Wall clock time and date at job start Tue Mar 31 2020 16:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47169 * 2 1 4 4 C 1.53003 * 109.47379 * 240.00138 * 2 1 3 5 5 C 1.50697 * 109.46858 * 120.00161 * 2 1 3 6 6 O 1.21283 * 120.00410 * 0.02562 * 5 2 1 7 7 N 1.34778 * 119.99733 * 180.02562 * 5 2 1 8 8 C 1.46501 * 119.99983 * 180.02562 * 7 5 2 9 9 C 1.53001 * 109.47567 * 182.72777 * 8 7 5 10 10 N 1.46502 * 112.84245 * 293.95349 * 9 8 7 11 11 C 1.34770 * 120.00232 * 294.93632 * 10 9 8 12 12 O 1.21281 * 120.00044 * 354.98485 * 11 10 9 13 13 C 1.50701 * 120.00273 * 174.97938 * 11 10 9 14 14 S 1.80999 * 109.47433 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00295 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99584 * 359.97438 * 15 14 13 17 17 C 1.38798 * 120.00096 * 179.97438 * 15 14 13 18 18 N 1.31628 * 119.99830 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46949 * 60.00464 * 19 17 15 21 21 H 1.48503 * 109.47013 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47589 * 300.00115 * 19 17 15 23 23 C 1.53776 * 113.61755 * 162.75832 * 9 8 7 24 24 C 1.53963 * 87.01931 * 220.04561 * 23 9 8 25 25 C 1.53781 * 113.61594 * 65.14226 * 9 8 7 26 26 H 1.08995 * 109.47188 * 299.99799 * 1 2 3 27 27 H 1.09005 * 109.46753 * 60.00113 * 1 2 3 28 28 H 1.08998 * 109.47187 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47344 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47619 * 300.00013 * 3 2 1 31 31 H 1.09004 * 109.47003 * 59.99856 * 3 2 1 32 32 H 1.09006 * 109.47013 * 300.00429 * 4 2 1 33 33 H 1.09002 * 109.46844 * 59.99620 * 4 2 1 34 34 H 1.08994 * 109.47223 * 180.02562 * 4 2 1 35 35 H 0.96994 * 120.00189 * 359.97438 * 7 5 2 36 36 H 1.09009 * 109.47087 * 302.72674 * 8 7 5 37 37 H 1.09002 * 109.47559 * 62.72360 * 8 7 5 38 38 H 0.97002 * 120.00196 * 114.94831 * 10 9 8 39 39 H 1.08999 * 109.47012 * 300.00251 * 13 11 10 40 40 H 1.08995 * 109.47155 * 60.00400 * 13 11 10 41 41 H 0.97007 * 119.99652 * 179.97438 * 18 17 15 42 42 H 1.08995 * 113.61248 * 334.56075 * 23 9 8 43 43 H 1.08996 * 113.61982 * 105.47165 * 23 9 8 44 44 H 1.08993 * 113.53503 * 270.81024 * 24 23 9 45 45 H 1.08994 * 113.66760 * 139.92695 * 24 23 9 46 46 H 1.08998 * 113.61916 * 254.53470 * 25 9 8 47 47 H 1.09004 * 113.60880 * 25.43958 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 8 1.2442 -1.1718 2.0285 7 7 3.3574 -0.8331 1.4440 8 6 3.8457 -1.5243 2.6398 9 6 5.3741 -1.4645 2.6752 10 7 5.9981 -2.2176 1.5844 11 6 5.8598 -3.5568 1.5247 12 8 5.2970 -4.1488 2.4212 13 6 6.4043 -4.3188 0.3441 14 16 6.0634 -6.0838 0.5557 15 6 6.7869 -6.7146 -0.9218 16 1 7.2550 -6.0407 -1.6242 17 6 6.7555 -8.0774 -1.1830 18 7 6.1855 -8.8986 -0.3267 19 14 7.5220 -8.7460 -2.7498 20 1 8.9679 -8.4089 -2.7763 21 1 7.3573 -10.2213 -2.7910 22 1 6.8507 -8.1394 -3.9273 23 6 5.9710 -1.7746 4.0580 24 6 6.9805 -0.6442 3.7867 25 6 5.9314 -0.0405 2.8381 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 3.9877 -0.4645 0.8055 36 1 3.4425 -1.0401 3.5294 37 1 3.5233 -2.5652 2.6151 38 1 6.5110 -1.7523 0.9051 39 1 5.9265 -3.9638 -0.5691 40 1 7.4807 -4.1620 0.2756 41 1 6.1632 -9.8510 -0.5094 42 1 5.2916 -1.5641 4.8839 43 1 6.4275 -2.7620 4.1252 44 1 7.8849 -0.9808 3.2800 45 1 7.1884 -0.0246 4.6590 46 1 6.3559 0.3698 1.9219 47 1 5.2410 0.6448 3.3300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001064474352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:55 Heat of formation + Delta-G solvation = -97.507469 kcal Electronic energy + Delta-G solvation = -26534.727647 eV Core-core repulsion = 22842.683064 eV Total energy + Delta-G solvation = -3692.044583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.84266 -40.86728 -39.08464 -36.62003 -35.51063 -34.59822 -34.30980 -30.81410 -29.15584 -28.21521 -27.92608 -27.65453 -26.76296 -24.52927 -23.16467 -21.96706 -20.64931 -20.08252 -19.81741 -17.93857 -17.83039 -17.33621 -16.88595 -16.86662 -16.50106 -16.36510 -16.02936 -15.65762 -15.26628 -14.90229 -14.84551 -14.74582 -14.60361 -14.20209 -13.81710 -13.49018 -13.31995 -13.27890 -13.17574 -13.05021 -12.94616 -12.87558 -12.75669 -12.63581 -12.62145 -11.91666 -11.90419 -11.87909 -11.81357 -11.73599 -11.38118 -11.13457 -10.82101 -10.74284 -10.27296 -10.14547 -10.03345 -8.67300 -8.35143 -6.13363 1.25567 1.43123 1.45880 1.54996 1.61760 1.62673 2.09847 2.23313 2.27975 2.99102 3.30181 3.39831 3.54653 3.67777 3.71085 3.84634 3.88892 3.92767 3.99462 4.25859 4.30043 4.40815 4.44223 4.50701 4.68590 4.72141 4.73357 4.80811 4.81896 4.86118 4.94301 4.95015 5.01230 5.04913 5.11037 5.13272 5.20930 5.27825 5.31848 5.36004 5.40429 5.41024 5.65735 6.18558 6.50477 6.53958 7.05999 7.23850 7.28282 8.73779 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011366 B = 0.003321 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.980482 B = 8428.423778 C = 9973.106484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.082 4.082 3 C -0.133 4.133 4 C -0.141 4.141 5 C 0.511 3.489 6 O -0.592 6.592 7 N -0.705 5.705 8 C 0.126 3.874 9 C 0.137 3.863 10 N -0.692 5.692 11 C 0.537 3.463 12 O -0.555 6.555 13 C -0.128 4.128 14 S -0.155 6.155 15 C -0.546 4.546 16 H 0.084 0.916 17 C 0.013 3.987 18 N -0.913 5.913 19 Si 0.998 3.002 20 H -0.260 1.260 21 H -0.281 1.281 22 H -0.261 1.261 23 C -0.148 4.148 24 C -0.127 4.127 25 C -0.111 4.111 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.036 0.964 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.413 0.587 36 H 0.077 0.923 37 H 0.030 0.970 38 H 0.420 0.580 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.271 0.729 42 H 0.093 0.907 43 H 0.046 0.954 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.105 0.895 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.489 28.495 -1.261 28.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.085 4.085 3 C -0.191 4.191 4 C -0.198 4.198 5 C 0.299 3.701 6 O -0.473 6.473 7 N -0.357 5.357 8 C 0.001 3.999 9 C 0.050 3.950 10 N -0.347 5.347 11 C 0.323 3.677 12 O -0.431 6.431 13 C -0.279 4.279 14 S 0.073 5.927 15 C -0.694 4.694 16 H 0.102 0.898 17 C -0.192 4.192 18 N -0.549 5.549 19 Si 0.819 3.181 20 H -0.185 1.185 21 H -0.206 1.206 22 H -0.186 1.186 23 C -0.187 4.187 24 C -0.164 4.164 25 C -0.148 4.148 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.250 0.750 36 H 0.095 0.905 37 H 0.048 0.952 38 H 0.258 0.742 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.079 0.921 42 H 0.111 0.889 43 H 0.064 0.936 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.123 0.877 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.015 27.028 0.834 27.116 hybrid contribution 1.105 -0.584 -1.862 2.242 sum -0.911 26.444 -1.028 26.480 Atomic orbital electron populations 1.21678 0.92595 1.01590 1.02713 1.20869 0.97681 0.97921 0.92036 1.21861 1.02220 0.91322 1.03665 1.21902 1.02025 0.99563 0.96306 1.21382 0.82154 0.78815 0.87760 1.90683 1.56696 1.50662 1.49211 1.45716 1.06879 1.57830 1.25244 1.21450 0.93709 0.96214 0.88555 1.21640 0.89380 0.95338 0.88663 1.45373 1.55068 1.05072 1.29150 1.20036 0.78392 0.82870 0.86445 1.90714 1.43175 1.69360 1.39895 1.23363 1.05326 0.99234 1.00006 1.85666 1.77286 0.98277 1.31522 1.23175 1.43215 0.95885 1.07116 0.89787 1.26139 0.95483 0.96127 1.01435 1.70189 1.42902 1.04235 1.37596 0.85011 0.78989 0.76936 0.77122 1.18480 1.20574 1.18566 1.23294 0.99623 0.99774 0.95976 1.22828 0.96761 0.96293 1.00546 1.23186 0.98035 0.91899 1.01709 0.92989 0.89287 0.94455 0.90378 0.89282 0.92526 0.94492 0.88877 0.90856 0.74974 0.90489 0.95173 0.74184 0.87394 0.87133 0.92058 0.88863 0.93555 0.89867 0.89336 0.87685 0.87101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 7.76 71.98 0.56 -1.85 16 2 C -0.08 -1.40 0.87 -52.93 -0.05 -1.44 16 3 C -0.13 -1.27 8.37 71.98 0.60 -0.67 16 4 C -0.14 -2.13 8.37 71.98 0.60 -1.53 16 5 C 0.51 13.01 6.48 87.66 0.57 13.58 16 6 O -0.59 -21.44 15.98 -3.04 -0.05 -21.49 16 7 N -0.71 -14.45 5.21 -463.04 -2.41 -16.87 16 8 C 0.13 3.24 4.99 86.38 0.43 3.67 16 9 C 0.14 2.71 0.50 4.13 0.00 2.71 16 10 N -0.69 -15.02 5.15 -420.55 -2.16 -17.18 16 11 C 0.54 18.80 7.37 87.66 0.65 19.44 16 12 O -0.55 -25.19 13.71 -3.03 -0.04 -25.24 16 13 C -0.13 -4.88 6.16 71.24 0.44 -4.44 16 14 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 15 C -0.55 -31.03 9.50 67.95 0.65 -30.38 16 16 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 17 C 0.01 0.73 5.49 84.86 0.47 1.20 16 18 N -0.91 -56.58 13.22 21.65 0.29 -56.29 16 19 Si 1.00 43.41 29.55 68.60 2.03 45.44 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 23 C -0.15 -3.22 6.97 31.18 0.22 -3.00 16 24 C -0.13 -1.67 8.00 31.18 0.25 -1.42 16 25 C -0.11 -1.10 7.17 31.12 0.22 -0.88 16 26 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 27 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.04 0.88 8.10 -2.39 -0.02 0.86 16 29 H 0.08 0.46 7.56 -2.39 -0.02 0.44 16 30 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 0.90 7.56 -2.39 -0.02 0.88 16 35 H 0.41 5.48 7.23 -92.71 -0.67 4.81 16 36 H 0.08 1.94 8.06 -2.38 -0.02 1.92 16 37 H 0.03 1.12 6.91 -2.39 -0.02 1.10 16 38 H 0.42 5.65 8.66 -92.71 -0.80 4.85 16 39 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 40 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 41 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 42 H 0.09 1.91 8.04 -2.39 -0.02 1.90 16 43 H 0.05 1.38 7.27 -2.39 -0.02 1.36 16 44 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 45 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.10 0.48 8.09 -2.39 -0.02 0.46 16 47 H 0.11 0.89 8.10 -2.39 -0.02 0.87 16 Total: -1.00 -86.21 395.78 1.58 -84.63 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -0.51 Total: 21.76 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 5.60 Total: -5.03 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -4.29 Total: -90.35 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -0.09 Total: -46.72 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -86.21 1.58 -84.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064474352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.874 kcal (2) G-P(sol) polarization free energy of solvation -86.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds