -0.205 1.205 22 H -0.186 1.186 23 C -0.163 4.163 24 C -0.160 4.160 25 C -0.178 4.178 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.143 0.857 34 H 0.132 0.868 35 H 0.260 0.740 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.249 0.751 39 H 0.124 0.876 40 H 0.133 0.867 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.101 0.899 46 H 0.078 0.922 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.299 -14.128 -26.200 29.795 hybrid contribution 0.558 -1.695 1.102 2.098 sum 1.857 -15.824 -25.097 29.727 Atomic orbital electron populations 1.21804 0.96276 1.02023 1.01397 1.21514 0.95738 0.95275 1.03075 1.21332 0.94021 0.97451 1.01558 1.21746 0.96938 0.91785 1.06768 1.21418 0.82072 0.92643 0.74247 1.90732 1.56534 1.48160 1.50124 1.45608 1.07102 1.07619 1.75074 1.21571 0.97469 0.82952 0.92816 1.21614 0.99867 0.95611 0.82841 1.45513 1.67034 1.18704 1.04317 1.20178 0.76871 0.86101 0.85308 1.90691 1.46330 1.20297 1.87440 1.23334 1.06196 1.03016 0.95097 1.85666 1.86655 1.23077 0.97391 1.23170 1.50728 1.02449 0.93041 0.89722 1.26172 0.94493 0.97323 1.01285 1.70186 1.44737 1.18984 1.21003 0.84975 0.79302 0.77728 0.75802 1.18406 1.20487 1.18614 1.23283 0.92034 1.04629 0.96328 1.22826 0.94770 1.02320 0.96067 1.23200 0.99222 1.00878 0.94519 0.91640 0.93823 0.92973 0.90253 0.91232 0.94105 0.92788 0.85718 0.86837 0.74034 0.94009 0.91337 0.75084 0.87561 0.86746 0.91992 0.88650 0.88205 0.88661 0.89895 0.92210 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.91 71.98 0.71 -1.41 16 2 C -0.12 -1.39 5.93 30.60 0.18 -1.21 16 3 C -0.11 -1.72 4.50 30.59 0.14 -1.59 16 4 C -0.13 -1.50 5.70 29.85 0.17 -1.32 16 5 C 0.51 9.45 7.32 87.65 0.64 10.09 16 6 O -0.58 -17.20 14.07 -3.01 -0.04 -17.24 16 7 N -0.70 -8.80 4.44 -420.55 -1.87 -10.66 16 8 C 0.14 2.30 0.66 4.13 0.00 2.30 16 9 C 0.13 3.36 4.86 86.38 0.42 3.78 16 10 N -0.70 -19.28 5.44 -463.05 -2.52 -21.80 16 11 C 0.53 20.85 7.85 87.66 0.69 21.54 16 12 O -0.57 -28.42 15.86 -3.02 -0.05 -28.46 16 13 C -0.13 -5.09 6.16 71.23 0.44 -4.65 16 14 S -0.15 -8.83 20.57 -56.49 -1.16 -9.99 16 15 C -0.55 -31.43 9.50 67.95 0.65 -30.79 16 16 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 17 C 0.01 0.68 5.49 84.86 0.47 1.15 16 18 N -0.91 -56.84 13.22 21.65 0.29 -56.55 16 19 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 23 C -0.13 -1.29 7.38 31.18 0.23 -1.06 16 24 C -0.12 -1.15 8.00 31.18 0.25 -0.90 16 25 C -0.14 -2.28 7.03 31.12 0.22 -2.06 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.04 0.91 8.10 -2.39 -0.02 0.89 16 32 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 33 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.42 1.97 8.66 -92.71 -0.80 1.17 16 36 H 0.04 1.47 6.99 -2.39 -0.02 1.45 16 37 H 0.07 1.92 7.95 -2.39 -0.02 1.91 16 38 H 0.41 8.08 7.97 -92.71 -0.74 7.35 16 39 H 0.11 3.92 8.14 -2.39 -0.02 3.91 16 40 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 41 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 42 H 0.10 1.13 7.97 -2.39 -0.02 1.11 16 43 H 0.10 0.58 8.09 -2.39 -0.02 0.57 16 44 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.06 1.18 7.55 -2.39 -0.02 1.16 16 47 H 0.09 1.51 8.10 -2.38 -0.02 1.49 16 Total: -1.00 -86.15 399.93 1.30 -84.85 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -0.58 Total: 20.33 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 5.20 Total: -6.13 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -4.10 Total: -89.01 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -0.09 Total: -45.70 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -9.99 kcal Total: -86.15 1.30 -84.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062578531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.785 kcal (2) G-P(sol) polarization free energy of solvation -86.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds