Wall clock time and date at job start Tue Mar 31 2020 16:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47169 * 2 1 4 4 C 1.53003 * 109.47379 * 240.00138 * 2 1 3 5 5 C 1.50697 * 109.46858 * 120.00161 * 2 1 3 6 6 O 1.21283 * 120.00410 * 0.02562 * 5 2 1 7 7 N 1.34778 * 119.99733 * 180.02562 * 5 2 1 8 8 C 1.46501 * 119.99983 * 180.02562 * 7 5 2 9 9 C 1.53001 * 109.47567 * 182.72777 * 8 7 5 10 10 N 1.46502 * 112.84245 * 293.95349 * 9 8 7 11 11 C 1.34770 * 120.00232 * 294.93632 * 10 9 8 12 12 O 1.21281 * 120.00044 * 354.98485 * 11 10 9 13 13 C 1.50701 * 120.00273 * 174.97938 * 11 10 9 14 14 S 1.80999 * 109.47433 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00295 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99584 * 359.97438 * 15 14 13 17 17 C 1.38798 * 120.00096 * 179.97438 * 15 14 13 18 18 N 1.31628 * 119.99830 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46949 * 60.00464 * 19 17 15 21 21 H 1.48503 * 109.47013 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47589 * 300.00115 * 19 17 15 23 23 C 1.53776 * 113.61755 * 162.75832 * 9 8 7 24 24 C 1.53963 * 87.01931 * 220.04561 * 23 9 8 25 25 C 1.53781 * 113.61594 * 65.14226 * 9 8 7 26 26 H 1.08995 * 109.47188 * 299.99799 * 1 2 3 27 27 H 1.09005 * 109.46753 * 60.00113 * 1 2 3 28 28 H 1.08998 * 109.47187 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47344 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47619 * 300.00013 * 3 2 1 31 31 H 1.09004 * 109.47003 * 59.99856 * 3 2 1 32 32 H 1.09006 * 109.47013 * 300.00429 * 4 2 1 33 33 H 1.09002 * 109.46844 * 59.99620 * 4 2 1 34 34 H 1.08994 * 109.47223 * 180.02562 * 4 2 1 35 35 H 0.96994 * 120.00189 * 359.97438 * 7 5 2 36 36 H 1.09009 * 109.47087 * 302.72674 * 8 7 5 37 37 H 1.09002 * 109.47559 * 62.72360 * 8 7 5 38 38 H 0.97002 * 120.00196 * 114.94831 * 10 9 8 39 39 H 1.08999 * 109.47012 * 300.00251 * 13 11 10 40 40 H 1.08995 * 109.47155 * 60.00400 * 13 11 10 41 41 H 0.97007 * 119.99652 * 179.97438 * 18 17 15 42 42 H 1.08995 * 113.61248 * 334.56075 * 23 9 8 43 43 H 1.08996 * 113.61982 * 105.47165 * 23 9 8 44 44 H 1.08993 * 113.53503 * 270.81024 * 24 23 9 45 45 H 1.08994 * 113.66760 * 139.92695 * 24 23 9 46 46 H 1.08998 * 113.61916 * 254.53470 * 25 9 8 47 47 H 1.09004 * 113.60880 * 25.43958 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 8 1.2442 -1.1718 2.0285 7 7 3.3574 -0.8331 1.4440 8 6 3.8457 -1.5243 2.6398 9 6 5.3741 -1.4645 2.6752 10 7 5.9981 -2.2176 1.5844 11 6 5.8598 -3.5568 1.5247 12 8 5.2970 -4.1488 2.4212 13 6 6.4043 -4.3188 0.3441 14 16 6.0634 -6.0838 0.5557 15 6 6.7869 -6.7146 -0.9218 16 1 7.2550 -6.0407 -1.6242 17 6 6.7555 -8.0774 -1.1830 18 7 6.1855 -8.8986 -0.3267 19 14 7.5220 -8.7460 -2.7498 20 1 8.9679 -8.4089 -2.7763 21 1 7.3573 -10.2213 -2.7910 22 1 6.8507 -8.1394 -3.9273 23 6 5.9710 -1.7746 4.0580 24 6 6.9805 -0.6442 3.7867 25 6 5.9314 -0.0405 2.8381 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 3.9877 -0.4645 0.8055 36 1 3.4425 -1.0401 3.5294 37 1 3.5233 -2.5652 2.6151 38 1 6.5110 -1.7523 0.9051 39 1 5.9265 -3.9638 -0.5691 40 1 7.4807 -4.1620 0.2756 41 1 6.1632 -9.8510 -0.5094 42 1 5.2916 -1.5641 4.8839 43 1 6.4275 -2.7620 4.1252 44 1 7.8849 -0.9808 3.2800 45 1 7.1884 -0.0246 4.6590 46 1 6.3559 0.3698 1.9219 47 1 5.2410 0.6448 3.3300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001064474352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:56 Heat of formation + Delta-G solvation = -71.247489 kcal Electronic energy + Delta-G solvation = -26533.588929 eV Core-core repulsion = 22842.683064 eV Total energy + Delta-G solvation = -3690.905865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.81923 -39.83436 -37.85704 -35.77532 -34.50227 -33.06760 -32.44396 -29.42500 -28.08845 -27.63487 -27.15933 -26.00037 -25.50165 -23.65113 -22.18191 -20.81050 -19.67743 -19.05961 -17.87248 -17.07044 -16.43534 -16.34687 -15.76908 -15.41655 -15.31959 -14.82305 -14.65215 -14.51669 -14.08371 -14.04789 -14.01212 -13.49070 -13.22366 -12.80594 -12.63431 -12.57536 -12.52001 -12.36312 -12.23174 -12.11043 -11.96186 -11.76401 -11.20411 -11.19408 -11.12373 -11.06457 -11.05435 -10.95865 -10.78653 -10.54110 -9.84560 -9.72808 -9.41586 -9.08597 -9.05106 -8.90418 -8.25839 -6.51678 -6.23027 -3.93887 2.61889 2.90389 3.03445 3.08181 3.21919 3.25574 3.28379 3.62586 4.17502 4.19349 4.34162 4.46307 4.50186 4.57740 4.62168 4.68336 4.96378 5.04120 5.12084 5.23564 5.24819 5.33263 5.37636 5.44603 5.47812 5.48776 5.55407 5.62111 5.64503 5.66028 5.68184 5.78710 5.83278 5.87268 5.95907 5.98099 6.05091 6.08224 6.09899 6.10168 6.36829 6.67226 7.42099 7.57165 7.63202 8.19062 8.33028 8.56695 9.22062 10.84273 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011366 B = 0.003321 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.980482 B = 8428.423778 C = 9973.106484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 C -0.138 4.138 4 C -0.142 4.142 5 C 0.520 3.480 6 O -0.538 6.538 7 N -0.721 5.721 8 C 0.119 3.881 9 C 0.143 3.857 10 N -0.721 5.721 11 C 0.535 3.465 12 O -0.506 6.506 13 C -0.153 4.153 14 S -0.057 6.057 15 C -0.538 4.538 16 H 0.071 0.929 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.134 4.134 24 C -0.138 4.138 25 C -0.136 4.136 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.397 0.603 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.398 0.602 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.269 0.731 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.506 24.624 1.286 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.090 4.090 3 C -0.196 4.196 4 C -0.199 4.199 5 C 0.306 3.694 6 O -0.414 6.414 7 N -0.372 5.372 8 C -0.005 4.005 9 C 0.056 3.944 10 N -0.376 5.376 11 C 0.322 3.678 12 O -0.379 6.379 13 C -0.304 4.304 14 S 0.170 5.830 15 C -0.686 4.686 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.744 3.256 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.173 4.173 24 C -0.176 4.176 25 C -0.174 4.174 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.231 0.769 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.233 0.767 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.086 23.076 3.422 23.683 hybrid contribution 1.782 0.552 -2.741 3.316 sum -2.305 23.628 0.680 23.750 Atomic orbital electron populations 1.21656 0.91966 1.03049 1.01828 1.20821 0.98120 0.96253 0.93813 1.21852 1.01031 0.93907 1.02795 1.21876 1.01205 1.01028 0.95803 1.20560 0.82117 0.79481 0.87221 1.90707 1.55305 1.48346 1.47083 1.45856 1.06974 1.58814 1.25596 1.21661 0.92132 0.99120 0.87599 1.21440 0.90969 0.92641 0.89387 1.45735 1.56195 1.07086 1.28545 1.20295 0.78797 0.81160 0.87588 1.90711 1.40904 1.67905 1.38396 1.23534 1.03682 1.04892 0.98302 1.85433 1.76349 0.90958 1.30276 1.22821 1.43422 0.95194 1.07146 0.91035 1.24983 0.95147 0.95803 0.97571 1.70007 1.41177 1.03916 1.35110 0.86235 0.79521 0.77825 0.81989 1.19946 1.20786 1.19937 1.23201 0.98226 1.00399 0.95434 1.22860 0.97352 0.97817 0.99542 1.23214 0.98918 0.94700 1.00554 0.92033 0.92102 0.91774 0.92273 0.91376 0.92122 0.91672 0.91354 0.92180 0.76950 0.90672 0.89779 0.76709 0.89359 0.89363 0.92096 0.89234 0.89715 0.89958 0.91127 0.90914 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 7.76 37.16 0.29 -0.93 16 2 C -0.09 -0.81 0.87 -155.66 -0.14 -0.94 16 3 C -0.14 -0.91 8.37 37.16 0.31 -0.60 16 4 C -0.14 -1.22 8.37 37.16 0.31 -0.91 16 5 C 0.52 6.62 6.48 -10.99 -0.07 6.55 16 6 O -0.54 -9.21 15.98 5.55 0.09 -9.12 16 7 N -0.72 -7.80 5.21 -60.29 -0.31 -8.11 16 8 C 0.12 1.51 4.99 -4.04 -0.02 1.49 16 9 C 0.14 1.52 0.50 -131.01 -0.07 1.45 16 10 N -0.72 -8.46 5.15 -46.86 -0.24 -8.71 16 11 C 0.54 9.31 7.37 -10.99 -0.08 9.23 16 12 O -0.51 -10.85 13.71 5.56 0.08 -10.78 16 13 C -0.15 -2.97 6.16 36.01 0.22 -2.74 16 14 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 15 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 16 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 19 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.13 -1.48 6.97 -25.83 -0.18 -1.66 16 24 C -0.14 -1.13 8.00 -25.82 -0.21 -1.34 16 25 C -0.14 -0.97 7.17 -25.92 -0.19 -1.16 16 26 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.06 0.32 7.56 -51.93 -0.39 -0.07 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.46 7.56 -51.93 -0.39 0.07 16 35 H 0.40 3.26 7.23 -40.82 -0.30 2.97 16 36 H 0.08 0.92 8.06 -51.92 -0.42 0.51 16 37 H 0.08 1.45 6.91 -51.93 -0.36 1.09 16 38 H 0.40 3.46 8.66 -40.82 -0.35 3.11 16 39 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 40 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 41 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.09 0.91 8.04 -51.93 -0.42 0.49 16 43 H 0.08 1.20 7.27 -51.93 -0.38 0.82 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 47 H 0.09 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 395.78 15.07 5.96 5.96 Total: -1.00 -35.74 395.78 -8.58 -44.32 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -8.04 Total: 3.69 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 0.38 Total: -4.40 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.18 Total: -42.18 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.16 Total: -19.90 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.74 -8.58 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064474352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.929 kcal (2) G-P(sol) polarization free energy of solvation -35.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds